EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000016729 (Gene tree)
Gene ID: -
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 25829 bases
Position: chrGeneScaffold_413:157218-183046
Accession: ZDB-GENE-041010-146
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000017962	CMS1	PF14617.6	8.8e-35	1	1
ENSGMOP00000017962	DEAD	PF00270.29	3.6e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000018403	-	840	-	ENSGMOP00000017962	279 (aa)	-	UPI00023F3BBA

Gene Model

Click here to download ENSGMOG00000016729's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000016729's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000016729	cmss1	100	52.098	ENSG00000184220	CMSS1	98	66.250	Homo_sapiens
ENSGMOG00000016729	cmss1	73	80.296	ENSAPOG00000010604	cmss1	97	70.980	Acanthochromis_polyacanthus
ENSGMOG00000016729	cmss1	72	62.069	ENSAMEG00000004092	CMSS1	78	62.069	Ailuropoda_melanoleuca
ENSGMOG00000016729	cmss1	90	61.390	ENSACIG00000021854	cmss1	98	62.934	Amphilophus_citrinellus
ENSGMOG00000016729	cmss1	100	64.336	ENSAOCG00000013361	cmss1	99	68.881	Amphiprion_ocellaris
ENSGMOG00000016729	cmss1	100	68.641	ENSAPEG00000005829	cmss1	99	70.035	Amphiprion_percula
ENSGMOG00000016729	cmss1	100	64.808	ENSATEG00000008209	cmss1	99	65.854	Anabas_testudineus
ENSGMOG00000016729	cmss1	72	60.891	ENSAPLG00000010542	CMSS1	95	58.744	Anas_platyrhynchos
ENSGMOG00000016729	cmss1	72	61.386	ENSACAG00000011065	CMSS1	74	61.386	Anolis_carolinensis
ENSGMOG00000016729	cmss1	100	49.826	ENSANAG00000023565	CMSS1	99	49.648	Aotus_nancymaae
ENSGMOG00000016729	cmss1	100	67.708	ENSACLG00000027294	cmss1	99	68.403	Astatotilapia_calliptera
ENSGMOG00000016729	cmss1	100	56.997	ENSAMXG00000002046	cmss1	99	59.107	Astyanax_mexicanus
ENSGMOG00000016729	cmss1	100	53.025	ENSBTAG00000013663	CMSS1	99	50.853	Bos_taurus
ENSGMOG00000016729	cmss1	100	52.113	ENSCJAG00000000610	CMSS1	99	51.761	Callithrix_jacchus
ENSGMOG00000016729	cmss1	72	62.376	ENSCAFG00000009230	CMSS1	73	62.376	Canis_familiaris
ENSGMOG00000016729	cmss1	72	62.376	ENSCAFG00020009464	-	74	62.376	Canis_lupus_dingo
ENSGMOG00000016729	cmss1	72	61.386	ENSCAFG00020024156	-	63	61.386	Canis_lupus_dingo
ENSGMOG00000016729	cmss1	72	61.386	ENSCHIG00000013003	CMSS1	73	61.386	Capra_hircus
ENSGMOG00000016729	cmss1	72	61.386	ENSTSYG00000009266	CMSS1	78	61.386	Carlito_syrichta
ENSGMOG00000016729	cmss1	75	53.333	ENSCAPG00000013584	CMSS1	87	55.914	Cavia_aperea
ENSGMOG00000016729	cmss1	100	52.297	ENSCPOG00000014680	CMSS1	99	51.590	Cavia_porcellus
ENSGMOG00000016729	cmss1	100	51.568	ENSCCAG00000034685	CMSS1	99	51.056	Cebus_capucinus
ENSGMOG00000016729	cmss1	100	52.083	ENSCATG00000031980	CMSS1	99	49.831	Cercocebus_atys
ENSGMOG00000016729	cmss1	72	62.000	ENSCLAG00000011241	CMSS1	94	61.009	Chinchilla_lanigera
ENSGMOG00000016729	cmss1	72	61.881	ENSCSAG00000006024	CMSS1	82	61.881	Chlorocebus_sabaeus
ENSGMOG00000016729	cmss1	100	40.569	ENSCHOG00000012098	CMSS1	99	39.858	Choloepus_hoffmanni
ENSGMOG00000016729	cmss1	69	40.000	ENSCING00000014848	-	96	43.333	Ciona_intestinalis
ENSGMOG00000016729	cmss1	100	52.313	ENSCANG00000031337	CMSS1	77	61.881	Colobus_angolensis_palliatus
ENSGMOG00000016729	cmss1	100	50.883	ENSCGRG00001014305	Cmss1	99	50.177	Cricetulus_griseus_chok1gshd
ENSGMOG00000016729	cmss1	72	60.396	ENSCGRG00000006722	Cmss1	79	60.396	Cricetulus_griseus_crigri
ENSGMOG00000016729	cmss1	100	65.636	ENSCSEG00000004958	cmss1	99	67.123	Cynoglossus_semilaevis
ENSGMOG00000016729	cmss1	100	62.976	ENSCVAG00000005039	cmss1	99	62.457	Cyprinodon_variegatus
ENSGMOG00000016729	cmss1	100	59.247	ENSDARG00000112579	cmss1	99	59.932	Danio_rerio
ENSGMOG00000016729	cmss1	96	53.184	ENSDNOG00000040418	CMSS1	73	61.386	Dasypus_novemcinctus
ENSGMOG00000016729	cmss1	100	53.521	ENSDORG00000010461	Cmss1	99	51.864	Dipodomys_ordii
ENSGMOG00000016729	cmss1	72	61.000	ENSEASG00005010966	CMSS1	100	59.375	Equus_asinus_asinus
ENSGMOG00000016729	cmss1	72	60.000	ENSECAG00000015662	CMSS1	89	60.396	Equus_caballus
ENSGMOG00000016729	cmss1	72	40.000	ENSEEUG00000007624	-	73	40.594	Erinaceus_europaeus
ENSGMOG00000016729	cmss1	73	73.399	ENSELUG00000019459	cmss1	99	58.923	Esox_lucius
ENSGMOG00000016729	cmss1	100	55.160	ENSFCAG00000044577	CMSS1	99	52.234	Felis_catus
ENSGMOG00000016729	cmss1	72	59.406	ENSFALG00000005816	CMSS1	85	59.406	Ficedula_albicollis
ENSGMOG00000016729	cmss1	72	61.386	ENSFDAG00000012577	CMSS1	89	61.386	Fukomys_damarensis
ENSGMOG00000016729	cmss1	80	69.778	ENSFHEG00000012008	cmss1	93	69.778	Fundulus_heteroclitus
ENSGMOG00000016729	cmss1	72	61.881	ENSGALG00000015267	CMSS1	77	61.881	Gallus_gallus
ENSGMOG00000016729	cmss1	93	65.543	ENSGAFG00000021217	cmss1	77	75.369	Gambusia_affinis
ENSGMOG00000016729	cmss1	100	64.516	ENSGACG00000002798	cmss1	100	64.516	Gasterosteus_aculeatus
ENSGMOG00000016729	cmss1	94	54.167	ENSGAGG00000019861	CMSS1	79	61.881	Gopherus_agassizii
ENSGMOG00000016729	cmss1	72	61.386	ENSGGOG00000014125	CMSS1	77	61.386	Gorilla_gorilla
ENSGMOG00000016729	cmss1	100	67.247	ENSHBUG00000008431	cmss1	99	66.551	Haplochromis_burtoni
ENSGMOG00000016729	cmss1	72	62.000	ENSHGLG00000019481	CMSS1	82	62.376	Heterocephalus_glaber_female
ENSGMOG00000016729	cmss1	72	62.000	ENSHGLG00100010314	CMSS1	81	62.376	Heterocephalus_glaber_male
ENSGMOG00000016729	cmss1	100	64.384	ENSHCOG00000003222	cmss1	99	65.068	Hippocampus_comes
ENSGMOG00000016729	cmss1	100	60.900	ENSIPUG00000011591	cmss1	99	59.932	Ictalurus_punctatus
ENSGMOG00000016729	cmss1	100	53.571	ENSSTOG00000019366	CMSS1	99	51.773	Ictidomys_tridecemlineatus
ENSGMOG00000016729	cmss1	100	52.448	ENSJJAG00000014894	Cmss1	90	61.881	Jaculus_jaculus
ENSGMOG00000016729	cmss1	82	63.043	ENSKMAG00000002390	cmss1	97	59.289	Kryptolebias_marmoratus
ENSGMOG00000016729	cmss1	73	71.569	ENSLBEG00000006298	cmss1	83	71.569	Labrus_bergylta
ENSGMOG00000016729	cmss1	72	63.366	ENSLACG00000009293	CMSS1	88	63.366	Latimeria_chalumnae
ENSGMOG00000016729	cmss1	100	51.579	ENSLOCG00000009391	cmss1	99	51.748	Lepisosteus_oculatus
ENSGMOG00000016729	cmss1	72	61.500	ENSLAFG00000017509	CMSS1	89	61.881	Loxodonta_africana
ENSGMOG00000016729	cmss1	100	52.083	ENSMFAG00000045006	CMSS1	99	49.492	Macaca_fascicularis
ENSGMOG00000016729	cmss1	100	51.736	ENSMMUG00000002939	CMSS1	99	49.153	Macaca_mulatta
ENSGMOG00000016729	cmss1	100	52.083	ENSMNEG00000031315	CMSS1	99	49.492	Macaca_nemestrina
ENSGMOG00000016729	cmss1	100	52.083	ENSMLEG00000033660	CMSS1	99	49.492	Mandrillus_leucophaeus
ENSGMOG00000016729	cmss1	100	69.338	ENSMAMG00000017176	cmss1	99	70.035	Mastacembelus_armatus
ENSGMOG00000016729	cmss1	100	67.708	ENSMZEG00005021886	cmss1	99	68.403	Maylandia_zebra
ENSGMOG00000016729	cmss1	72	61.881	ENSMGAG00000014360	CMSS1	89	61.881	Meleagris_gallopavo
ENSGMOG00000016729	cmss1	100	37.234	ENSMAUG00000020609	Cmss1	99	36.525	Mesocricetus_auratus
ENSGMOG00000016729	cmss1	100	52.632	ENSMICG00000048977	CMSS1	99	52.482	Microcebus_murinus
ENSGMOG00000016729	cmss1	100	51.773	ENSMOCG00000021937	Cmss1	99	50.709	Microtus_ochrogaster
ENSGMOG00000016729	cmss1	88	66.667	ENSMMOG00000019794	cmss1	96	66.667	Mola_mola
ENSGMOG00000016729	cmss1	72	59.901	ENSMODG00000002275	CMSS1	76	59.901	Monodelphis_domestica
ENSGMOG00000016729	cmss1	100	69.097	ENSMALG00000004250	cmss1	99	67.918	Monopterus_albus
ENSGMOG00000016729	cmss1	100	53.004	MGP_CAROLIEiJ_G0020824	Cmss1	99	53.191	Mus_caroli
ENSGMOG00000016729	cmss1	100	52.297	ENSMUSG00000022748	Cmss1	99	52.482	Mus_musculus
ENSGMOG00000016729	cmss1	100	52.482	MGP_PahariEiJ_G0016524	Cmss1	99	50.896	Mus_pahari
ENSGMOG00000016729	cmss1	100	51.773	MGP_SPRETEiJ_G0021724	Cmss1	99	52.128	Mus_spretus
ENSGMOG00000016729	cmss1	71	61.809	ENSMPUG00000011324	CMSS1	78	62.189	Mustela_putorius_furo
ENSGMOG00000016729	cmss1	72	62.376	ENSMLUG00000001131	CMSS1	78	62.745	Myotis_lucifugus
ENSGMOG00000016729	cmss1	100	52.669	ENSNGAG00000020316	Cmss1	99	52.817	Nannospalax_galili
ENSGMOG00000016729	cmss1	100	66.667	ENSNBRG00000003095	cmss1	99	68.750	Neolamprologus_brichardi
ENSGMOG00000016729	cmss1	100	52.778	ENSNLEG00000034172	CMSS1	99	51.203	Nomascus_leucogenys
ENSGMOG00000016729	cmss1	77	52.315	ENSMEUG00000014505	CMSS1	96	51.835	Notamacropus_eugenii
ENSGMOG00000016729	cmss1	100	52.982	ENSOPRG00000002986	CMSS1	99	50.350	Ochotona_princeps
ENSGMOG00000016729	cmss1	100	43.728	ENSODEG00000009446	-	78	50.990	Octodon_degus
ENSGMOG00000016729	cmss1	100	50.179	ENSODEG00000003558	-	75	59.406	Octodon_degus
ENSGMOG00000016729	cmss1	100	52.098	ENSODEG00000005226	-	99	48.814	Octodon_degus
ENSGMOG00000016729	cmss1	100	45.775	ENSODEG00000001853	-	99	45.196	Octodon_degus
ENSGMOG00000016729	cmss1	90	69.112	ENSONIG00000006678	cmss1	99	69.498	Oreochromis_niloticus
ENSGMOG00000016729	cmss1	96	52.747	ENSOANG00000007529	CMSS1	87	60.891	Ornithorhynchus_anatinus
ENSGMOG00000016729	cmss1	72	61.881	ENSOCUG00000025366	CMSS1	73	61.881	Oryctolagus_cuniculus
ENSGMOG00000016729	cmss1	100	64.561	ENSORLG00000020340	cmss1	99	63.636	Oryzias_latipes
ENSGMOG00000016729	cmss1	82	61.135	ENSORLG00020012235	cmss1	93	61.607	Oryzias_latipes_hni
ENSGMOG00000016729	cmss1	94	55.056	ENSORLG00015015551	cmss1	76	64.532	Oryzias_latipes_hsok
ENSGMOG00000016729	cmss1	100	60.976	ENSOMEG00000012555	cmss1	99	64.336	Oryzias_melastigma
ENSGMOG00000016729	cmss1	72	62.376	ENSOGAG00000002045	CMSS1	89	62.376	Otolemur_garnettii
ENSGMOG00000016729	cmss1	72	61.084	ENSOARG00000017899	CMSS1	70	61.084	Ovis_aries
ENSGMOG00000016729	cmss1	72	61.386	ENSPPAG00000038515	CMSS1	74	61.386	Pan_paniscus
ENSGMOG00000016729	cmss1	100	53.901	ENSPPRG00000016767	CMSS1	99	52.465	Panthera_pardus
ENSGMOG00000016729	cmss1	100	53.846	ENSPTIG00000018274	CMSS1	99	51.546	Panthera_tigris_altaica
ENSGMOG00000016729	cmss1	100	52.448	ENSPTRG00000015157	CMSS1	99	50.515	Pan_troglodytes
ENSGMOG00000016729	cmss1	72	61.881	ENSPANG00000019980	CMSS1	80	61.881	Papio_anubis
ENSGMOG00000016729	cmss1	97	60.949	ENSPKIG00000012609	cmss1	92	66.800	Paramormyrops_kingsleyae
ENSGMOG00000016729	cmss1	72	64.356	ENSPSIG00000003849	CMSS1	88	64.356	Pelodiscus_sinensis
ENSGMOG00000016729	cmss1	73	74.510	ENSPMGG00000010286	cmss1	88	74.510	Periophthalmus_magnuspinnatus
ENSGMOG00000016729	cmss1	100	52.265	ENSPEMG00000016384	Cmss1	99	48.986	Peromyscus_maniculatus_bairdii
ENSGMOG00000016729	cmss1	73	51.961	ENSPMAG00000001146	cmss1	99	52.217	Petromyzon_marinus
ENSGMOG00000016729	cmss1	96	53.818	ENSPCIG00000015656	CMSS1	83	61.009	Phascolarctos_cinereus
ENSGMOG00000016729	cmss1	100	63.889	ENSPFOG00000016849	cmss1	99	65.278	Poecilia_formosa
ENSGMOG00000016729	cmss1	100	63.542	ENSPLAG00000008323	cmss1	99	64.931	Poecilia_latipinna
ENSGMOG00000016729	cmss1	100	65.625	ENSPMEG00000021020	cmss1	99	65.972	Poecilia_mexicana
ENSGMOG00000016729	cmss1	90	68.077	ENSPREG00000007618	cmss1	88	68.077	Poecilia_reticulata
ENSGMOG00000016729	cmss1	100	52.083	ENSPPYG00000013606	CMSS1	99	50.515	Pongo_abelii
ENSGMOG00000016729	cmss1	100	52.857	ENSPCOG00000020035	CMSS1	99	52.857	Propithecus_coquereli
ENSGMOG00000016729	cmss1	100	45.423	ENSPVAG00000017031	CMSS1	99	44.718	Pteropus_vampyrus
ENSGMOG00000016729	cmss1	91	68.321	ENSPNYG00000013428	cmss1	96	69.084	Pundamilia_nyererei
ENSGMOG00000016729	cmss1	100	59.107	ENSPNAG00000007912	cmss1	99	57.432	Pygocentrus_nattereri
ENSGMOG00000016729	cmss1	72	62.376	ENSRNOG00000027888	Cmss1	79	62.376	Rattus_norvegicus
ENSGMOG00000016729	cmss1	100	52.098	ENSRBIG00000037931	CMSS1	99	49.492	Rhinopithecus_bieti
ENSGMOG00000016729	cmss1	100	52.098	ENSRROG00000042910	CMSS1	99	49.492	Rhinopithecus_roxellana
ENSGMOG00000016729	cmss1	72	60.891	ENSSBOG00000030980	CMSS1	77	60.891	Saimiri_boliviensis_boliviensis
ENSGMOG00000016729	cmss1	72	62.376	ENSSHAG00000009321	CMSS1	80	62.376	Sarcophilus_harrisii
ENSGMOG00000016729	cmss1	100	62.369	ENSSFOG00015001509	cmss1	99	62.369	Scleropages_formosus
ENSGMOG00000016729	cmss1	100	67.361	ENSSMAG00000001653	cmss1	99	66.327	Scophthalmus_maximus
ENSGMOG00000016729	cmss1	100	67.708	ENSSDUG00000007719	cmss1	99	67.483	Seriola_dumerili
ENSGMOG00000016729	cmss1	88	67.050	ENSSLDG00000012300	cmss1	99	63.025	Seriola_lalandi_dorsalis
ENSGMOG00000016729	cmss1	100	45.296	ENSSARG00000003584	CMSS1	99	44.251	Sorex_araneus
ENSGMOG00000016729	cmss1	80	60.360	ENSSPUG00000003865	CMSS1	98	60.360	Sphenodon_punctatus
ENSGMOG00000016729	cmss1	95	67.669	ENSSPAG00000019182	cmss1	77	69.721	Stegastes_partitus
ENSGMOG00000016729	cmss1	100	52.113	ENSSSCG00000011970	CMSS1	99	49.831	Sus_scrofa
ENSGMOG00000016729	cmss1	72	59.406	ENSTGUG00000013635	CMSS1	88	59.406	Taeniopygia_guttata
ENSGMOG00000016729	cmss1	100	63.636	ENSTRUG00000015265	cmss1	99	61.649	Takifugu_rubripes
ENSGMOG00000016729	cmss1	73	68.473	ENSTNIG00000002880	cmss1	74	68.473	Tetraodon_nigroviridis
ENSGMOG00000016729	cmss1	72	43.564	ENSTBEG00000016722	CMSS1	72	43.564	Tupaia_belangeri
ENSGMOG00000016729	cmss1	100	50.352	ENSTTRG00000001562	CMSS1	99	50.000	Tursiops_truncatus
ENSGMOG00000016729	cmss1	72	62.871	ENSUAMG00000024209	CMSS1	91	62.871	Ursus_americanus
ENSGMOG00000016729	cmss1	72	61.881	ENSUMAG00000001983	CMSS1	78	61.881	Ursus_maritimus
ENSGMOG00000016729	cmss1	57	60.000	ENSVPAG00000000263	CMSS1	57	60.000	Vicugna_pacos
ENSGMOG00000016729	cmss1	72	62.000	ENSVVUG00000021647	-	82	62.376	Vulpes_vulpes
ENSGMOG00000016729	cmss1	89	55.645	ENSVVUG00000007776	-	95	56.452	Vulpes_vulpes
ENSGMOG00000016729	cmss1	100	53.405	ENSXETG00000011858	cmss1	99	53.405	Xenopus_tropicalis
ENSGMOG00000016729	cmss1	96	63.309	ENSXCOG00000018724	cmss1	70	74.384	Xiphophorus_couchianus
ENSGMOG00000016729	cmss1	92	64.552	ENSXMAG00000011243	cmss1	76	74.384	Xiphophorus_maculatus