EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000014458 (Gene tree)
Gene ID: -
Gene Symbol: srsf6a (1 of many)
Alias: fa12h12|sfrs6a|wu:fa12h12|wu:fa13e06|zgc:63770
Full Name: serine/arginine-rich splicing factor 6a
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 5746 bases
Position: chrGeneScaffold_3651:100386-106131
Accession: ZDB-GENE-040426-2824
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000015569	RRM_1	PF00076.22	6.6e-32	1	2
ENSGMOP00000015569	RRM_1	PF00076.22	6.6e-32	2	2
ENSGMOP00000015558	RRM_1	PF00076.22	8.1e-32	1	2
ENSGMOP00000015558	RRM_1	PF00076.22	8.1e-32	2	2
ENSGMOP00000015553	RRM_1	PF00076.22	9.6e-32	1	2
ENSGMOP00000015553	RRM_1	PF00076.22	9.6e-32	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000015954	-	1191	-	ENSGMOP00000015558	396 (aa)	-	UPI00023F2F93
ENSGMOT00000015965	-	1107	-	ENSGMOP00000015569	369 (aa)	-	UPI00023F2F94
ENSGMOT00000015949	-	1260	-	ENSGMOP00000015553	419 (aa)	-	UPI00023F2F92

Gene Model

Click here to download ENSGMOG00000014458's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000014458's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000014458	srsf6a	52	67.150	ENSGMOG00000012906	srsf4	56	69.444
ENSGMOG00000014458	srsf6a	50	52.752	ENSGMOG00000000595	srsf5b	95	53.670
ENSGMOG00000014458	srsf6a	51	68.449	ENSGMOG00000006105	srsf6a	62	70.787
ENSGMOG00000014458	srsf6a	51	37.374	ENSGMOG00000007980	srsf9	79	42.584
ENSGMOG00000014458	srsf6a	59	41.841	ENSGMOG00000014787	-	67	43.503
ENSGMOG00000014458	srsf6a	51	58.824	ENSGMOG00000000869	srsf5a	92	62.921

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000014458	srsf6a	52	78.646	ENSG00000124193	SRSF6	56	90.789	Homo_sapiens
ENSGMOG00000014458	srsf6a	52	66.321	ENSAMEG00000003710	SRSF6	53	66.310	Ailuropoda_melanoleuca
ENSGMOG00000014458	srsf6a	92	60.807	ENSACIG00000023658	-	79	85.876	Amphilophus_citrinellus
ENSGMOG00000014458	srsf6a	99	59.511	ENSACIG00000020091	-	95	83.465	Amphilophus_citrinellus
ENSGMOG00000014458	srsf6a	76	71.326	ENSAOCG00000004309	-	56	82.796	Amphiprion_ocellaris
ENSGMOG00000014458	srsf6a	53	80.203	ENSAPEG00000020746	-	64	84.615	Amphiprion_percula
ENSGMOG00000014458	srsf6a	52	79.581	ENSATEG00000007255	-	70	81.868	Anabas_testudineus
ENSGMOG00000014458	srsf6a	51	80.526	ENSACAG00000002061	SRSF6	51	83.333	Anolis_carolinensis
ENSGMOG00000014458	srsf6a	52	78.646	ENSANAG00000024080	SRSF6	56	90.789	Aotus_nancymaae
ENSGMOG00000014458	srsf6a	51	82.105	ENSAMXG00000042692	-	96	82.222	Astyanax_mexicanus
ENSGMOG00000014458	srsf6a	52	77.604	ENSBTAG00000008527	SRSF6	56	89.474	Bos_taurus
ENSGMOG00000014458	srsf6a	52	78.646	ENSCJAG00000048403	SRSF6	85	79.913	Callithrix_jacchus
ENSGMOG00000014458	srsf6a	52	77.604	ENSCAFG00000009289	SRSF6	56	89.474	Canis_familiaris
ENSGMOG00000014458	srsf6a	52	77.604	ENSCAFG00020013559	SRSF6	56	89.474	Canis_lupus_dingo
ENSGMOG00000014458	srsf6a	52	77.604	ENSCHIG00000015890	-	56	89.474	Capra_hircus
ENSGMOG00000014458	srsf6a	52	77.083	ENSCHIG00000009148	-	52	81.768	Capra_hircus
ENSGMOG00000014458	srsf6a	67	64.228	ENSCPOG00000011761	SRSF6	56	90.789	Cavia_porcellus
ENSGMOG00000014458	srsf6a	52	78.646	ENSCCAG00000026018	-	56	90.789	Cebus_capucinus
ENSGMOG00000014458	srsf6a	52	71.282	ENSCCAG00000018540	-	60	71.978	Cebus_capucinus
ENSGMOG00000014458	srsf6a	52	78.646	ENSCATG00000030794	SRSF6	56	90.789	Cercocebus_atys
ENSGMOG00000014458	srsf6a	52	78.646	ENSCLAG00000010247	SRSF6	56	90.789	Chinchilla_lanigera
ENSGMOG00000014458	srsf6a	52	78.646	ENSCSAG00000014022	SRSF6	53	83.425	Chlorocebus_sabaeus
ENSGMOG00000014458	srsf6a	52	80.208	ENSCPBG00000018200	SRSF6	53	83.333	Chrysemys_picta_bellii
ENSGMOG00000014458	srsf6a	52	77.604	ENSCANG00000037774	-	53	82.320	Colobus_angolensis_palliatus
ENSGMOG00000014458	srsf6a	52	77.604	ENSCGRG00001022339	Srsf6	56	88.158	Cricetulus_griseus_chok1gshd
ENSGMOG00000014458	srsf6a	51	83.158	ENSDARG00000016783	srsf6b	80	90.789	Danio_rerio
ENSGMOG00000014458	srsf6a	52	78.646	ENSDNOG00000008410	SRSF6	52	83.425	Dasypus_novemcinctus
ENSGMOG00000014458	srsf6a	52	78.646	ENSDORG00000028378	Srsf6	56	90.789	Dipodomys_ordii
ENSGMOG00000014458	srsf6a	52	75.000	ENSETEG00000006221	SRSF6	52	79.444	Echinops_telfairi
ENSGMOG00000014458	srsf6a	52	77.604	ENSEASG00005023429	SRSF6	53	82.320	Equus_asinus_asinus
ENSGMOG00000014458	srsf6a	52	77.604	ENSECAG00000023932	SRSF6	56	82.320	Equus_caballus
ENSGMOG00000014458	srsf6a	51	83.684	ENSELUG00000024182	SRSF6	92	82.540	Esox_lucius
ENSGMOG00000014458	srsf6a	51	83.069	ENSELUG00000013506	SRSF6	90	86.813	Esox_lucius
ENSGMOG00000014458	srsf6a	52	77.604	ENSFCAG00000032814	SRSF6	53	82.320	Felis_catus
ENSGMOG00000014458	srsf6a	85	60.059	ENSFHEG00000023065	srsf6a	54	86.111	Fundulus_heteroclitus
ENSGMOG00000014458	srsf6a	51	79.688	ENSGALG00000000990	SRSF6	56	90.789	Gallus_gallus
ENSGMOG00000014458	srsf6a	93	67.045	ENSGACG00000006084	srsf6a	52	85.792	Gasterosteus_aculeatus
ENSGMOG00000014458	srsf6a	52	80.208	ENSGAGG00000003238	SRSF6	53	83.333	Gopherus_agassizii
ENSGMOG00000014458	srsf6a	52	78.646	ENSGGOG00000009808	SRSF6	56	90.789	Gorilla_gorilla
ENSGMOG00000014458	srsf6a	63	76.230	ENSHBUG00000006386	-	77	83.871	Haplochromis_burtoni
ENSGMOG00000014458	srsf6a	52	78.646	ENSHGLG00000007348	SRSF6	56	90.789	Heterocephalus_glaber_female
ENSGMOG00000014458	srsf6a	54	64.532	ENSHGLG00000007701	-	56	66.480	Heterocephalus_glaber_female
ENSGMOG00000014458	srsf6a	92	57.895	ENSHCOG00000002740	srsf6a	74	81.421	Hippocampus_comes
ENSGMOG00000014458	srsf6a	54	70.283	ENSIPUG00000016856	SRSF6	50	81.034	Ictalurus_punctatus
ENSGMOG00000014458	srsf6a	51	79.581	ENSIPUG00000004776	-	87	86.111	Ictalurus_punctatus
ENSGMOG00000014458	srsf6a	52	78.646	ENSSTOG00000010866	SRSF6	56	90.789	Ictidomys_tridecemlineatus
ENSGMOG00000014458	srsf6a	51	77.368	ENSKMAG00000011934	srsf6a	77	81.667	Kryptolebias_marmoratus
ENSGMOG00000014458	srsf6a	92	68.421	ENSLBEG00000007356	srsf6a	50	85.635	Labrus_bergylta
ENSGMOG00000014458	srsf6a	90	63.501	ENSLACG00000005466	SRSF6	54	82.320	Latimeria_chalumnae
ENSGMOG00000014458	srsf6a	52	78.646	ENSMFAG00000036925	SRSF6	56	90.789	Macaca_fascicularis
ENSGMOG00000014458	srsf6a	52	78.646	ENSMMUG00000006742	SRSF6	56	90.789	Macaca_mulatta
ENSGMOG00000014458	srsf6a	52	78.125	ENSMNEG00000038270	-	53	82.873	Macaca_nemestrina
ENSGMOG00000014458	srsf6a	52	78.125	ENSMNEG00000027392	-	56	89.474	Macaca_nemestrina
ENSGMOG00000014458	srsf6a	93	69.540	ENSMAMG00000017161	srsf6a	52	85.792	Mastacembelus_armatus
ENSGMOG00000014458	srsf6a	51	76.720	ENSMZEG00005020658	-	82	80.000	Maylandia_zebra
ENSGMOG00000014458	srsf6a	66	79.835	ENSMZEG00005008032	-	56	88.333	Maylandia_zebra
ENSGMOG00000014458	srsf6a	52	78.125	ENSMICG00000008537	SRSF6	56	90.789	Microcebus_murinus
ENSGMOG00000014458	srsf6a	55	80.734	ENSMODG00000003107	SRSF6	54	82.796	Monodelphis_domestica
ENSGMOG00000014458	srsf6a	52	77.604	MGP_CAROLIEiJ_G0024606	Srsf6	56	88.158	Mus_caroli
ENSGMOG00000014458	srsf6a	52	77.604	ENSMUSG00000016921	Srsf6	56	88.158	Mus_musculus
ENSGMOG00000014458	srsf6a	52	77.604	MGP_PahariEiJ_G0026050	Srsf6	56	88.158	Mus_pahari
ENSGMOG00000014458	srsf6a	52	77.604	MGP_SPRETEiJ_G0025528	Srsf6	56	88.158	Mus_spretus
ENSGMOG00000014458	srsf6a	52	77.604	ENSMPUG00000017692	SRSF6	63	82.320	Mustela_putorius_furo
ENSGMOG00000014458	srsf6a	61	50.936	ENSMLUG00000016618	SRSF6	53	53.521	Myotis_lucifugus
ENSGMOG00000014458	srsf6a	52	78.646	ENSNGAG00000017560	Srsf6	56	90.789	Nannospalax_galili
ENSGMOG00000014458	srsf6a	51	81.579	ENSNBRG00000014709	-	80	83.871	Neolamprologus_brichardi
ENSGMOG00000014458	srsf6a	52	78.646	ENSNLEG00000006524	SRSF6	56	90.789	Nomascus_leucogenys
ENSGMOG00000014458	srsf6a	55	80.734	ENSMEUG00000014615	SRSF6	60	83.516	Notamacropus_eugenii
ENSGMOG00000014458	srsf6a	99	66.033	ENSONIG00000020247	-	97	63.514	Oreochromis_niloticus
ENSGMOG00000014458	srsf6a	88	67.692	ENSONIG00000001925	-	51	86.339	Oreochromis_niloticus
ENSGMOG00000014458	srsf6a	52	61.809	ENSOCUG00000009785	-	62	65.803	Oryctolagus_cuniculus
ENSGMOG00000014458	srsf6a	51	47.340	ENSOCUG00000023999	-	85	42.174	Oryctolagus_cuniculus
ENSGMOG00000014458	srsf6a	52	78.125	ENSOGAG00000014468	SRSF6	52	82.873	Otolemur_garnettii
ENSGMOG00000014458	srsf6a	52	75.521	ENSOARG00000003117	SRSF6	52	78.333	Ovis_aries
ENSGMOG00000014458	srsf6a	52	78.125	ENSPPAG00000034327	-	52	82.873	Pan_paniscus
ENSGMOG00000014458	srsf6a	52	67.708	ENSPPAG00000043131	-	56	71.667	Pan_paniscus
ENSGMOG00000014458	srsf6a	52	77.604	ENSPPRG00000008917	SRSF6	53	82.320	Panthera_pardus
ENSGMOG00000014458	srsf6a	52	67.708	ENSPTRG00000046274	-	56	71.667	Pan_troglodytes
ENSGMOG00000014458	srsf6a	52	78.646	ENSPTRG00000044686	-	56	90.789	Pan_troglodytes
ENSGMOG00000014458	srsf6a	52	78.646	ENSPANG00000035224	SRSF6	56	90.789	Papio_anubis
ENSGMOG00000014458	srsf6a	94	79.464	ENSPKIG00000018463	-	75	89.474	Paramormyrops_kingsleyae
ENSGMOG00000014458	srsf6a	83	68.454	ENSPMGG00000014963	srsf6a	55	84.409	Periophthalmus_magnuspinnatus
ENSGMOG00000014458	srsf6a	52	80.208	ENSPCIG00000003820	SRSF6	56	90.789	Phascolarctos_cinereus
ENSGMOG00000014458	srsf6a	92	63.506	ENSPLAG00000009243	srsf6a	79	80.153	Poecilia_latipinna
ENSGMOG00000014458	srsf6a	51	81.579	ENSPMEG00000006042	SRSF6	53	85.714	Poecilia_mexicana
ENSGMOG00000014458	srsf6a	52	78.646	ENSPPYG00000011019	SRSF6	53	83.425	Pongo_abelii
ENSGMOG00000014458	srsf6a	52	77.083	ENSPCAG00000010954	SRSF6	55	81.768	Procavia_capensis
ENSGMOG00000014458	srsf6a	52	78.125	ENSPCOG00000026364	SRSF6	56	90.789	Propithecus_coquereli
ENSGMOG00000014458	srsf6a	52	77.604	ENSPVAG00000015232	SRSF6	53	82.320	Pteropus_vampyrus
ENSGMOG00000014458	srsf6a	86	62.536	ENSPNYG00000011272	-	79	83.871	Pundamilia_nyererei
ENSGMOG00000014458	srsf6a	51	81.579	ENSPNYG00000004944	-	77	83.871	Pundamilia_nyererei
ENSGMOG00000014458	srsf6a	52	77.604	ENSRNOG00000006380	Srsf6	53	82.320	Rattus_norvegicus
ENSGMOG00000014458	srsf6a	52	77.604	ENSRBIG00000041414	SRSF6	58	90.789	Rhinopithecus_bieti
ENSGMOG00000014458	srsf6a	52	78.646	ENSRROG00000029989	SRSF6	56	90.789	Rhinopithecus_roxellana
ENSGMOG00000014458	srsf6a	52	78.646	ENSSBOG00000033708	-	56	90.789	Saimiri_boliviensis_boliviensis
ENSGMOG00000014458	srsf6a	52	80.208	ENSSHAG00000012805	SRSF6	54	82.796	Sarcophilus_harrisii
ENSGMOG00000014458	srsf6a	60	69.955	ENSSFOG00015015169	SRSF6	84	82.011	Scleropages_formosus
ENSGMOG00000014458	srsf6a	94	70.868	ENSSFOG00015019681	-	77	82.383	Scleropages_formosus
ENSGMOG00000014458	srsf6a	66	78.455	ENSSMAG00000017447	-	95	57.880	Scophthalmus_maximus
ENSGMOG00000014458	srsf6a	51	84.211	ENSSDUG00000016097	srsf6a	52	85.792	Seriola_dumerili
ENSGMOG00000014458	srsf6a	51	84.211	ENSSLDG00000022841	srsf6a	53	85.792	Seriola_lalandi_dorsalis
ENSGMOG00000014458	srsf6a	51	80.526	ENSSPUG00000004967	SRSF6	56	90.789	Sphenodon_punctatus
ENSGMOG00000014458	srsf6a	51	84.656	ENSSPAG00000002362	srsf6a	64	91.765	Stegastes_partitus
ENSGMOG00000014458	srsf6a	52	77.604	ENSSSCG00000007362	SRSF6	60	82.320	Sus_scrofa
ENSGMOG00000014458	srsf6a	51	80.000	ENSTGUG00000003455	SRSF6	53	82.796	Taeniopygia_guttata
ENSGMOG00000014458	srsf6a	52	82.902	ENSTNIG00000001692	srsf6a	79	83.333	Tetraodon_nigroviridis
ENSGMOG00000014458	srsf6a	52	77.604	ENSUAMG00000003559	SRSF6	56	89.474	Ursus_americanus
ENSGMOG00000014458	srsf6a	51	79.474	ENSXMAG00000021849	srsf6a	59	82.653	Xiphophorus_maculatus