EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000016585 (Gene tree)
Gene ID: -
Gene Symbol: smndc1
Alias: TDRD10|spf30|wu:fb37h07|wu:fc23a07
Full Name: survival motor neuron domain containing 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 2692 bases
Position: chrGeneScaffold_718:385555-388246
Accession: ZDB-GENE-030131-614
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000017798	TUDOR	PF00567.24	1.8e-07	1	1
ENSGMOP00000017798	SMN	PF06003.12	3.2e-17	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000018237	-	711	-	ENSGMOP00000017798	236 (aa)	-	UPI00023F3966

Gene Model

Click here to download ENSGMOG00000016585's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000016585's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000016585	smndc1	100	76.891	ENSG00000119953	SMNDC1	100	76.891	Homo_sapiens
ENSGMOG00000016585	smndc1	100	85.294	ENSAPOG00000021772	smndc1	100	85.294	Acanthochromis_polyacanthus
ENSGMOG00000016585	smndc1	100	76.471	ENSAMEG00000005251	SMNDC1	100	76.471	Ailuropoda_melanoleuca
ENSGMOG00000016585	smndc1	100	83.613	ENSACIG00000004819	smndc1	100	83.613	Amphilophus_citrinellus
ENSGMOG00000016585	smndc1	100	85.714	ENSAOCG00000017869	smndc1	100	85.714	Amphiprion_ocellaris
ENSGMOG00000016585	smndc1	100	85.714	ENSAPEG00000007752	smndc1	100	85.714	Amphiprion_percula
ENSGMOG00000016585	smndc1	100	84.454	ENSATEG00000006830	smndc1	100	84.454	Anabas_testudineus
ENSGMOG00000016585	smndc1	83	75.758	ENSAPLG00000004322	SMNDC1	100	75.758	Anas_platyrhynchos
ENSGMOG00000016585	smndc1	100	76.891	ENSACAG00000005983	SMNDC1	100	76.891	Anolis_carolinensis
ENSGMOG00000016585	smndc1	100	76.471	ENSANAG00000032875	SMNDC1	100	76.471	Aotus_nancymaae
ENSGMOG00000016585	smndc1	100	81.933	ENSACLG00000016360	smndc1	100	81.933	Astatotilapia_calliptera
ENSGMOG00000016585	smndc1	100	80.169	ENSAMXG00000020310	smndc1	100	80.169	Astyanax_mexicanus
ENSGMOG00000016585	smndc1	100	76.050	ENSBTAG00000000551	SMNDC1	100	76.050	Bos_taurus
ENSGMOG00000016585	smndc1	100	76.471	ENSCJAG00000018624	SMNDC1	100	76.471	Callithrix_jacchus
ENSGMOG00000016585	smndc1	100	76.471	ENSCAFG00000010720	SMNDC1	100	76.471	Canis_familiaris
ENSGMOG00000016585	smndc1	100	76.471	ENSCAFG00020011913	SMNDC1	100	76.471	Canis_lupus_dingo
ENSGMOG00000016585	smndc1	100	76.050	ENSCHIG00000010604	SMNDC1	100	76.050	Capra_hircus
ENSGMOG00000016585	smndc1	100	76.891	ENSTSYG00000026454	SMNDC1	100	76.891	Carlito_syrichta
ENSGMOG00000016585	smndc1	84	74.129	ENSCAPG00000009132	SMNDC1	100	74.129	Cavia_aperea
ENSGMOG00000016585	smndc1	100	76.471	ENSCPOG00000031666	SMNDC1	100	76.471	Cavia_porcellus
ENSGMOG00000016585	smndc1	100	76.471	ENSCCAG00000021793	SMNDC1	100	76.471	Cebus_capucinus
ENSGMOG00000016585	smndc1	100	76.050	ENSCATG00000035910	SMNDC1	100	76.050	Cercocebus_atys
ENSGMOG00000016585	smndc1	100	76.471	ENSCLAG00000002838	SMNDC1	100	76.471	Chinchilla_lanigera
ENSGMOG00000016585	smndc1	100	76.471	ENSCSAG00000005169	SMNDC1	100	76.471	Chlorocebus_sabaeus
ENSGMOG00000016585	smndc1	81	73.575	ENSCHOG00000002936	SMNDC1	100	73.575	Choloepus_hoffmanni
ENSGMOG00000016585	smndc1	100	77.311	ENSCPBG00000012837	SMNDC1	100	77.311	Chrysemys_picta_bellii
ENSGMOG00000016585	smndc1	100	60.593	ENSCANG00000036994	-	100	60.593	Colobus_angolensis_palliatus
ENSGMOG00000016585	smndc1	100	70.168	ENSCANG00000034620	-	100	70.168	Colobus_angolensis_palliatus
ENSGMOG00000016585	smndc1	100	76.471	ENSCANG00000031720	-	100	76.471	Colobus_angolensis_palliatus
ENSGMOG00000016585	smndc1	100	76.050	ENSCGRG00001012973	Smndc1	100	76.050	Cricetulus_griseus_chok1gshd
ENSGMOG00000016585	smndc1	100	76.050	ENSCGRG00000012396	Smndc1	100	76.050	Cricetulus_griseus_crigri
ENSGMOG00000016585	smndc1	100	83.475	ENSCSEG00000015621	smndc1	100	83.475	Cynoglossus_semilaevis
ENSGMOG00000016585	smndc1	100	83.193	ENSCVAG00000020432	smndc1	100	83.193	Cyprinodon_variegatus
ENSGMOG00000016585	smndc1	100	81.857	ENSDARG00000056235	smndc1	100	81.857	Danio_rerio
ENSGMOG00000016585	smndc1	100	76.471	ENSDNOG00000016387	SMNDC1	83	76.471	Dasypus_novemcinctus
ENSGMOG00000016585	smndc1	100	76.471	ENSDORG00000023715	Smndc1	100	76.471	Dipodomys_ordii
ENSGMOG00000016585	smndc1	97	42.629	FBgn0039977	CG17454	98	42.629	Drosophila_melanogaster
ENSGMOG00000016585	smndc1	100	64.315	ENSEBUG00000010929	smndc1	100	65.560	Eptatretus_burgeri
ENSGMOG00000016585	smndc1	100	76.471	ENSEASG00005014930	SMNDC1	100	76.471	Equus_asinus_asinus
ENSGMOG00000016585	smndc1	100	76.471	ENSECAG00000029973	SMNDC1	100	76.471	Equus_caballus
ENSGMOG00000016585	smndc1	61	84.375	ENSEEUG00000013407	-	72	84.375	Erinaceus_europaeus
ENSGMOG00000016585	smndc1	100	85.169	ENSELUG00000000227	smndc1	100	85.169	Esox_lucius
ENSGMOG00000016585	smndc1	100	76.471	ENSFCAG00000027353	SMNDC1	100	76.471	Felis_catus
ENSGMOG00000016585	smndc1	100	76.471	ENSFALG00000002306	SMNDC1	100	76.471	Ficedula_albicollis
ENSGMOG00000016585	smndc1	100	76.891	ENSFDAG00000006468	SMNDC1	100	76.891	Fukomys_damarensis
ENSGMOG00000016585	smndc1	100	84.454	ENSFHEG00000020150	smndc1	100	84.454	Fundulus_heteroclitus
ENSGMOG00000016585	smndc1	100	76.471	ENSGALG00000008561	SMNDC1	100	76.471	Gallus_gallus
ENSGMOG00000016585	smndc1	100	81.513	ENSGAFG00000011582	smndc1	100	81.513	Gambusia_affinis
ENSGMOG00000016585	smndc1	100	85.714	ENSGACG00000009468	smndc1	100	85.714	Gasterosteus_aculeatus
ENSGMOG00000016585	smndc1	100	77.311	ENSGAGG00000024547	SMNDC1	100	77.311	Gopherus_agassizii
ENSGMOG00000016585	smndc1	100	76.471	ENSGGOG00000010071	SMNDC1	100	76.471	Gorilla_gorilla
ENSGMOG00000016585	smndc1	100	81.933	ENSHBUG00000017596	smndc1	100	81.933	Haplochromis_burtoni
ENSGMOG00000016585	smndc1	100	76.891	ENSHGLG00000013390	-	100	76.891	Heterocephalus_glaber_female
ENSGMOG00000016585	smndc1	100	55.967	ENSHGLG00000001157	-	100	52.479	Heterocephalus_glaber_female
ENSGMOG00000016585	smndc1	100	62.449	ENSHGLG00100004278	-	100	60.484	Heterocephalus_glaber_male
ENSGMOG00000016585	smndc1	100	76.891	ENSHGLG00100004814	-	100	76.891	Heterocephalus_glaber_male
ENSGMOG00000016585	smndc1	100	79.079	ENSHCOG00000000783	smndc1	100	79.079	Hippocampus_comes
ENSGMOG00000016585	smndc1	100	83.122	ENSIPUG00000004217	smndc1	100	83.122	Ictalurus_punctatus
ENSGMOG00000016585	smndc1	100	76.891	ENSSTOG00000006088	SMNDC1	100	76.891	Ictidomys_tridecemlineatus
ENSGMOG00000016585	smndc1	100	76.471	ENSJJAG00000019974	Smndc1	100	76.471	Jaculus_jaculus
ENSGMOG00000016585	smndc1	100	82.353	ENSKMAG00000020134	smndc1	100	82.353	Kryptolebias_marmoratus
ENSGMOG00000016585	smndc1	100	82.700	ENSLBEG00000004598	smndc1	100	82.700	Labrus_bergylta
ENSGMOG00000016585	smndc1	100	78.571	ENSLACG00000007784	SMNDC1	100	78.571	Latimeria_chalumnae
ENSGMOG00000016585	smndc1	100	82.700	ENSLOCG00000012355	smndc1	100	82.700	Lepisosteus_oculatus
ENSGMOG00000016585	smndc1	100	76.050	ENSLAFG00000014353	SMNDC1	100	76.050	Loxodonta_africana
ENSGMOG00000016585	smndc1	100	64.831	ENSMFAG00000038381	-	100	63.983	Macaca_fascicularis
ENSGMOG00000016585	smndc1	100	76.471	ENSMFAG00000002433	-	100	76.471	Macaca_fascicularis
ENSGMOG00000016585	smndc1	100	64.831	ENSMMUG00000045875	-	100	63.983	Macaca_mulatta
ENSGMOG00000016585	smndc1	100	76.471	ENSMMUG00000007775	SMNDC1	100	76.471	Macaca_mulatta
ENSGMOG00000016585	smndc1	100	76.471	ENSMNEG00000042963	-	100	76.471	Macaca_nemestrina
ENSGMOG00000016585	smndc1	100	66.807	ENSMNEG00000033853	-	100	66.807	Macaca_nemestrina
ENSGMOG00000016585	smndc1	100	71.667	ENSMLEG00000040236	SMNDC1	100	71.308	Mandrillus_leucophaeus
ENSGMOG00000016585	smndc1	99	76.987	ENSMAMG00000018233	smndc1	98	76.987	Mastacembelus_armatus
ENSGMOG00000016585	smndc1	100	81.933	ENSMZEG00005027510	smndc1	100	81.933	Maylandia_zebra
ENSGMOG00000016585	smndc1	99	67.647	ENSMGAG00000010777	SMNDC1	84	76.000	Meleagris_gallopavo
ENSGMOG00000016585	smndc1	100	76.471	ENSMAUG00000012243	-	100	76.471	Mesocricetus_auratus
ENSGMOG00000016585	smndc1	99	62.553	ENSMAUG00000005459	-	93	62.447	Mesocricetus_auratus
ENSGMOG00000016585	smndc1	100	65.823	ENSMICG00000031640	-	100	65.823	Microcebus_murinus
ENSGMOG00000016585	smndc1	100	76.050	ENSMICG00000027336	-	100	76.050	Microcebus_murinus
ENSGMOG00000016585	smndc1	100	76.050	ENSMOCG00000002458	Smndc1	100	76.050	Microtus_ochrogaster
ENSGMOG00000016585	smndc1	100	85.294	ENSMMOG00000008856	smndc1	100	85.294	Mola_mola
ENSGMOG00000016585	smndc1	100	77.311	ENSMODG00000010542	SMNDC1	100	77.311	Monodelphis_domestica
ENSGMOG00000016585	smndc1	100	83.613	ENSMALG00000017598	smndc1	100	83.613	Monopterus_albus
ENSGMOG00000016585	smndc1	100	76.891	MGP_CAROLIEiJ_G0023072	Smndc1	100	76.891	Mus_caroli
ENSGMOG00000016585	smndc1	100	76.891	ENSMUSG00000025024	Smndc1	100	76.891	Mus_musculus
ENSGMOG00000016585	smndc1	100	77.311	MGP_PahariEiJ_G0014560	Smndc1	100	77.311	Mus_pahari
ENSGMOG00000016585	smndc1	100	76.891	MGP_SPRETEiJ_G0023993	Smndc1	100	76.891	Mus_spretus
ENSGMOG00000016585	smndc1	100	76.471	ENSMPUG00000002089	SMNDC1	100	76.471	Mustela_putorius_furo
ENSGMOG00000016585	smndc1	100	76.471	ENSMLUG00000016007	SMNDC1	100	76.471	Myotis_lucifugus
ENSGMOG00000016585	smndc1	100	76.050	ENSNGAG00000006833	Smndc1	100	76.050	Nannospalax_galili
ENSGMOG00000016585	smndc1	100	81.933	ENSNBRG00000017089	smndc1	100	81.933	Neolamprologus_brichardi
ENSGMOG00000016585	smndc1	100	76.471	ENSNLEG00000015471	SMNDC1	100	76.471	Nomascus_leucogenys
ENSGMOG00000016585	smndc1	82	56.061	ENSMEUG00000010120	-	82	60.606	Notamacropus_eugenii
ENSGMOG00000016585	smndc1	100	76.471	ENSOPRG00000015348	SMNDC1	100	76.471	Ochotona_princeps
ENSGMOG00000016585	smndc1	100	55.932	ENSODEG00000007594	-	100	52.966	Octodon_degus
ENSGMOG00000016585	smndc1	100	81.933	ENSONIG00000000434	smndc1	100	81.933	Oreochromis_niloticus
ENSGMOG00000016585	smndc1	100	77.731	ENSOANG00000001598	SMNDC1	100	77.731	Ornithorhynchus_anatinus
ENSGMOG00000016585	smndc1	100	76.471	ENSOCUG00000008145	-	100	76.471	Oryctolagus_cuniculus
ENSGMOG00000016585	smndc1	100	57.384	ENSOCUG00000012274	-	100	59.072	Oryctolagus_cuniculus
ENSGMOG00000016585	smndc1	100	81.513	ENSORLG00000005934	smndc1	95	81.513	Oryzias_latipes
ENSGMOG00000016585	smndc1	100	81.513	ENSORLG00020008796	smndc1	95	81.513	Oryzias_latipes_hni
ENSGMOG00000016585	smndc1	100	81.513	ENSORLG00015013666	smndc1	100	81.513	Oryzias_latipes_hsok
ENSGMOG00000016585	smndc1	100	78.481	ENSOMEG00000007590	smndc1	100	78.481	Oryzias_melastigma
ENSGMOG00000016585	smndc1	100	76.050	ENSOGAG00000000571	SMNDC1	100	76.050	Otolemur_garnettii
ENSGMOG00000016585	smndc1	100	76.050	ENSOARG00000009500	SMNDC1	100	76.050	Ovis_aries
ENSGMOG00000016585	smndc1	100	76.471	ENSPPAG00000027815	SMNDC1	100	76.471	Pan_paniscus
ENSGMOG00000016585	smndc1	100	76.471	ENSPPRG00000013749	SMNDC1	100	76.471	Panthera_pardus
ENSGMOG00000016585	smndc1	100	76.471	ENSPTIG00000011451	SMNDC1	100	76.471	Panthera_tigris_altaica
ENSGMOG00000016585	smndc1	100	76.471	ENSPTRG00000002937	SMNDC1	100	76.471	Pan_troglodytes
ENSGMOG00000016585	smndc1	100	72.881	ENSPANG00000031346	-	100	72.881	Papio_anubis
ENSGMOG00000016585	smndc1	100	76.471	ENSPANG00000020805	-	100	76.471	Papio_anubis
ENSGMOG00000016585	smndc1	100	80.169	ENSPKIG00000017164	smndc1	100	80.169	Paramormyrops_kingsleyae
ENSGMOG00000016585	smndc1	100	77.731	ENSPSIG00000012257	SMNDC1	100	77.731	Pelodiscus_sinensis
ENSGMOG00000016585	smndc1	100	79.661	ENSPMGG00000015651	smndc1	100	78.814	Periophthalmus_magnuspinnatus
ENSGMOG00000016585	smndc1	100	76.471	ENSPEMG00000022058	Smndc1	100	76.471	Peromyscus_maniculatus_bairdii
ENSGMOG00000016585	smndc1	100	61.224	ENSPMAG00000007705	smndc1	100	61.224	Petromyzon_marinus
ENSGMOG00000016585	smndc1	100	77.311	ENSPCIG00000018419	SMNDC1	100	77.311	Phascolarctos_cinereus
ENSGMOG00000016585	smndc1	95	59.556	ENSPCIG00000009693	-	98	59.556	Phascolarctos_cinereus
ENSGMOG00000016585	smndc1	100	82.773	ENSPFOG00000017113	smndc1	100	82.773	Poecilia_formosa
ENSGMOG00000016585	smndc1	100	82.773	ENSPLAG00000010372	smndc1	100	82.773	Poecilia_latipinna
ENSGMOG00000016585	smndc1	100	82.773	ENSPMEG00000012288	smndc1	100	82.773	Poecilia_mexicana
ENSGMOG00000016585	smndc1	100	81.513	ENSPREG00000012279	smndc1	100	81.513	Poecilia_reticulata
ENSGMOG00000016585	smndc1	100	76.471	ENSPPYG00000002643	SMNDC1	100	76.471	Pongo_abelii
ENSGMOG00000016585	smndc1	81	72.539	ENSPCAG00000016183	SMNDC1	100	72.539	Procavia_capensis
ENSGMOG00000016585	smndc1	100	76.050	ENSPCOG00000024343	SMNDC1	100	76.050	Propithecus_coquereli
ENSGMOG00000016585	smndc1	78	87.500	ENSPVAG00000004368	SMNDC1	77	87.500	Pteropus_vampyrus
ENSGMOG00000016585	smndc1	83	80.808	ENSPNYG00000024093	smndc1	86	80.808	Pundamilia_nyererei
ENSGMOG00000016585	smndc1	100	80.169	ENSPNAG00000025285	smndc1	100	80.169	Pygocentrus_nattereri
ENSGMOG00000016585	smndc1	100	76.891	ENSRNOG00000014833	Smndc1	100	76.891	Rattus_norvegicus
ENSGMOG00000016585	smndc1	100	76.050	ENSRBIG00000000224	-	100	76.050	Rhinopithecus_bieti
ENSGMOG00000016585	smndc1	100	62.712	ENSRBIG00000032452	-	100	62.712	Rhinopithecus_bieti
ENSGMOG00000016585	smndc1	100	63.136	ENSRROG00000039125	-	100	63.136	Rhinopithecus_roxellana
ENSGMOG00000016585	smndc1	100	76.471	ENSRROG00000044992	-	100	76.471	Rhinopithecus_roxellana
ENSGMOG00000016585	smndc1	100	76.471	ENSSBOG00000026789	SMNDC1	100	76.471	Saimiri_boliviensis_boliviensis
ENSGMOG00000016585	smndc1	100	77.311	ENSSHAG00000015189	SMNDC1	100	77.311	Sarcophilus_harrisii
ENSGMOG00000016585	smndc1	100	81.013	ENSSFOG00015008311	smndc1	100	81.013	Scleropages_formosus
ENSGMOG00000016585	smndc1	100	83.613	ENSSMAG00000020118	smndc1	100	83.613	Scophthalmus_maximus
ENSGMOG00000016585	smndc1	100	85.714	ENSSDUG00000015330	smndc1	100	85.714	Seriola_dumerili
ENSGMOG00000016585	smndc1	100	85.714	ENSSLDG00000017325	smndc1	100	85.714	Seriola_lalandi_dorsalis
ENSGMOG00000016585	smndc1	100	76.471	ENSSARG00000006063	SMNDC1	100	76.471	Sorex_araneus
ENSGMOG00000016585	smndc1	100	76.891	ENSSPUG00000004574	SMNDC1	100	76.891	Sphenodon_punctatus
ENSGMOG00000016585	smndc1	100	84.034	ENSSPAG00000000338	smndc1	100	84.034	Stegastes_partitus
ENSGMOG00000016585	smndc1	100	76.471	ENSSSCG00000030507	SMNDC1	100	76.471	Sus_scrofa
ENSGMOG00000016585	smndc1	100	76.471	ENSTGUG00000010599	SMNDC1	100	76.471	Taeniopygia_guttata
ENSGMOG00000016585	smndc1	100	80.672	ENSTRUG00000023281	smndc1	100	80.672	Takifugu_rubripes
ENSGMOG00000016585	smndc1	100	79.832	ENSTNIG00000013331	smndc1	100	79.832	Tetraodon_nigroviridis
ENSGMOG00000016585	smndc1	100	76.471	ENSTBEG00000014337	SMNDC1	100	76.471	Tupaia_belangeri
ENSGMOG00000016585	smndc1	100	76.471	ENSUAMG00000008142	SMNDC1	100	76.471	Ursus_americanus
ENSGMOG00000016585	smndc1	100	76.471	ENSUMAG00000023722	SMNDC1	100	76.471	Ursus_maritimus
ENSGMOG00000016585	smndc1	83	75.758	ENSVPAG00000003402	SMNDC1	100	75.758	Vicugna_pacos
ENSGMOG00000016585	smndc1	100	76.471	ENSVVUG00000007820	SMNDC1	100	76.471	Vulpes_vulpes
ENSGMOG00000016585	smndc1	57	64.925	ENSXETG00000015415	SMNDC1	94	64.925	Xenopus_tropicalis
ENSGMOG00000016585	smndc1	100	81.780	ENSXCOG00000009159	smndc1	100	81.780	Xiphophorus_couchianus
ENSGMOG00000016585	smndc1	100	81.933	ENSXMAG00000012755	smndc1	100	81.933	Xiphophorus_maculatus