EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000016024 (Gene tree)
Gene ID: -
Gene Symbol: sf3a1
Alias: si:dz150f13.2|wu:fc38e01|wu:fc50a11|wu:fj37c05
Full Name: splicing factor 3a%2C subunit 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 11911 bases
Position: chrGeneScaffold_2075:153806-165716
Accession: ZDB-GENE-030616-156
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000017187	PRP21_like_P	PF12230.8	5.3e-50	1	1
ENSGMOP00000017187	Surp	PF01805.20	3.1e-46	1	2
ENSGMOP00000017187	Surp	PF01805.20	3.1e-46	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000017615	-	2328	-	ENSGMOP00000017187	775 (aa)	-	UPI00023F36C6

Gene Model

Click here to download ENSGMOG00000016024's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000016024's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000016024	sf3a1	97	81.323	ENSG00000099995	SF3A1	100	81.234	Homo_sapiens
ENSGMOG00000016024	sf3a1	100	88.422	ENSAPOG00000020465	sf3a1	100	88.422	Acanthochromis_polyacanthus
ENSGMOG00000016024	sf3a1	97	81.453	ENSAMEG00000007737	SF3A1	100	81.030	Ailuropoda_melanoleuca
ENSGMOG00000016024	sf3a1	100	87.659	ENSACIG00000020672	sf3a1	100	88.041	Amphilophus_citrinellus
ENSGMOG00000016024	sf3a1	100	88.295	ENSAOCG00000003060	sf3a1	100	88.295	Amphiprion_ocellaris
ENSGMOG00000016024	sf3a1	100	88.295	ENSAPEG00000010735	sf3a1	100	88.295	Amphiprion_percula
ENSGMOG00000016024	sf3a1	97	87.712	ENSATEG00000021201	sf3a1	96	88.235	Anabas_testudineus
ENSGMOG00000016024	sf3a1	96	80.105	ENSAPLG00000009057	SF3A1	99	81.558	Anas_platyrhynchos
ENSGMOG00000016024	sf3a1	100	77.669	ENSACAG00000009415	SF3A1	100	78.713	Anolis_carolinensis
ENSGMOG00000016024	sf3a1	97	81.323	ENSANAG00000032045	SF3A1	100	81.108	Aotus_nancymaae
ENSGMOG00000016024	sf3a1	100	86.752	ENSACLG00000012622	sf3a1	100	87.500	Astatotilapia_calliptera
ENSGMOG00000016024	sf3a1	99	86.896	ENSAMXG00000005382	sf3a1	99	87.277	Astyanax_mexicanus
ENSGMOG00000016024	sf3a1	99	80.485	ENSBTAG00000003390	SF3A1	100	81.108	Bos_taurus
ENSGMOG00000016024	sf3a1	88	42.905	WBGene00004188	prp-21	98	38.853	Caenorhabditis_elegans
ENSGMOG00000016024	sf3a1	97	81.193	ENSCJAG00000010370	SF3A1	100	80.982	Callithrix_jacchus
ENSGMOG00000016024	sf3a1	99	80.612	ENSCAFG00000012559	SF3A1	100	81.234	Canis_familiaris
ENSGMOG00000016024	sf3a1	99	80.612	ENSCAFG00020000838	SF3A1	100	81.234	Canis_lupus_dingo
ENSGMOG00000016024	sf3a1	99	80.485	ENSCHIG00000018642	SF3A1	100	81.108	Capra_hircus
ENSGMOG00000016024	sf3a1	97	81.453	ENSTSYG00000004739	SF3A1	100	81.234	Carlito_syrichta
ENSGMOG00000016024	sf3a1	94	65.421	ENSCAPG00000015414	SF3A1	97	66.846	Cavia_aperea
ENSGMOG00000016024	sf3a1	97	81.323	ENSCPOG00000014589	SF3A1	100	81.108	Cavia_porcellus
ENSGMOG00000016024	sf3a1	97	81.323	ENSCCAG00000032006	SF3A1	100	81.108	Cebus_capucinus
ENSGMOG00000016024	sf3a1	99	80.485	ENSCATG00000029241	SF3A1	100	81.234	Cercocebus_atys
ENSGMOG00000016024	sf3a1	97	81.064	ENSCLAG00000006508	SF3A1	100	81.108	Chinchilla_lanigera
ENSGMOG00000016024	sf3a1	99	80.485	ENSCSAG00000009470	SF3A1	100	81.234	Chlorocebus_sabaeus
ENSGMOG00000016024	sf3a1	58	88.550	ENSCHOG00000005201	SF3A1	64	87.786	Choloepus_hoffmanni
ENSGMOG00000016024	sf3a1	100	79.594	ENSCPBG00000007595	SF3A1	100	80.608	Chrysemys_picta_bellii
ENSGMOG00000016024	sf3a1	97	51.083	ENSCING00000008526	-	98	49.937	Ciona_intestinalis
ENSGMOG00000016024	sf3a1	97	49.871	ENSCSAVG00000005608	-	100	50.324	Ciona_savignyi
ENSGMOG00000016024	sf3a1	99	80.485	ENSCANG00000033564	SF3A1	100	81.234	Colobus_angolensis_palliatus
ENSGMOG00000016024	sf3a1	97	80.940	ENSCGRG00001008933	Sf3a1	100	80.605	Cricetulus_griseus_chok1gshd
ENSGMOG00000016024	sf3a1	97	80.940	ENSCGRG00000006127	Sf3a1	100	80.605	Cricetulus_griseus_crigri
ENSGMOG00000016024	sf3a1	100	86.404	ENSCSEG00000010792	sf3a1	100	86.387	Cynoglossus_semilaevis
ENSGMOG00000016024	sf3a1	100	86.369	ENSCVAG00000004560	sf3a1	100	86.497	Cyprinodon_variegatus
ENSGMOG00000016024	sf3a1	100	85.496	ENSDARG00000041887	sf3a1	100	85.860	Danio_rerio
ENSGMOG00000016024	sf3a1	97	81.995	ENSDNOG00000010629	SF3A1	100	80.905	Dasypus_novemcinctus
ENSGMOG00000016024	sf3a1	99	80.612	ENSDORG00000005613	Sf3a1	100	81.234	Dipodomys_ordii
ENSGMOG00000016024	sf3a1	95	52.659	FBgn0266917	Sf3a1	84	59.279	Drosophila_melanogaster
ENSGMOG00000016024	sf3a1	85	81.381	ENSETEG00000017194	SF3A1	100	79.060	Echinops_telfairi
ENSGMOG00000016024	sf3a1	97	67.045	ENSEBUG00000001285	sf3a1	95	68.687	Eptatretus_burgeri
ENSGMOG00000016024	sf3a1	97	81.323	ENSEASG00005010254	SF3A1	100	81.108	Equus_asinus_asinus
ENSGMOG00000016024	sf3a1	97	81.323	ENSECAG00000023962	SF3A1	100	81.108	Equus_caballus
ENSGMOG00000016024	sf3a1	77	91.803	ENSEEUG00000003159	SF3A1	83	91.803	Erinaceus_europaeus
ENSGMOG00000016024	sf3a1	100	85.678	ENSELUG00000022578	sf3a1	100	86.582	Esox_lucius
ENSGMOG00000016024	sf3a1	99	80.485	ENSFCAG00000011932	SF3A1	100	81.108	Felis_catus
ENSGMOG00000016024	sf3a1	96	79.265	ENSFALG00000006944	SF3A1	100	79.899	Ficedula_albicollis
ENSGMOG00000016024	sf3a1	97	81.453	ENSFDAG00000009560	SF3A1	100	81.234	Fukomys_damarensis
ENSGMOG00000016024	sf3a1	100	86.146	ENSFHEG00000010866	sf3a1	100	87.294	Fundulus_heteroclitus
ENSGMOG00000016024	sf3a1	96	80.079	ENSGALG00000007937	SF3A1	100	80.405	Gallus_gallus
ENSGMOG00000016024	sf3a1	100	85.372	ENSGAFG00000009111	sf3a1	100	86.752	Gambusia_affinis
ENSGMOG00000016024	sf3a1	100	86.658	ENSGACG00000011893	sf3a1	100	86.531	Gasterosteus_aculeatus
ENSGMOG00000016024	sf3a1	96	79.365	ENSGAGG00000000762	SF3A1	99	80.291	Gopherus_agassizii
ENSGMOG00000016024	sf3a1	97	81.323	ENSGGOG00000012631	SF3A1	100	81.234	Gorilla_gorilla
ENSGMOG00000016024	sf3a1	100	87.389	ENSHBUG00000015795	sf3a1	100	87.500	Haplochromis_burtoni
ENSGMOG00000016024	sf3a1	99	80.485	ENSHGLG00000007907	SF3A1	100	81.108	Heterocephalus_glaber_female
ENSGMOG00000016024	sf3a1	99	80.485	ENSHGLG00100013799	SF3A1	100	81.108	Heterocephalus_glaber_male
ENSGMOG00000016024	sf3a1	100	86.752	ENSHCOG00000015423	sf3a1	100	85.350	Hippocampus_comes
ENSGMOG00000016024	sf3a1	98	85.007	ENSIPUG00000002470	sf3a1	99	85.398	Ictalurus_punctatus
ENSGMOG00000016024	sf3a1	99	80.485	ENSSTOG00000013892	SF3A1	100	81.108	Ictidomys_tridecemlineatus
ENSGMOG00000016024	sf3a1	97	81.064	ENSJJAG00000022566	Sf3a1	100	80.881	Jaculus_jaculus
ENSGMOG00000016024	sf3a1	100	86.641	ENSKMAG00000002400	sf3a1	100	87.150	Kryptolebias_marmoratus
ENSGMOG00000016024	sf3a1	100	88.265	ENSLBEG00000022974	sf3a1	100	87.500	Labrus_bergylta
ENSGMOG00000016024	sf3a1	100	80.377	ENSLACG00000003565	SF3A1	100	81.496	Latimeria_chalumnae
ENSGMOG00000016024	sf3a1	100	84.918	ENSLOCG00000008251	sf3a1	99	85.551	Lepisosteus_oculatus
ENSGMOG00000016024	sf3a1	97	54.851	ENSLAFG00000026032	-	97	54.592	Loxodonta_africana
ENSGMOG00000016024	sf3a1	99	80.740	ENSLAFG00000000448	SF3A1	100	81.234	Loxodonta_africana
ENSGMOG00000016024	sf3a1	99	80.612	ENSMFAG00000031979	SF3A1	100	81.360	Macaca_fascicularis
ENSGMOG00000016024	sf3a1	99	80.612	ENSMMUG00000005547	SF3A1	100	81.360	Macaca_mulatta
ENSGMOG00000016024	sf3a1	99	80.740	ENSMNEG00000037229	SF3A1	100	81.486	Macaca_nemestrina
ENSGMOG00000016024	sf3a1	99	80.485	ENSMLEG00000041908	SF3A1	100	81.234	Mandrillus_leucophaeus
ENSGMOG00000016024	sf3a1	98	87.403	ENSMAMG00000006460	sf3a1	96	87.922	Mastacembelus_armatus
ENSGMOG00000016024	sf3a1	100	86.752	ENSMZEG00005009633	sf3a1	100	87.500	Maylandia_zebra
ENSGMOG00000016024	sf3a1	96	80.079	ENSMGAG00000001330	SF3A1	99	81.664	Meleagris_gallopavo
ENSGMOG00000016024	sf3a1	93	76.892	ENSMAUG00000020317	Sf3a1	100	75.032	Mesocricetus_auratus
ENSGMOG00000016024	sf3a1	99	80.485	ENSMICG00000010038	SF3A1	100	81.234	Microcebus_murinus
ENSGMOG00000016024	sf3a1	97	80.804	ENSMOCG00000008438	Sf3a1	100	80.730	Microtus_ochrogaster
ENSGMOG00000016024	sf3a1	100	84.566	ENSMMOG00000015588	sf3a1	99	84.949	Mola_mola
ENSGMOG00000016024	sf3a1	99	81.806	ENSMODG00000009270	SF3A1	100	80.779	Monodelphis_domestica
ENSGMOG00000016024	sf3a1	100	87.039	ENSMALG00000000148	sf3a1	100	87.421	Monopterus_albus
ENSGMOG00000016024	sf3a1	97	81.070	MGP_CAROLIEiJ_G0016029	Sf3a1	99	80.531	Mus_caroli
ENSGMOG00000016024	sf3a1	97	81.070	ENSMUSG00000002129	Sf3a1	99	80.531	Mus_musculus
ENSGMOG00000016024	sf3a1	97	81.201	MGP_PahariEiJ_G0016862	Sf3a1	99	80.657	Mus_pahari
ENSGMOG00000016024	sf3a1	97	81.070	MGP_SPRETEiJ_G0016870	Sf3a1	99	80.531	Mus_spretus
ENSGMOG00000016024	sf3a1	99	80.995	ENSMPUG00000013144	SF3A1	100	81.360	Mustela_putorius_furo
ENSGMOG00000016024	sf3a1	99	80.485	ENSMLUG00000002139	SF3A1	100	81.108	Myotis_lucifugus
ENSGMOG00000016024	sf3a1	98	80.410	ENSNGAG00000016977	Sf3a1	100	81.108	Nannospalax_galili
ENSGMOG00000016024	sf3a1	100	87.039	ENSNBRG00000016642	sf3a1	100	87.150	Neolamprologus_brichardi
ENSGMOG00000016024	sf3a1	99	80.485	ENSNLEG00000003686	SF3A1	100	81.234	Nomascus_leucogenys
ENSGMOG00000016024	sf3a1	93	73.713	ENSMEUG00000008741	SF3A1	100	72.739	Notamacropus_eugenii
ENSGMOG00000016024	sf3a1	97	81.971	ENSOPRG00000016636	SF3A1	100	81.635	Ochotona_princeps
ENSGMOG00000016024	sf3a1	97	81.323	ENSODEG00000002571	SF3A1	100	81.211	Octodon_degus
ENSGMOG00000016024	sf3a1	100	87.023	ENSONIG00000010848	sf3a1	100	87.134	Oreochromis_niloticus
ENSGMOG00000016024	sf3a1	97	81.323	ENSOCUG00000007633	SF3A1	100	81.108	Oryctolagus_cuniculus
ENSGMOG00000016024	sf3a1	96	85.979	ENSORLG00000013050	sf3a1	99	86.702	Oryzias_latipes
ENSGMOG00000016024	sf3a1	99	84.123	ENSORLG00020003236	sf3a1	97	84.496	Oryzias_latipes_hni
ENSGMOG00000016024	sf3a1	100	85.805	ENSORLG00015017411	sf3a1	100	86.497	Oryzias_latipes_hsok
ENSGMOG00000016024	sf3a1	100	86.132	ENSOMEG00000013362	sf3a1	100	86.497	Oryzias_melastigma
ENSGMOG00000016024	sf3a1	97	81.323	ENSOGAG00000012931	SF3A1	100	81.234	Otolemur_garnettii
ENSGMOG00000016024	sf3a1	99	79.923	ENSOARG00000006849	SF3A1	100	80.556	Ovis_aries
ENSGMOG00000016024	sf3a1	97	80.026	ENSPPAG00000041790	SF3A1	100	79.548	Pan_paniscus
ENSGMOG00000016024	sf3a1	99	80.485	ENSPPRG00000004391	SF3A1	100	81.108	Panthera_pardus
ENSGMOG00000016024	sf3a1	97	81.193	ENSPTIG00000000844	SF3A1	99	82.723	Panthera_tigris_altaica
ENSGMOG00000016024	sf3a1	97	81.323	ENSPTRG00000014240	SF3A1	100	81.234	Pan_troglodytes
ENSGMOG00000016024	sf3a1	99	80.485	ENSPANG00000020772	SF3A1	100	81.234	Papio_anubis
ENSGMOG00000016024	sf3a1	80	92.308	ENSPSIG00000012803	SF3A1	99	92.308	Pelodiscus_sinensis
ENSGMOG00000016024	sf3a1	97	87.599	ENSPMGG00000023096	sf3a1	100	87.879	Periophthalmus_magnuspinnatus
ENSGMOG00000016024	sf3a1	97	81.070	ENSPEMG00000009494	Sf3a1	100	80.730	Peromyscus_maniculatus_bairdii
ENSGMOG00000016024	sf3a1	69	76.740	ENSPMAG00000007139	-	93	77.473	Petromyzon_marinus
ENSGMOG00000016024	sf3a1	99	82.065	ENSPCIG00000022692	SF3A1	100	81.439	Phascolarctos_cinereus
ENSGMOG00000016024	sf3a1	100	75.849	ENSPFOG00000016768	sf3a1	100	77.284	Poecilia_formosa
ENSGMOG00000016024	sf3a1	100	85.660	ENSPLAG00000017268	sf3a1	100	86.929	Poecilia_latipinna
ENSGMOG00000016024	sf3a1	96	86.556	ENSPMEG00000019811	sf3a1	100	86.930	Poecilia_mexicana
ENSGMOG00000016024	sf3a1	100	85.535	ENSPREG00000010347	sf3a1	100	86.658	Poecilia_reticulata
ENSGMOG00000016024	sf3a1	99	80.485	ENSPPYG00000011707	SF3A1	100	81.234	Pongo_abelii
ENSGMOG00000016024	sf3a1	58	83.471	ENSPCAG00000003266	SF3A1	57	83.884	Procavia_capensis
ENSGMOG00000016024	sf3a1	99	80.230	ENSPCOG00000026630	SF3A1	100	80.982	Propithecus_coquereli
ENSGMOG00000016024	sf3a1	95	80.611	ENSPVAG00000017719	SF3A1	94	82.172	Pteropus_vampyrus
ENSGMOG00000016024	sf3a1	100	87.134	ENSPNYG00000018706	sf3a1	100	87.245	Pundamilia_nyererei
ENSGMOG00000016024	sf3a1	99	85.227	ENSPNAG00000003721	sf3a1	99	86.369	Pygocentrus_nattereri
ENSGMOG00000016024	sf3a1	98	80.128	ENSRNOG00000005218	Sf3a1	99	80.784	Rattus_norvegicus
ENSGMOG00000016024	sf3a1	99	80.485	ENSRBIG00000032167	SF3A1	100	81.234	Rhinopithecus_bieti
ENSGMOG00000016024	sf3a1	99	80.485	ENSRROG00000044908	SF3A1	100	81.234	Rhinopithecus_roxellana
ENSGMOG00000016024	sf3a1	93	81.107	ENSSBOG00000021960	SF3A1	97	83.308	Saimiri_boliviensis_boliviensis
ENSGMOG00000016024	sf3a1	97	79.817	ENSSHAG00000003666	SF3A1	97	79.922	Sarcophilus_harrisii
ENSGMOG00000016024	sf3a1	100	83.709	ENSSFOG00015004579	sf3a1	100	86.094	Scleropages_formosus
ENSGMOG00000016024	sf3a1	100	86.701	ENSSMAG00000004275	sf3a1	100	86.061	Scophthalmus_maximus
ENSGMOG00000016024	sf3a1	100	88.295	ENSSDUG00000022219	sf3a1	100	88.153	Seriola_dumerili
ENSGMOG00000016024	sf3a1	100	88.295	ENSSLDG00000012642	sf3a1	100	88.153	Seriola_lalandi_dorsalis
ENSGMOG00000016024	sf3a1	97	78.080	ENSSARG00000005960	SF3A1	99	79.581	Sorex_araneus
ENSGMOG00000016024	sf3a1	97	80.965	ENSSPUG00000018863	SF3A1	100	80.100	Sphenodon_punctatus
ENSGMOG00000016024	sf3a1	100	88.550	ENSSPAG00000011856	sf3a1	100	88.280	Stegastes_partitus
ENSGMOG00000016024	sf3a1	99	80.995	ENSSSCG00000010002	SF3A1	100	81.108	Sus_scrofa
ENSGMOG00000016024	sf3a1	96	80.131	ENSTGUG00000010547	SF3A1	100	81.582	Taeniopygia_guttata
ENSGMOG00000016024	sf3a1	100	86.607	ENSTRUG00000006118	sf3a1	100	85.332	Takifugu_rubripes
ENSGMOG00000016024	sf3a1	62	83.271	ENSTNIG00000005713	sf3a1	90	89.381	Tetraodon_nigroviridis
ENSGMOG00000016024	sf3a1	97	75.097	ENSTBEG00000012771	SF3A1	100	75.063	Tupaia_belangeri
ENSGMOG00000016024	sf3a1	99	80.127	ENSTTRG00000001535	SF3A1	100	81.006	Tursiops_truncatus
ENSGMOG00000016024	sf3a1	99	78.616	ENSUAMG00000006750	SF3A1	99	80.076	Ursus_americanus
ENSGMOG00000016024	sf3a1	100	80.427	ENSUMAG00000016665	SF3A1	98	82.895	Ursus_maritimus
ENSGMOG00000016024	sf3a1	99	80.612	ENSVVUG00000003075	SF3A1	100	81.234	Vulpes_vulpes
ENSGMOG00000016024	sf3a1	100	76.730	ENSXETG00000016144	sf3a1	100	77.358	Xenopus_tropicalis
ENSGMOG00000016024	sf3a1	100	85.372	ENSXCOG00000015653	sf3a1	100	87.134	Xiphophorus_couchianus
ENSGMOG00000016024	sf3a1	100	85.372	ENSXMAG00000002753	sf3a1	100	87.134	Xiphophorus_maculatus