EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000012660 (Gene tree)
Gene ID: -
Gene Symbol: rbm42
Alias: mgc10433l|zgc:109907
Full Name: RNA binding motif protein 42
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 5022 bases
Position: chrGeneScaffold_4660:17543-22564
Accession: ZDB-GENE-040809-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000013548	RRM_1	PF00076.22	5.6e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000013905	-	1203	-	ENSGMOP00000013548	400 (aa)	-	UPI00023F2801

Gene Model

Click here to download ENSGMOG00000012660's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000012660's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000012660	rbm42	100	73.236	ENSAPOG00000015109	rbm42	100	72.263	Acanthochromis_polyacanthus
ENSGMOG00000012660	rbm42	100	66.667	ENSACIG00000010771	rbm42	100	68.689	Amphilophus_citrinellus
ENSGMOG00000012660	rbm42	100	72.506	ENSAOCG00000008873	rbm42	100	74.029	Amphiprion_ocellaris
ENSGMOG00000012660	rbm42	100	72.506	ENSAPEG00000012051	rbm42	99	74.029	Amphiprion_percula
ENSGMOG00000012660	rbm42	100	71.707	ENSATEG00000000536	rbm42	100	73.659	Anabas_testudineus
ENSGMOG00000012660	rbm42	100	71.776	ENSACLG00000004988	rbm42	100	72.263	Astatotilapia_calliptera
ENSGMOG00000012660	rbm42	100	70.023	ENSAMXG00000016545	rbm42	100	70.192	Astyanax_mexicanus
ENSGMOG00000012660	rbm42	97	68.734	ENSCSEG00000010248	rbm42	100	68.329	Cynoglossus_semilaevis
ENSGMOG00000012660	rbm42	100	65.493	ENSCVAG00000015589	rbm42	100	68.370	Cyprinodon_variegatus
ENSGMOG00000012660	rbm42	100	67.554	ENSDARG00000039910	rbm42	100	67.397	Danio_rerio
ENSGMOG00000012660	rbm42	100	71.127	ENSELUG00000022403	rbm42	100	70.047	Esox_lucius
ENSGMOG00000012660	rbm42	56	81.416	ENSFHEG00000006764	rbm42	75	81.416	Fundulus_heteroclitus
ENSGMOG00000012660	rbm42	77	67.302	ENSGAFG00000009059	rbm42	98	71.753	Gambusia_affinis
ENSGMOG00000012660	rbm42	100	68.370	ENSGACG00000004170	rbm42	100	70.388	Gasterosteus_aculeatus
ENSGMOG00000012660	rbm42	100	71.533	ENSHBUG00000011141	rbm42	100	72.263	Haplochromis_burtoni
ENSGMOG00000012660	rbm42	100	67.561	ENSHCOG00000021214	rbm42	100	67.640	Hippocampus_comes
ENSGMOG00000012660	rbm42	100	71.667	ENSIPUG00000022365	rbm42	99	69.690	Ictalurus_punctatus
ENSGMOG00000012660	rbm42	91	66.935	ENSKMAG00000015287	rbm42	99	66.129	Kryptolebias_marmoratus
ENSGMOG00000012660	rbm42	86	73.889	ENSLBEG00000004578	-	96	70.255	Labrus_bergylta
ENSGMOG00000012660	rbm42	100	73.286	ENSLBEG00000017547	rbm42	100	70.702	Labrus_bergylta
ENSGMOG00000012660	rbm42	100	63.357	ENSLOCG00000003368	rbm42	100	63.744	Lepisosteus_oculatus
ENSGMOG00000012660	rbm42	100	71.883	ENSMAMG00000006708	rbm42	100	75.182	Mastacembelus_armatus
ENSGMOG00000012660	rbm42	100	71.776	ENSMZEG00005025234	rbm42	100	72.263	Maylandia_zebra
ENSGMOG00000012660	rbm42	100	62.069	ENSMALG00000015720	rbm42	100	72.800	Monopterus_albus
ENSGMOG00000012660	rbm42	100	71.498	ENSONIG00000008029	rbm42	100	72.048	Oreochromis_niloticus
ENSGMOG00000012660	rbm42	100	67.726	ENSORLG00015000659	rbm42	100	65.468	Oryzias_latipes_hsok
ENSGMOG00000012660	rbm42	58	82.553	ENSOMEG00000014332	rbm42	84	83.482	Oryzias_melastigma
ENSGMOG00000012660	rbm42	100	69.544	ENSPKIG00000015165	rbm42	100	67.150	Paramormyrops_kingsleyae
ENSGMOG00000012660	rbm42	72	80.645	ENSPMGG00000003569	rbm42	100	95.714	Periophthalmus_magnuspinnatus
ENSGMOG00000012660	rbm42	52	53.333	ENSPMAG00000008633	rbm42	60	53.191	Petromyzon_marinus
ENSGMOG00000012660	rbm42	100	69.193	ENSPFOG00000007701	rbm42	100	71.324	Poecilia_formosa
ENSGMOG00000012660	rbm42	100	69.193	ENSPLAG00000009405	rbm42	100	66.190	Poecilia_latipinna
ENSGMOG00000012660	rbm42	100	69.193	ENSPMEG00000010375	rbm42	100	68.382	Poecilia_mexicana
ENSGMOG00000012660	rbm42	100	69.438	ENSPREG00000018102	rbm42	100	68.627	Poecilia_reticulata
ENSGMOG00000012660	rbm42	100	71.776	ENSPNYG00000014460	rbm42	100	72.263	Pundamilia_nyererei
ENSGMOG00000012660	rbm42	100	70.686	ENSPNAG00000009961	rbm42	100	68.571	Pygocentrus_nattereri
ENSGMOG00000012660	rbm42	100	67.217	ENSSFOG00015019227	rbm42	100	66.588	Scleropages_formosus
ENSGMOG00000012660	rbm42	100	74.334	ENSSMAG00000011935	rbm42	100	73.366	Scophthalmus_maximus
ENSGMOG00000012660	rbm42	100	73.966	ENSSDUG00000004033	rbm42	100	75.728	Seriola_dumerili
ENSGMOG00000012660	rbm42	100	65.281	ENSSLDG00000009918	rbm42	100	97.183	Seriola_lalandi_dorsalis
ENSGMOG00000012660	rbm42	100	72.573	ENSSPAG00000019871	rbm42	100	72.816	Stegastes_partitus
ENSGMOG00000012660	rbm42	100	66.339	ENSTRUG00000024586	-	76	65.111	Takifugu_rubripes
ENSGMOG00000012660	rbm42	99	57.534	ENSTNIG00000011669	rbm42	99	60.455	Tetraodon_nigroviridis
ENSGMOG00000012660	rbm42	100	53.440	ENSXETG00000017599	rbm42	52	69.507	Xenopus_tropicalis
ENSGMOG00000012660	rbm42	100	68.689	ENSXMAG00000012827	rbm42	100	68.613	Xiphophorus_maculatus