EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000015074 (Gene tree)
Gene ID: -
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 15297 bases
Position: chrGeneScaffold_3070:2331-17627
Accession: ZDB-GENE-030131-9530
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000016139	RRM_1	PF00076.22	1.9e-35	1	2
ENSGMOP00000016139	RRM_1	PF00076.22	1.9e-35	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000016552	-	1548	-	ENSGMOP00000016139	515 (aa)	-	UPI00023F3199

Gene Model

Click here to download ENSGMOG00000015074's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000015074's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000015074	pspc1	91	50.955	ENSGMOG00000011957	sfpq	61	55.206
ENSGMOG00000015074	pspc1	81	56.265	ENSGMOG00000011950	SFPQ	72	54.378

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000015074	pspc1	86	65.875	ENSG00000121390	PSPC1	75	81.183	Homo_sapiens
ENSGMOG00000015074	pspc1	100	64.850	ENSAPOG00000015946	pspc1	100	64.474	Acanthochromis_polyacanthus
ENSGMOG00000015074	pspc1	86	66.091	ENSAMEG00000017420	PSPC1	88	66.953	Ailuropoda_melanoleuca
ENSGMOG00000015074	pspc1	84	72.673	ENSACIG00000018695	pspc1	95	69.041	Amphilophus_citrinellus
ENSGMOG00000015074	pspc1	100	64.232	ENSAOCG00000005279	pspc1	100	63.858	Amphiprion_ocellaris
ENSGMOG00000015074	pspc1	100	64.595	ENSAPEG00000015927	pspc1	100	64.218	Amphiprion_percula
ENSGMOG00000015074	pspc1	84	73.273	ENSATEG00000004878	pspc1	100	54.376	Anabas_testudineus
ENSGMOG00000015074	pspc1	55	72.632	ENSAPLG00000003643	SFPQ	82	54.605	Anas_platyrhynchos
ENSGMOG00000015074	pspc1	75	63.480	ENSAPLG00000006246	PSPC1	100	64.548	Anas_platyrhynchos
ENSGMOG00000015074	pspc1	86	65.376	ENSACAG00000002093	PSPC1	88	66.524	Anolis_carolinensis
ENSGMOG00000015074	pspc1	55	68.905	ENSACAG00000013307	-	67	52.584	Anolis_carolinensis
ENSGMOG00000015074	pspc1	86	65.875	ENSANAG00000000059	PSPC1	73	83.566	Aotus_nancymaae
ENSGMOG00000015074	pspc1	84	71.429	ENSACLG00000027220	pspc1	96	66.223	Astatotilapia_calliptera
ENSGMOG00000015074	pspc1	100	63.100	ENSAMXG00000036881	pspc1	100	63.100	Astyanax_mexicanus
ENSGMOG00000015074	pspc1	92	63.600	ENSBTAG00000003934	PSPC1	88	66.595	Bos_taurus
ENSGMOG00000015074	pspc1	86	65.659	ENSCJAG00000004554	PSPC1	88	66.524	Callithrix_jacchus
ENSGMOG00000015074	pspc1	86	66.091	ENSCAFG00020002009	PSPC1	74	82.986	Canis_lupus_dingo
ENSGMOG00000015074	pspc1	92	63.600	ENSCHIG00000016708	PSPC1	88	66.595	Capra_hircus
ENSGMOG00000015074	pspc1	77	51.981	ENSTSYG00000032882	PSPC1	88	59.569	Carlito_syrichta
ENSGMOG00000015074	pspc1	86	66.091	ENSCPOG00000000395	PSPC1	74	82.986	Cavia_porcellus
ENSGMOG00000015074	pspc1	86	66.091	ENSCCAG00000033498	PSPC1	88	66.953	Cebus_capucinus
ENSGMOG00000015074	pspc1	86	65.443	ENSCATG00000036434	PSPC1	80	82.986	Cercocebus_atys
ENSGMOG00000015074	pspc1	74	64.268	ENSCLAG00000005241	PSPC1	89	65.099	Chinchilla_lanigera
ENSGMOG00000015074	pspc1	86	62.121	ENSCHOG00000008913	PSPC1	88	62.635	Choloepus_hoffmanni
ENSGMOG00000015074	pspc1	86	65.665	ENSCPBG00000020859	PSPC1	88	66.595	Chrysemys_picta_bellii
ENSGMOG00000015074	pspc1	54	60.000	ENSCSAVG00000003533	-	53	60.000	Ciona_savignyi
ENSGMOG00000015074	pspc1	59	81.592	ENSCANG00000018948	PSPC1	75	84.513	Colobus_angolensis_palliatus
ENSGMOG00000015074	pspc1	86	65.806	ENSCGRG00001018368	Pspc1	88	66.379	Cricetulus_griseus_chok1gshd
ENSGMOG00000015074	pspc1	86	65.806	ENSCGRG00000011724	Pspc1	88	66.379	Cricetulus_griseus_crigri
ENSGMOG00000015074	pspc1	100	58.175	ENSCVAG00000007679	-	100	58.365	Cyprinodon_variegatus
ENSGMOG00000015074	pspc1	100	61.567	ENSDARG00000006621	pspc1	100	65.679	Danio_rerio
ENSGMOG00000015074	pspc1	86	65.672	ENSDNOG00000011078	PSPC1	88	66.738	Dasypus_novemcinctus
ENSGMOG00000015074	pspc1	86	63.226	ENSDORG00000016050	Pspc1	88	64.086	Dipodomys_ordii
ENSGMOG00000015074	pspc1	52	83.168	ENSETEG00000000502	-	75	83.168	Echinops_telfairi
ENSGMOG00000015074	pspc1	84	56.854	ENSEBUG00000003964	-	62	65.217	Eptatretus_burgeri
ENSGMOG00000015074	pspc1	56	45.367	ENSEBUG00000010133	pspc1	81	45.367	Eptatretus_burgeri
ENSGMOG00000015074	pspc1	86	65.817	ENSEASG00005000119	PSPC1	74	82.986	Equus_asinus_asinus
ENSGMOG00000015074	pspc1	86	65.817	ENSECAG00000017286	PSPC1	74	82.986	Equus_caballus
ENSGMOG00000015074	pspc1	50	72.308	ENSEEUG00000011288	-	51	72.308	Erinaceus_europaeus
ENSGMOG00000015074	pspc1	100	68.257	ENSELUG00000003746	pspc1	100	68.148	Esox_lucius
ENSGMOG00000015074	pspc1	86	66.091	ENSFCAG00000027841	PSPC1	74	82.986	Felis_catus
ENSGMOG00000015074	pspc1	89	64.449	ENSFALG00000008750	PSPC1	88	66.595	Ficedula_albicollis
ENSGMOG00000015074	pspc1	86	65.875	ENSFDAG00000002617	PSPC1	90	66.595	Fukomys_damarensis
ENSGMOG00000015074	pspc1	86	65.665	ENSGALG00000017142	PSPC1	88	66.595	Gallus_gallus
ENSGMOG00000015074	pspc1	69	70.474	ENSGAFG00000006327	pspc1	73	70.474	Gambusia_affinis
ENSGMOG00000015074	pspc1	100	62.330	ENSGACG00000014901	pspc1	99	61.776	Gasterosteus_aculeatus
ENSGMOG00000015074	pspc1	86	65.665	ENSGAGG00000019164	PSPC1	88	66.595	Gopherus_agassizii
ENSGMOG00000015074	pspc1	55	72.281	ENSGAGG00000017325	-	67	55.381	Gopherus_agassizii
ENSGMOG00000015074	pspc1	86	65.875	ENSGGOG00000003414	PSPC1	73	82.986	Gorilla_gorilla
ENSGMOG00000015074	pspc1	100	63.826	ENSHBUG00000001139	pspc1	100	63.308	Haplochromis_burtoni
ENSGMOG00000015074	pspc1	91	63.508	ENSHGLG00000018811	PSPC1	88	66.595	Heterocephalus_glaber_female
ENSGMOG00000015074	pspc1	56	82.986	ENSHGLG00100007962	PSPC1	88	82.986	Heterocephalus_glaber_male
ENSGMOG00000015074	pspc1	80	61.779	ENSHCOG00000013251	pspc1	95	59.259	Hippocampus_comes
ENSGMOG00000015074	pspc1	100	65.741	ENSIPUG00000013192	pspc1	100	64.925	Ictalurus_punctatus
ENSGMOG00000015074	pspc1	95	61.914	ENSSTOG00000026833	PSPC1	73	82.986	Ictidomys_tridecemlineatus
ENSGMOG00000015074	pspc1	86	65.875	ENSJJAG00000018334	Pspc1	88	66.738	Jaculus_jaculus
ENSGMOG00000015074	pspc1	100	55.067	ENSKMAG00000013525	-	98	63.215	Kryptolebias_marmoratus
ENSGMOG00000015074	pspc1	99	59.704	ENSLBEG00000004474	pspc1	100	58.867	Labrus_bergylta
ENSGMOG00000015074	pspc1	100	59.294	ENSLACG00000010762	PSPC1	89	64.195	Latimeria_chalumnae
ENSGMOG00000015074	pspc1	86	69.462	ENSLOCG00000010832	pspc1	91	70.021	Lepisosteus_oculatus
ENSGMOG00000015074	pspc1	86	66.091	ENSLAFG00000010968	PSPC1	88	66.953	Loxodonta_africana
ENSGMOG00000015074	pspc1	86	65.376	ENSMFAG00000032728	PSPC1	81	82.759	Macaca_fascicularis
ENSGMOG00000015074	pspc1	86	65.376	ENSMMUG00000020262	PSPC1	78	82.759	Macaca_mulatta
ENSGMOG00000015074	pspc1	86	65.376	ENSMNEG00000027401	PSPC1	86	70.123	Macaca_nemestrina
ENSGMOG00000015074	pspc1	74	64.020	ENSMLEG00000039043	PSPC1	94	64.851	Mandrillus_leucophaeus
ENSGMOG00000015074	pspc1	100	62.222	ENSMAMG00000004333	pspc1	100	60.440	Mastacembelus_armatus
ENSGMOG00000015074	pspc1	84	71.429	ENSMZEG00005005726	pspc1	96	66.223	Maylandia_zebra
ENSGMOG00000015074	pspc1	75	63.415	ENSMGAG00000015134	PSPC1	100	64.477	Meleagris_gallopavo
ENSGMOG00000015074	pspc1	76	65.509	ENSMAUG00000021067	Pspc1	85	65.835	Mesocricetus_auratus
ENSGMOG00000015074	pspc1	86	66.810	ENSMICG00000013970	PSPC1	74	82.986	Microcebus_murinus
ENSGMOG00000015074	pspc1	86	65.591	ENSMOCG00000006060	Pspc1	89	66.453	Microtus_ochrogaster
ENSGMOG00000015074	pspc1	55	58.304	ENSMMOG00000004352	pspc1	53	55.326	Mola_mola
ENSGMOG00000015074	pspc1	84	67.574	ENSMODG00000008029	PSPC1	66	70.702	Monodelphis_domestica
ENSGMOG00000015074	pspc1	100	63.340	ENSMALG00000008914	pspc1	100	63.532	Monopterus_albus
ENSGMOG00000015074	pspc1	92	62.903	MGP_CAROLIEiJ_G0019341	Pspc1	84	77.551	Mus_caroli
ENSGMOG00000015074	pspc1	92	63.105	ENSMUSG00000021938	Pspc1	83	77.551	Mus_musculus
ENSGMOG00000015074	pspc1	92	62.749	MGP_PahariEiJ_G0030359	Pspc1	84	77.551	Mus_pahari
ENSGMOG00000015074	pspc1	92	63.105	MGP_SPRETEiJ_G0020232	Pspc1	84	77.551	Mus_spretus
ENSGMOG00000015074	pspc1	86	66.091	ENSMPUG00000013347	PSPC1	88	66.953	Mustela_putorius_furo
ENSGMOG00000015074	pspc1	86	65.880	ENSMLUG00000017663	PSPC1	88	66.595	Myotis_lucifugus
ENSGMOG00000015074	pspc1	86	65.885	ENSNGAG00000011271	Pspc1	88	66.953	Nannospalax_galili
ENSGMOG00000015074	pspc1	65	72.239	ENSNBRG00000014059	pspc1	89	65.691	Neolamprologus_brichardi
ENSGMOG00000015074	pspc1	86	65.875	ENSNLEG00000001294	PSPC1	88	66.738	Nomascus_leucogenys
ENSGMOG00000015074	pspc1	76	66.998	ENSODEG00000019012	-	88	61.290	Octodon_degus
ENSGMOG00000015074	pspc1	86	55.720	ENSODEG00000007817	-	88	56.992	Octodon_degus
ENSGMOG00000015074	pspc1	100	64.650	ENSONIG00000012010	pspc1	99	64.137	Oreochromis_niloticus
ENSGMOG00000015074	pspc1	74	64.764	ENSOANG00000009017	-	100	65.594	Ornithorhynchus_anatinus
ENSGMOG00000015074	pspc1	88	52.929	ENSOANG00000011381	-	93	54.194	Ornithorhynchus_anatinus
ENSGMOG00000015074	pspc1	86	65.875	ENSOCUG00000006153	PSPC1	88	66.595	Oryctolagus_cuniculus
ENSGMOG00000015074	pspc1	100	63.671	ENSORLG00000004232	-	100	63.027	Oryzias_latipes
ENSGMOG00000015074	pspc1	100	64.054	ENSORLG00020000578	PSPC1	100	63.410	Oryzias_latipes_hni
ENSGMOG00000015074	pspc1	100	63.671	ENSORLG00015017480	pspc1	100	63.027	Oryzias_latipes_hsok
ENSGMOG00000015074	pspc1	86	66.091	ENSOGAG00000012643	PSPC1	88	66.953	Otolemur_garnettii
ENSGMOG00000015074	pspc1	85	65.525	ENSOARG00000014163	PSPC1	94	66.667	Ovis_aries
ENSGMOG00000015074	pspc1	86	60.907	ENSPPAG00000009836	PSPC1	85	81.000	Pan_paniscus
ENSGMOG00000015074	pspc1	86	66.091	ENSPPRG00000008833	PSPC1	88	66.953	Panthera_pardus
ENSGMOG00000015074	pspc1	74	64.268	ENSPTIG00000016917	PSPC1	84	65.099	Panthera_tigris_altaica
ENSGMOG00000015074	pspc1	80	69.087	ENSPTRG00000005677	PSPC1	76	80.220	Pan_troglodytes
ENSGMOG00000015074	pspc1	86	65.443	ENSPANG00000001992	PSPC1	79	82.986	Papio_anubis
ENSGMOG00000015074	pspc1	97	63.757	ENSPKIG00000003578	pspc1	89	68.870	Paramormyrops_kingsleyae
ENSGMOG00000015074	pspc1	86	64.807	ENSPSIG00000005168	PSPC1	88	65.739	Pelodiscus_sinensis
ENSGMOG00000015074	pspc1	70	64.067	ENSPMGG00000015135	pspc1	80	73.702	Periophthalmus_magnuspinnatus
ENSGMOG00000015074	pspc1	86	65.875	ENSPEMG00000015214	Pspc1	88	66.595	Peromyscus_maniculatus_bairdii
ENSGMOG00000015074	pspc1	51	46.442	ENSPMAG00000004618	pspc1	88	45.517	Petromyzon_marinus
ENSGMOG00000015074	pspc1	91	63.340	ENSPCIG00000017680	PSPC1	88	66.738	Phascolarctos_cinereus
ENSGMOG00000015074	pspc1	99	62.333	ENSPFOG00000003362	pspc1	100	61.996	Poecilia_formosa
ENSGMOG00000015074	pspc1	100	62.500	ENSPLAG00000011540	pspc1	100	62.167	Poecilia_latipinna
ENSGMOG00000015074	pspc1	100	62.500	ENSPMEG00000008322	pspc1	100	62.167	Poecilia_mexicana
ENSGMOG00000015074	pspc1	100	61.742	ENSPREG00000007786	pspc1	100	61.407	Poecilia_reticulata
ENSGMOG00000015074	pspc1	86	65.443	ENSPPYG00000005186	PSPC1	84	70.823	Pongo_abelii
ENSGMOG00000015074	pspc1	86	64.009	ENSPCOG00000014364	PSPC1	88	64.668	Propithecus_coquereli
ENSGMOG00000015074	pspc1	86	65.032	ENSPVAG00000005036	PSPC1	89	65.517	Pteropus_vampyrus
ENSGMOG00000015074	pspc1	84	71.131	ENSPNYG00000008893	pspc1	96	65.957	Pundamilia_nyererei
ENSGMOG00000015074	pspc1	100	65.291	ENSPNAG00000016511	pspc1	100	63.536	Pygocentrus_nattereri
ENSGMOG00000015074	pspc1	92	63.232	ENSRNOG00000020782	Pspc1	86	70.823	Rattus_norvegicus
ENSGMOG00000015074	pspc1	86	65.875	ENSRBIG00000036057	PSPC1	81	82.986	Rhinopithecus_bieti
ENSGMOG00000015074	pspc1	86	65.875	ENSRROG00000036334	PSPC1	73	82.986	Rhinopithecus_roxellana
ENSGMOG00000015074	pspc1	77	56.582	ENSSBOG00000028172	PSPC1	79	80.000	Saimiri_boliviensis_boliviensis
ENSGMOG00000015074	pspc1	91	58.824	ENSSHAG00000004696	PSPC1	88	61.966	Sarcophilus_harrisii
ENSGMOG00000015074	pspc1	87	67.511	ENSSFOG00015001395	pspc1	100	68.577	Scleropages_formosus
ENSGMOG00000015074	pspc1	100	62.152	ENSSMAG00000001761	pspc1	100	61.070	Scophthalmus_maximus
ENSGMOG00000015074	pspc1	100	63.139	ENSSDUG00000010651	pspc1	100	63.063	Seriola_dumerili
ENSGMOG00000015074	pspc1	84	72.590	ENSSLDG00000004284	pspc1	100	58.588	Seriola_lalandi_dorsalis
ENSGMOG00000015074	pspc1	74	82.061	ENSSARG00000000888	PSPC1	76	82.061	Sorex_araneus
ENSGMOG00000015074	pspc1	66	81.061	ENSSPUG00000008550	PSPC1	88	58.105	Sphenodon_punctatus
ENSGMOG00000015074	pspc1	85	48.081	ENSSPUG00000001136	-	64	47.630	Sphenodon_punctatus
ENSGMOG00000015074	pspc1	100	64.074	ENSSPAG00000001921	pspc1	100	63.704	Stegastes_partitus
ENSGMOG00000015074	pspc1	86	65.875	ENSSSCG00000009569	PSPC1	74	82.639	Sus_scrofa
ENSGMOG00000015074	pspc1	86	65.517	ENSTGUG00000011295	PSPC1	99	66.452	Taeniopygia_guttata
ENSGMOG00000015074	pspc1	100	57.985	ENSTRUG00000011335	pspc1	100	57.034	Takifugu_rubripes
ENSGMOG00000015074	pspc1	100	57.476	ENSTNIG00000010358	pspc1	100	57.476	Tetraodon_nigroviridis
ENSGMOG00000015074	pspc1	86	56.264	ENSTBEG00000002361	PSPC1	88	56.264	Tupaia_belangeri
ENSGMOG00000015074	pspc1	91	63.469	ENSTTRG00000003343	PSPC1	89	66.452	Tursiops_truncatus
ENSGMOG00000015074	pspc1	56	82.986	ENSUAMG00000012309	PSPC1	83	82.986	Ursus_americanus
ENSGMOG00000015074	pspc1	86	65.875	ENSUMAG00000013993	PSPC1	81	82.639	Ursus_maritimus
ENSGMOG00000015074	pspc1	74	64.020	ENSVPAG00000010029	PSPC1	100	63.902	Vicugna_pacos
ENSGMOG00000015074	pspc1	86	66.091	ENSVVUG00000006414	PSPC1	75	82.986	Vulpes_vulpes
ENSGMOG00000015074	pspc1	69	69.468	ENSXCOG00000017438	pspc1	84	66.940	Xiphophorus_couchianus
ENSGMOG00000015074	pspc1	69	69.748	ENSXMAG00000007929	pspc1	84	67.213	Xiphophorus_maculatus