EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000016651 (Gene tree)
Gene ID: -
Gene Symbol: lsm1
Alias: zgc:101136
Full Name: LSM1%2C U6 small nuclear RNA associated
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 3032 bases
Position: chrGeneScaffold_3222:181354-184385
Accession: ZDB-GENE-040801-68
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000017869	LSM	PF01423.22	2.7e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000018308	-	411	-	ENSGMOP00000017869	136 (aa)	-	UPI00023F3A91

Gene Model

Click here to download ENSGMOG00000016651's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000016651's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000016651	lsm1	98	83.459	ENSG00000175324	LSM1	100	83.459	Homo_sapiens
ENSGMOG00000016651	lsm1	98	95.489	ENSAPOG00000010833	lsm1	100	95.489	Acanthochromis_polyacanthus
ENSGMOG00000016651	lsm1	98	83.459	ENSAMEG00000011141	LSM1	100	83.459	Ailuropoda_melanoleuca
ENSGMOG00000016651	lsm1	57	97.403	ENSACIG00000019593	lsm1	64	97.403	Amphilophus_citrinellus
ENSGMOG00000016651	lsm1	98	95.489	ENSAOCG00000017096	lsm1	100	95.489	Amphiprion_ocellaris
ENSGMOG00000016651	lsm1	98	95.489	ENSAOCG00000017997	-	100	95.489	Amphiprion_ocellaris
ENSGMOG00000016651	lsm1	98	95.489	ENSAPEG00000011669	lsm1	100	95.489	Amphiprion_percula
ENSGMOG00000016651	lsm1	98	96.992	ENSATEG00000022266	lsm1	100	96.992	Anabas_testudineus
ENSGMOG00000016651	lsm1	98	83.459	ENSANAG00000027785	LSM1	100	83.459	Aotus_nancymaae
ENSGMOG00000016651	lsm1	98	97.744	ENSACLG00000011400	lsm1	100	97.744	Astatotilapia_calliptera
ENSGMOG00000016651	lsm1	98	83.459	ENSAMXG00000005441	lsm1	100	83.459	Astyanax_mexicanus
ENSGMOG00000016651	lsm1	98	82.707	ENSBTAG00000001612	LSM1	100	82.707	Bos_taurus
ENSGMOG00000016651	lsm1	85	49.153	WBGene00003076	lsm-1	90	49.153	Caenorhabditis_elegans
ENSGMOG00000016651	lsm1	98	82.707	ENSCJAG00000048015	LSM1	100	82.707	Callithrix_jacchus
ENSGMOG00000016651	lsm1	98	83.459	ENSCAFG00000006113	LSM1	100	83.459	Canis_familiaris
ENSGMOG00000016651	lsm1	98	83.459	ENSCAFG00020001822	LSM1	100	83.459	Canis_lupus_dingo
ENSGMOG00000016651	lsm1	98	83.459	ENSCHIG00000013194	LSM1	100	83.459	Capra_hircus
ENSGMOG00000016651	lsm1	98	83.459	ENSTSYG00000010394	LSM1	100	83.459	Carlito_syrichta
ENSGMOG00000016651	lsm1	98	83.459	ENSCPOG00000032671	LSM1	100	83.459	Cavia_porcellus
ENSGMOG00000016651	lsm1	98	83.459	ENSCCAG00000037171	LSM1	100	83.459	Cebus_capucinus
ENSGMOG00000016651	lsm1	98	83.459	ENSCATG00000020377	LSM1	100	83.459	Cercocebus_atys
ENSGMOG00000016651	lsm1	98	81.955	ENSCLAG00000001137	LSM1	100	81.955	Chinchilla_lanigera
ENSGMOG00000016651	lsm1	98	83.459	ENSCSAG00000015485	LSM1	100	83.459	Chlorocebus_sabaeus
ENSGMOG00000016651	lsm1	98	82.707	ENSCHOG00000006030	LSM1	100	82.707	Choloepus_hoffmanni
ENSGMOG00000016651	lsm1	93	77.165	ENSCPBG00000006569	LSM1	86	77.165	Chrysemys_picta_bellii
ENSGMOG00000016651	lsm1	97	62.121	ENSCING00000013536	-	100	61.364	Ciona_intestinalis
ENSGMOG00000016651	lsm1	98	83.459	ENSCANG00000019173	LSM1	100	83.459	Colobus_angolensis_palliatus
ENSGMOG00000016651	lsm1	98	82.707	ENSCGRG00001024560	-	100	82.707	Cricetulus_griseus_chok1gshd
ENSGMOG00000016651	lsm1	78	72.072	ENSCGRG00001002259	-	97	72.072	Cricetulus_griseus_chok1gshd
ENSGMOG00000016651	lsm1	98	82.707	ENSCGRG00000006554	-	100	82.707	Cricetulus_griseus_crigri
ENSGMOG00000016651	lsm1	78	72.072	ENSCGRG00000013603	-	97	72.072	Cricetulus_griseus_crigri
ENSGMOG00000016651	lsm1	100	95.588	ENSCSEG00000010570	lsm1	94	95.588	Cynoglossus_semilaevis
ENSGMOG00000016651	lsm1	99	94.030	ENSCSEG00000008319	lsm1	92	94.030	Cynoglossus_semilaevis
ENSGMOG00000016651	lsm1	98	96.992	ENSCVAG00000003871	lsm1	100	96.992	Cyprinodon_variegatus
ENSGMOG00000016651	lsm1	98	82.707	ENSDARG00000043177	lsm1	100	82.707	Danio_rerio
ENSGMOG00000016651	lsm1	98	82.707	ENSDNOG00000032911	-	100	82.707	Dasypus_novemcinctus
ENSGMOG00000016651	lsm1	98	83.459	ENSDNOG00000046387	-	100	83.459	Dasypus_novemcinctus
ENSGMOG00000016651	lsm1	97	78.788	ENSDNOG00000030989	-	99	78.788	Dasypus_novemcinctus
ENSGMOG00000016651	lsm1	88	64.706	ENSDNOG00000046620	-	100	64.706	Dasypus_novemcinctus
ENSGMOG00000016651	lsm1	98	83.459	ENSDORG00000028172	Lsm1	100	83.459	Dipodomys_ordii
ENSGMOG00000016651	lsm1	91	57.258	FBgn0261067	LSm1	91	57.258	Drosophila_melanogaster
ENSGMOG00000016651	lsm1	98	81.955	ENSEASG00005016677	LSM1	100	81.955	Equus_asinus_asinus
ENSGMOG00000016651	lsm1	98	81.955	ENSECAG00000010461	LSM1	100	81.955	Equus_caballus
ENSGMOG00000016651	lsm1	71	77.083	ENSEEUG00000015181	LSM1	97	77.083	Erinaceus_europaeus
ENSGMOG00000016651	lsm1	98	76.692	ENSELUG00000023374	lsm1	100	76.692	Esox_lucius
ENSGMOG00000016651	lsm1	98	94.737	ENSELUG00000002322	lsm1	100	94.737	Esox_lucius
ENSGMOG00000016651	lsm1	98	83.459	ENSFCAG00000039335	LSM1	100	83.459	Felis_catus
ENSGMOG00000016651	lsm1	87	82.203	ENSFALG00000006723	LSM1	100	82.203	Ficedula_albicollis
ENSGMOG00000016651	lsm1	98	83.459	ENSFDAG00000007658	LSM1	100	83.459	Fukomys_damarensis
ENSGMOG00000016651	lsm1	98	96.992	ENSFHEG00000009556	lsm1	100	96.992	Fundulus_heteroclitus
ENSGMOG00000016651	lsm1	98	81.955	ENSGALG00000003245	LSM1	100	81.955	Gallus_gallus
ENSGMOG00000016651	lsm1	98	96.992	ENSGAFG00000011355	lsm1	100	96.992	Gambusia_affinis
ENSGMOG00000016651	lsm1	100	95.588	ENSGACG00000011763	lsm1	100	95.588	Gasterosteus_aculeatus
ENSGMOG00000016651	lsm1	98	83.459	ENSGAGG00000024065	LSM1	100	83.459	Gopherus_agassizii
ENSGMOG00000016651	lsm1	98	83.459	ENSGGOG00000022658	LSM1	100	83.459	Gorilla_gorilla
ENSGMOG00000016651	lsm1	98	97.744	ENSHBUG00000010897	lsm1	100	97.744	Haplochromis_burtoni
ENSGMOG00000016651	lsm1	98	83.459	ENSHGLG00000005711	LSM1	100	83.459	Heterocephalus_glaber_female
ENSGMOG00000016651	lsm1	98	67.669	ENSHGLG00000017574	-	100	67.669	Heterocephalus_glaber_female
ENSGMOG00000016651	lsm1	98	83.459	ENSHGLG00100017660	LSM1	100	83.459	Heterocephalus_glaber_male
ENSGMOG00000016651	lsm1	98	67.669	ENSHGLG00100012152	-	100	67.669	Heterocephalus_glaber_male
ENSGMOG00000016651	lsm1	98	94.737	ENSHCOG00000017233	lsm1	100	94.737	Hippocampus_comes
ENSGMOG00000016651	lsm1	98	81.955	ENSIPUG00000002312	LSM1	100	81.955	Ictalurus_punctatus
ENSGMOG00000016651	lsm1	57	92.208	ENSSTOG00000026870	LSM1	94	92.208	Ictidomys_tridecemlineatus
ENSGMOG00000016651	lsm1	98	82.707	ENSJJAG00000014605	-	100	82.707	Jaculus_jaculus
ENSGMOG00000016651	lsm1	98	96.992	ENSKMAG00000003016	lsm1	100	96.992	Kryptolebias_marmoratus
ENSGMOG00000016651	lsm1	98	96.241	ENSLBEG00000022352	lsm1	100	96.241	Labrus_bergylta
ENSGMOG00000016651	lsm1	88	80.833	ENSLACG00000010947	LSM1	99	80.833	Latimeria_chalumnae
ENSGMOG00000016651	lsm1	98	85.714	ENSLOCG00000015149	lsm1	100	85.714	Lepisosteus_oculatus
ENSGMOG00000016651	lsm1	98	83.459	ENSLAFG00000003534	LSM1	100	83.459	Loxodonta_africana
ENSGMOG00000016651	lsm1	98	83.459	ENSMFAG00000032661	LSM1	100	83.459	Macaca_fascicularis
ENSGMOG00000016651	lsm1	98	83.459	ENSMLEG00000034535	LSM1	100	83.459	Mandrillus_leucophaeus
ENSGMOG00000016651	lsm1	98	96.241	ENSMAMG00000007464	lsm1	100	96.241	Mastacembelus_armatus
ENSGMOG00000016651	lsm1	98	97.744	ENSMZEG00005010321	lsm1	100	97.744	Maylandia_zebra
ENSGMOG00000016651	lsm1	98	81.955	ENSMGAG00000002125	LSM1	100	81.955	Meleagris_gallopavo
ENSGMOG00000016651	lsm1	98	83.459	ENSMICG00000030726	LSM1	100	83.459	Microcebus_murinus
ENSGMOG00000016651	lsm1	98	82.707	ENSMOCG00000022817	Lsm1	100	82.707	Microtus_ochrogaster
ENSGMOG00000016651	lsm1	98	95.489	ENSMMOG00000015466	lsm1	100	95.489	Mola_mola
ENSGMOG00000016651	lsm1	98	82.707	ENSMODG00000010732	-	100	82.707	Monodelphis_domestica
ENSGMOG00000016651	lsm1	57	97.403	ENSMALG00000001478	lsm1	82	97.403	Monopterus_albus
ENSGMOG00000016651	lsm1	98	83.459	MGP_CAROLIEiJ_G0030930	Lsm1	100	83.459	Mus_caroli
ENSGMOG00000016651	lsm1	98	83.459	ENSMUSG00000037296	Lsm1	100	83.459	Mus_musculus
ENSGMOG00000016651	lsm1	98	83.459	MGP_PahariEiJ_G0021400	Lsm1	100	83.459	Mus_pahari
ENSGMOG00000016651	lsm1	98	83.459	MGP_SPRETEiJ_G0032049	Lsm1	100	83.459	Mus_spretus
ENSGMOG00000016651	lsm1	98	84.211	ENSMPUG00000009883	LSM1	100	84.211	Mustela_putorius_furo
ENSGMOG00000016651	lsm1	98	83.459	ENSMLUG00000003734	LSM1	100	83.459	Myotis_lucifugus
ENSGMOG00000016651	lsm1	98	82.707	ENSNGAG00000003753	Lsm1	100	82.707	Nannospalax_galili
ENSGMOG00000016651	lsm1	57	97.403	ENSNBRG00000017370	lsm1	66	97.403	Neolamprologus_brichardi
ENSGMOG00000016651	lsm1	98	83.459	ENSNLEG00000029390	LSM1	100	83.459	Nomascus_leucogenys
ENSGMOG00000016651	lsm1	98	82.707	ENSMEUG00000014077	LSM1	100	82.707	Notamacropus_eugenii
ENSGMOG00000016651	lsm1	86	78.632	ENSOPRG00000000333	LSM1	100	78.632	Ochotona_princeps
ENSGMOG00000016651	lsm1	98	83.459	ENSODEG00000004834	LSM1	100	83.459	Octodon_degus
ENSGMOG00000016651	lsm1	98	97.744	ENSONIG00000010782	lsm1	100	97.744	Oreochromis_niloticus
ENSGMOG00000016651	lsm1	98	82.707	ENSOANG00000003256	LSM1	100	82.707	Ornithorhynchus_anatinus
ENSGMOG00000016651	lsm1	98	83.459	ENSOCUG00000015399	LSM1	100	83.459	Oryctolagus_cuniculus
ENSGMOG00000016651	lsm1	98	96.241	ENSORLG00000030288	lsm1	100	96.241	Oryzias_latipes
ENSGMOG00000016651	lsm1	98	96.241	ENSORLG00020003941	lsm1	100	96.241	Oryzias_latipes_hni
ENSGMOG00000016651	lsm1	98	94.737	ENSORLG00020006213	-	86	94.737	Oryzias_latipes_hni
ENSGMOG00000016651	lsm1	98	96.241	ENSORLG00015018350	lsm1	100	96.241	Oryzias_latipes_hsok
ENSGMOG00000016651	lsm1	98	96.241	ENSOMEG00000012454	lsm1	100	96.241	Oryzias_melastigma
ENSGMOG00000016651	lsm1	98	83.459	ENSOGAG00000015161	LSM1	100	83.459	Otolemur_garnettii
ENSGMOG00000016651	lsm1	98	83.459	ENSOARG00000001317	LSM1	100	83.459	Ovis_aries
ENSGMOG00000016651	lsm1	98	83.459	ENSPPAG00000032279	LSM1	100	83.459	Pan_paniscus
ENSGMOG00000016651	lsm1	98	83.459	ENSPPRG00000014172	-	100	83.459	Panthera_pardus
ENSGMOG00000016651	lsm1	98	83.459	ENSPTIG00000010289	LSM1	100	83.459	Panthera_tigris_altaica
ENSGMOG00000016651	lsm1	98	83.459	ENSPTRG00000020169	LSM1	100	83.459	Pan_troglodytes
ENSGMOG00000016651	lsm1	98	83.459	ENSPANG00000008814	LSM1	100	83.459	Papio_anubis
ENSGMOG00000016651	lsm1	98	78.947	ENSPKIG00000019409	LSM1	99	78.947	Paramormyrops_kingsleyae
ENSGMOG00000016651	lsm1	98	86.466	ENSPKIG00000001839	lsm1	100	86.466	Paramormyrops_kingsleyae
ENSGMOG00000016651	lsm1	95	78.295	ENSPSIG00000012563	LSM1	98	78.295	Pelodiscus_sinensis
ENSGMOG00000016651	lsm1	57	97.403	ENSPMGG00000022999	lsm1	73	97.403	Periophthalmus_magnuspinnatus
ENSGMOG00000016651	lsm1	83	71.681	ENSPMAG00000002671	lsm1	100	71.681	Petromyzon_marinus
ENSGMOG00000016651	lsm1	98	81.203	ENSPCIG00000008880	LSM1	100	81.203	Phascolarctos_cinereus
ENSGMOG00000016651	lsm1	98	96.992	ENSPFOG00000016029	lsm1	100	96.992	Poecilia_formosa
ENSGMOG00000016651	lsm1	98	96.992	ENSPLAG00000007879	lsm1	100	96.992	Poecilia_latipinna
ENSGMOG00000016651	lsm1	98	96.992	ENSPMEG00000023550	lsm1	100	96.992	Poecilia_mexicana
ENSGMOG00000016651	lsm1	98	96.992	ENSPREG00000009574	lsm1	100	96.992	Poecilia_reticulata
ENSGMOG00000016651	lsm1	98	83.459	ENSPPYG00000018521	LSM1	100	83.459	Pongo_abelii
ENSGMOG00000016651	lsm1	98	83.459	ENSPCOG00000020901	-	100	83.459	Propithecus_coquereli
ENSGMOG00000016651	lsm1	98	83.459	ENSPVAG00000006016	LSM1	100	83.459	Pteropus_vampyrus
ENSGMOG00000016651	lsm1	98	97.744	ENSPNYG00000018067	lsm1	100	97.744	Pundamilia_nyererei
ENSGMOG00000016651	lsm1	98	82.707	ENSPNAG00000013707	lsm1	100	82.707	Pygocentrus_nattereri
ENSGMOG00000016651	lsm1	98	81.955	ENSRNOG00000015375	Lsm1	100	81.955	Rattus_norvegicus
ENSGMOG00000016651	lsm1	98	83.459	ENSRBIG00000027449	LSM1	100	83.459	Rhinopithecus_bieti
ENSGMOG00000016651	lsm1	98	83.459	ENSRROG00000036074	LSM1	100	83.459	Rhinopithecus_roxellana
ENSGMOG00000016651	lsm1	79	45.133	YJL124C	LSM1	66	45.133	Saccharomyces_cerevisiae
ENSGMOG00000016651	lsm1	98	82.707	ENSSHAG00000017260	LSM1	100	82.707	Sarcophilus_harrisii
ENSGMOG00000016651	lsm1	98	85.714	ENSSFOG00015019528	lsm1	100	85.714	Scleropages_formosus
ENSGMOG00000016651	lsm1	98	96.992	ENSSMAG00000004930	lsm1	100	96.992	Scophthalmus_maximus
ENSGMOG00000016651	lsm1	98	95.489	ENSSDUG00000021823	lsm1	100	95.489	Seriola_dumerili
ENSGMOG00000016651	lsm1	98	95.489	ENSSLDG00000012154	lsm1	100	95.489	Seriola_lalandi_dorsalis
ENSGMOG00000016651	lsm1	98	83.459	ENSSPUG00000014878	LSM1	100	83.459	Sphenodon_punctatus
ENSGMOG00000016651	lsm1	98	96.241	ENSSPAG00000020548	lsm1	100	96.241	Stegastes_partitus
ENSGMOG00000016651	lsm1	98	83.459	ENSSSCG00000039058	LSM1	100	83.459	Sus_scrofa
ENSGMOG00000016651	lsm1	98	82.707	ENSTGUG00000004793	LSM1	100	82.707	Taeniopygia_guttata
ENSGMOG00000016651	lsm1	98	93.233	ENSTRUG00000025239	lsm1	100	93.233	Takifugu_rubripes
ENSGMOG00000016651	lsm1	98	91.729	ENSTNIG00000004055	lsm1	100	91.729	Tetraodon_nigroviridis
ENSGMOG00000016651	lsm1	86	80.342	ENSTBEG00000015884	LSM1	100	80.342	Tupaia_belangeri
ENSGMOG00000016651	lsm1	98	83.459	ENSTTRG00000004482	LSM1	100	83.459	Tursiops_truncatus
ENSGMOG00000016651	lsm1	98	83.459	ENSUAMG00000004103	LSM1	100	83.459	Ursus_americanus
ENSGMOG00000016651	lsm1	98	83.459	ENSUMAG00000009132	LSM1	100	83.459	Ursus_maritimus
ENSGMOG00000016651	lsm1	57	90.909	ENSVPAG00000011593	LSM1	100	90.909	Vicugna_pacos
ENSGMOG00000016651	lsm1	98	83.459	ENSVVUG00000020191	LSM1	100	83.459	Vulpes_vulpes
ENSGMOG00000016651	lsm1	65	58.065	ENSVVUG00000014880	-	99	58.065	Vulpes_vulpes
ENSGMOG00000016651	lsm1	98	78.102	ENSXETG00000009004	lsm1	100	78.102	Xenopus_tropicalis
ENSGMOG00000016651	lsm1	98	95.489	ENSXCOG00000015631	lsm1	100	95.489	Xiphophorus_couchianus
ENSGMOG00000016651	lsm1	98	95.489	ENSXMAG00000026637	lsm1	100	95.489	Xiphophorus_maculatus