EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000013320 (Gene tree)
Gene ID: -
Gene Symbol: lsm7
Alias: fj64g01|wu:fj64g01|zgc:66405
Full Name: LSM7 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 522 bases
Position: chrGeneScaffold_1112:62858-63379
Accession: ZDB-GENE-030131-8284
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000014243	LSM	PF01423.22	6.7e-21	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000014608	-	312	-	ENSGMOP00000014243	103 (aa)	-	UPI00023F2B2B

Gene Model

Click here to download ENSGMOG00000013320's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000013320's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000013320	lsm7	100	91.262	ENSG00000130332	LSM7	100	91.837	Homo_sapiens
ENSGMOG00000013320	lsm7	96	93.939	ENSAPOG00000015573	lsm7	85	93.939	Acanthochromis_polyacanthus
ENSGMOG00000013320	lsm7	100	92.233	ENSAMEG00000005484	LSM7	100	92.233	Ailuropoda_melanoleuca
ENSGMOG00000013320	lsm7	94	96.907	ENSACIG00000006498	lsm7	77	96.907	Amphilophus_citrinellus
ENSGMOG00000013320	lsm7	99	97.059	ENSAOCG00000001077	lsm7	93	97.059	Amphiprion_ocellaris
ENSGMOG00000013320	lsm7	100	98.058	ENSAPEG00000024447	lsm7	93	97.059	Amphiprion_percula
ENSGMOG00000013320	lsm7	100	96.117	ENSAPEG00000000694	lsm7	100	96.117	Amphiprion_percula
ENSGMOG00000013320	lsm7	100	96.117	ENSATEG00000008557	lsm7	100	96.117	Anabas_testudineus
ENSGMOG00000013320	lsm7	100	82.524	ENSANAG00000022222	-	100	82.524	Aotus_nancymaae
ENSGMOG00000013320	lsm7	100	91.262	ENSANAG00000037196	-	100	91.262	Aotus_nancymaae
ENSGMOG00000013320	lsm7	100	95.146	ENSACLG00000021021	lsm7	100	95.146	Astatotilapia_calliptera
ENSGMOG00000013320	lsm7	100	94.175	ENSAMXG00000037622	lsm7	100	94.175	Astyanax_mexicanus
ENSGMOG00000013320	lsm7	100	91.262	ENSBTAG00000004521	LSM7	100	91.262	Bos_taurus
ENSGMOG00000013320	lsm7	98	57.426	WBGene00003081	lsm-7	97	57.426	Caenorhabditis_elegans
ENSGMOG00000013320	lsm7	69	74.648	ENSCJAG00000039713	-	87	74.648	Callithrix_jacchus
ENSGMOG00000013320	lsm7	99	92.157	ENSCAFG00000019409	LSM7	99	92.157	Canis_familiaris
ENSGMOG00000013320	lsm7	99	92.157	ENSCAFG00020018168	LSM7	74	92.079	Canis_lupus_dingo
ENSGMOG00000013320	lsm7	100	93.204	ENSCHIG00000023663	LSM7	100	93.204	Capra_hircus
ENSGMOG00000013320	lsm7	69	92.958	ENSCAPG00000014534	LSM7	100	92.958	Cavia_aperea
ENSGMOG00000013320	lsm7	100	91.262	ENSCPOG00000014025	LSM7	100	93.069	Cavia_porcellus
ENSGMOG00000013320	lsm7	98	93.069	ENSCCAG00000035456	LSM7	99	93.069	Cebus_capucinus
ENSGMOG00000013320	lsm7	100	91.262	ENSCATG00000023543	LSM7	100	91.262	Cercocebus_atys
ENSGMOG00000013320	lsm7	100	91.262	ENSCLAG00000011635	LSM7	100	91.262	Chinchilla_lanigera
ENSGMOG00000013320	lsm7	100	91.262	ENSCSAG00000011599	LSM7	100	91.262	Chlorocebus_sabaeus
ENSGMOG00000013320	lsm7	70	93.056	ENSCPBG00000021317	LSM7	77	93.056	Chrysemys_picta_bellii
ENSGMOG00000013320	lsm7	93	81.250	ENSCING00000022134	-	97	81.250	Ciona_intestinalis
ENSGMOG00000013320	lsm7	100	91.262	ENSCANG00000035525	LSM7	100	91.262	Colobus_angolensis_palliatus
ENSGMOG00000013320	lsm7	100	92.233	ENSCGRG00001000807	-	100	92.233	Cricetulus_griseus_chok1gshd
ENSGMOG00000013320	lsm7	83	85.882	ENSCGRG00001016005	-	89	85.882	Cricetulus_griseus_chok1gshd
ENSGMOG00000013320	lsm7	99	94.118	ENSCGRG00000014355	-	98	94.118	Cricetulus_griseus_crigri
ENSGMOG00000013320	lsm7	83	85.882	ENSCGRG00000006821	-	89	85.882	Cricetulus_griseus_crigri
ENSGMOG00000013320	lsm7	99	97.059	ENSCSEG00000014900	lsm7	86	98.020	Cynoglossus_semilaevis
ENSGMOG00000013320	lsm7	99	96.078	ENSCVAG00000021091	lsm7	94	96.078	Cyprinodon_variegatus
ENSGMOG00000013320	lsm7	100	93.204	ENSDARG00000058328	lsm7	100	93.204	Danio_rerio
ENSGMOG00000013320	lsm7	98	91.089	ENSDORG00000024460	Lsm7	99	91.089	Dipodomys_ordii
ENSGMOG00000013320	lsm7	94	73.469	FBgn0261068	LSm7	89	73.469	Drosophila_melanogaster
ENSGMOG00000013320	lsm7	99	90.196	ENSETEG00000012788	LSM7	100	90.196	Echinops_telfairi
ENSGMOG00000013320	lsm7	81	57.831	ENSEBUG00000010470	-	79	57.831	Eptatretus_burgeri
ENSGMOG00000013320	lsm7	100	83.495	ENSEBUG00000016992	lsm7	99	83.495	Eptatretus_burgeri
ENSGMOG00000013320	lsm7	100	89.320	ENSECAG00000001440	LSM7	66	89.320	Equus_caballus
ENSGMOG00000013320	lsm7	100	90.291	ENSFCAG00000003445	LSM7	100	90.291	Felis_catus
ENSGMOG00000013320	lsm7	98	95.050	ENSFALG00000011912	LSM7	100	95.050	Ficedula_albicollis
ENSGMOG00000013320	lsm7	93	92.708	ENSFDAG00000007661	LSM7	100	92.708	Fukomys_damarensis
ENSGMOG00000013320	lsm7	98	97.030	ENSFHEG00000006349	lsm7	90	97.030	Fundulus_heteroclitus
ENSGMOG00000013320	lsm7	100	95.146	ENSGAFG00000013902	lsm7	100	95.146	Gambusia_affinis
ENSGMOG00000013320	lsm7	100	98.058	ENSGACG00000010390	lsm7	100	98.058	Gasterosteus_aculeatus
ENSGMOG00000013320	lsm7	100	91.262	ENSGGOG00000010172	LSM7	100	91.262	Gorilla_gorilla
ENSGMOG00000013320	lsm7	99	97.059	ENSHBUG00000004616	lsm7	100	95.146	Haplochromis_burtoni
ENSGMOG00000013320	lsm7	100	91.262	ENSHGLG00000010587	LSM7	100	91.262	Heterocephalus_glaber_female
ENSGMOG00000013320	lsm7	100	91.262	ENSHGLG00100000852	LSM7	100	91.262	Heterocephalus_glaber_male
ENSGMOG00000013320	lsm7	98	97.030	ENSHCOG00000020252	lsm7	100	97.030	Hippocampus_comes
ENSGMOG00000013320	lsm7	100	94.175	ENSIPUG00000024724	lsm7	100	94.175	Ictalurus_punctatus
ENSGMOG00000013320	lsm7	99	93.137	ENSSTOG00000028372	LSM7	99	93.069	Ictidomys_tridecemlineatus
ENSGMOG00000013320	lsm7	97	95.000	ENSJJAG00000001936	Lsm7	97	95.000	Jaculus_jaculus
ENSGMOG00000013320	lsm7	100	95.146	ENSKMAG00000022151	lsm7	100	95.146	Kryptolebias_marmoratus
ENSGMOG00000013320	lsm7	100	96.117	ENSLBEG00000005203	lsm7	100	96.117	Labrus_bergylta
ENSGMOG00000013320	lsm7	90	93.548	ENSLACG00000015700	LSM7	100	93.204	Latimeria_chalumnae
ENSGMOG00000013320	lsm7	100	94.175	ENSLOCG00000004356	lsm7	100	94.175	Lepisosteus_oculatus
ENSGMOG00000013320	lsm7	99	93.137	ENSLAFG00000029302	LSM7	99	93.137	Loxodonta_africana
ENSGMOG00000013320	lsm7	100	91.262	ENSMFAG00000044572	LSM7	100	91.262	Macaca_fascicularis
ENSGMOG00000013320	lsm7	100	91.262	ENSMMUG00000000452	LSM7	99	93.069	Macaca_mulatta
ENSGMOG00000013320	lsm7	100	91.262	ENSMNEG00000004393	LSM7	100	91.262	Macaca_nemestrina
ENSGMOG00000013320	lsm7	100	91.262	ENSMLEG00000030852	LSM7	100	93.069	Mandrillus_leucophaeus
ENSGMOG00000013320	lsm7	100	95.146	ENSMAMG00000005410	lsm7	100	95.146	Mastacembelus_armatus
ENSGMOG00000013320	lsm7	100	95.146	ENSMZEG00005028055	lsm7	100	95.146	Maylandia_zebra
ENSGMOG00000013320	lsm7	100	93.204	ENSMGAG00000000750	LSM7	89	93.204	Meleagris_gallopavo
ENSGMOG00000013320	lsm7	100	93.204	ENSMAUG00000009276	Lsm7	100	93.204	Mesocricetus_auratus
ENSGMOG00000013320	lsm7	100	92.233	ENSMICG00000009988	-	100	92.233	Microcebus_murinus
ENSGMOG00000013320	lsm7	100	91.262	ENSMICG00000028619	-	100	91.262	Microcebus_murinus
ENSGMOG00000013320	lsm7	100	92.233	ENSMOCG00000016925	Lsm7	100	92.233	Microtus_ochrogaster
ENSGMOG00000013320	lsm7	100	96.117	ENSMMOG00000019645	lsm7	98	96.117	Mola_mola
ENSGMOG00000013320	lsm7	100	92.233	ENSMODG00000004722	LSM7	100	92.233	Monodelphis_domestica
ENSGMOG00000013320	lsm7	100	95.146	ENSMALG00000014511	lsm7	79	95.146	Monopterus_albus
ENSGMOG00000013320	lsm7	99	92.157	MGP_CAROLIEiJ_G0015607	Lsm7	99	92.157	Mus_caroli
ENSGMOG00000013320	lsm7	99	92.157	ENSMUSG00000035215	Lsm7	99	92.157	Mus_musculus
ENSGMOG00000013320	lsm7	99	92.157	MGP_PahariEiJ_G0031020	Lsm7	99	92.157	Mus_pahari
ENSGMOG00000013320	lsm7	99	92.157	MGP_SPRETEiJ_G0016425	Lsm7	99	92.157	Mus_spretus
ENSGMOG00000013320	lsm7	99	85.294	ENSMLUG00000024002	-	94	85.294	Myotis_lucifugus
ENSGMOG00000013320	lsm7	100	92.233	ENSMLUG00000013097	-	100	92.233	Myotis_lucifugus
ENSGMOG00000013320	lsm7	100	91.262	ENSNGAG00000021637	Lsm7	100	91.262	Nannospalax_galili
ENSGMOG00000013320	lsm7	100	96.117	ENSNBRG00000001237	-	82	96.117	Neolamprologus_brichardi
ENSGMOG00000013320	lsm7	99	97.059	ENSNBRG00000015770	lsm7	88	97.059	Neolamprologus_brichardi
ENSGMOG00000013320	lsm7	100	91.262	ENSNLEG00000002265	LSM7	100	91.262	Nomascus_leucogenys
ENSGMOG00000013320	lsm7	100	91.262	ENSODEG00000013590	-	100	91.262	Octodon_degus
ENSGMOG00000013320	lsm7	100	71.845	ENSODEG00000008190	-	100	71.845	Octodon_degus
ENSGMOG00000013320	lsm7	100	84.466	ENSODEG00000018769	-	100	84.466	Octodon_degus
ENSGMOG00000013320	lsm7	100	95.146	ENSONIG00000001801	lsm7	89	95.146	Oreochromis_niloticus
ENSGMOG00000013320	lsm7	100	98.058	ENSORLG00000023951	lsm7	100	96.117	Oryzias_latipes
ENSGMOG00000013320	lsm7	100	98.058	ENSORLG00020022226	lsm7	100	96.117	Oryzias_latipes_hni
ENSGMOG00000013320	lsm7	100	98.058	ENSORLG00015020044	lsm7	94	97.059	Oryzias_latipes_hsok
ENSGMOG00000013320	lsm7	100	96.117	ENSOMEG00000012806	lsm7	100	96.117	Oryzias_melastigma
ENSGMOG00000013320	lsm7	100	81.553	ENSOGAG00000024373	-	100	81.553	Otolemur_garnettii
ENSGMOG00000013320	lsm7	99	93.137	ENSOGAG00000000144	-	100	93.137	Otolemur_garnettii
ENSGMOG00000013320	lsm7	100	93.204	ENSOARG00000014013	LSM7	100	93.204	Ovis_aries
ENSGMOG00000013320	lsm7	100	91.262	ENSPPAG00000026500	LSM7	100	91.262	Pan_paniscus
ENSGMOG00000013320	lsm7	100	90.291	ENSPPRG00000008624	LSM7	100	90.291	Panthera_pardus
ENSGMOG00000013320	lsm7	98	92.079	ENSPTIG00000016252	LSM7	98	92.079	Panthera_tigris_altaica
ENSGMOG00000013320	lsm7	100	91.262	ENSPTRG00000010233	LSM7	100	91.262	Pan_troglodytes
ENSGMOG00000013320	lsm7	100	91.262	ENSPANG00000020668	LSM7	100	91.262	Papio_anubis
ENSGMOG00000013320	lsm7	100	94.175	ENSPKIG00000011325	lsm7	100	94.175	Paramormyrops_kingsleyae
ENSGMOG00000013320	lsm7	98	95.050	ENSPSIG00000017149	LSM7	89	95.050	Pelodiscus_sinensis
ENSGMOG00000013320	lsm7	100	96.117	ENSPMGG00000006498	lsm7	100	96.117	Periophthalmus_magnuspinnatus
ENSGMOG00000013320	lsm7	100	92.233	ENSPCIG00000030454	LSM7	99	94.059	Phascolarctos_cinereus
ENSGMOG00000013320	lsm7	100	96.117	ENSPFOG00000012467	lsm7	91	96.117	Poecilia_formosa
ENSGMOG00000013320	lsm7	100	96.117	ENSPLAG00000000252	lsm7	94	96.040	Poecilia_latipinna
ENSGMOG00000013320	lsm7	100	96.117	ENSPMEG00000000587	lsm7	94	96.040	Poecilia_mexicana
ENSGMOG00000013320	lsm7	78	75.309	ENSPREG00000016718	lsm7	65	75.309	Poecilia_reticulata
ENSGMOG00000013320	lsm7	98	73.267	ENSPPYG00000009348	-	67	73.267	Pongo_abelii
ENSGMOG00000013320	lsm7	100	91.262	ENSPCOG00000017177	LSM7	99	93.069	Propithecus_coquereli
ENSGMOG00000013320	lsm7	100	95.146	ENSPNYG00000006938	lsm7	100	95.146	Pundamilia_nyererei
ENSGMOG00000013320	lsm7	100	94.175	ENSPNAG00000010141	lsm7	99	96.040	Pygocentrus_nattereri
ENSGMOG00000013320	lsm7	99	93.137	ENSRNOG00000019552	Lsm7	99	93.137	Rattus_norvegicus
ENSGMOG00000013320	lsm7	100	91.262	ENSRBIG00000035978	LSM7	100	91.262	Rhinopithecus_bieti
ENSGMOG00000013320	lsm7	100	91.262	ENSRROG00000034044	LSM7	100	91.262	Rhinopithecus_roxellana
ENSGMOG00000013320	lsm7	80	50.588	YNL147W	-	74	50.588	Saccharomyces_cerevisiae
ENSGMOG00000013320	lsm7	100	91.262	ENSSBOG00000034899	LSM7	100	91.262	Saimiri_boliviensis_boliviensis
ENSGMOG00000013320	lsm7	100	94.175	ENSSFOG00015006728	lsm7	100	94.175	Scleropages_formosus
ENSGMOG00000013320	lsm7	100	97.087	ENSSMAG00000004195	lsm7	94	97.087	Scophthalmus_maximus
ENSGMOG00000013320	lsm7	100	96.117	ENSSDUG00000001863	lsm7	100	96.117	Seriola_dumerili
ENSGMOG00000013320	lsm7	100	96.117	ENSSLDG00000016339	lsm7	100	96.117	Seriola_lalandi_dorsalis
ENSGMOG00000013320	lsm7	100	96.117	ENSSPAG00000015221	lsm7	100	96.117	Stegastes_partitus
ENSGMOG00000013320	lsm7	98	93.069	ENSSSCG00000013463	LSM7	99	93.069	Sus_scrofa
ENSGMOG00000013320	lsm7	98	95.050	ENSTGUG00000000067	LSM7	100	95.050	Taeniopygia_guttata
ENSGMOG00000013320	lsm7	100	94.175	ENSTRUG00000022913	lsm7	100	94.175	Takifugu_rubripes
ENSGMOG00000013320	lsm7	100	94.175	ENSTNIG00000015525	lsm7	100	94.175	Tetraodon_nigroviridis
ENSGMOG00000013320	lsm7	68	81.429	ENSTBEG00000016602	LSM7	100	81.429	Tupaia_belangeri
ENSGMOG00000013320	lsm7	100	92.233	ENSUAMG00000000912	LSM7	86	92.233	Ursus_americanus
ENSGMOG00000013320	lsm7	99	91.176	ENSUMAG00000006556	LSM7	79	92.079	Ursus_maritimus
ENSGMOG00000013320	lsm7	69	91.549	ENSVVUG00000002640	LSM7	65	91.549	Vulpes_vulpes
ENSGMOG00000013320	lsm7	98	95.050	ENSXETG00000022166	lsm7	100	95.050	Xenopus_tropicalis
ENSGMOG00000013320	lsm7	98	97.030	ENSXCOG00000002572	lsm7	99	97.030	Xiphophorus_couchianus
ENSGMOG00000013320	lsm7	100	97.087	ENSXMAG00000018630	lsm7	100	95.146	Xiphophorus_maculatus