EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000017279 (Gene tree)
Gene ID: -
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival of motor neuron 1%2C telomeric
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 2780 bases
Position: chrGeneScaffold_2119:293902-296681
Accession: ZDB-GENE-990715-16
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000018574	TUDOR	PF00567.24	8.1e-07	1	1
ENSGMOP00000018574	SMN	PF06003.12	3.9e-103	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000019030	-	831	-	ENSGMOP00000018574	276 (aa)	-	UPI00023F3B91

Gene Model

Click here to download ENSGMOG00000017279's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000017279's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000017279	smn1	93	48.897	ENSG00000205571	SMN2	96	48.708	Homo_sapiens
ENSGMOG00000017279	smn1	93	48.897	ENSG00000172062	SMN1	96	48.708	Homo_sapiens
ENSGMOG00000017279	smn1	98	65.018	ENSAPOG00000011324	smn1	100	67.138	Acanthochromis_polyacanthus
ENSGMOG00000017279	smn1	93	48.014	ENSAMEG00000003316	-	92	50.542	Ailuropoda_melanoleuca
ENSGMOG00000017279	smn1	91	63.118	ENSACIG00000019772	-	99	63.118	Amphilophus_citrinellus
ENSGMOG00000017279	smn1	61	70.659	ENSACIG00000007598	smn1	88	73.125	Amphilophus_citrinellus
ENSGMOG00000017279	smn1	98	65.724	ENSAOCG00000024444	smn1	100	67.491	Amphiprion_ocellaris
ENSGMOG00000017279	smn1	98	65.724	ENSAPEG00000016504	smn1	100	67.491	Amphiprion_percula
ENSGMOG00000017279	smn1	93	65.926	ENSATEG00000002182	smn1	82	65.926	Anabas_testudineus
ENSGMOG00000017279	smn1	68	44.335	ENSAPLG00000010912	-	99	44.000	Anas_platyrhynchos
ENSGMOG00000017279	smn1	96	50.362	ENSACAG00000010017	-	93	53.008	Anolis_carolinensis
ENSGMOG00000017279	smn1	96	45.907	ENSANAG00000032133	-	96	46.479	Aotus_nancymaae
ENSGMOG00000017279	smn1	92	67.170	ENSACLG00000007308	smn1	92	66.667	Astatotilapia_calliptera
ENSGMOG00000017279	smn1	98	55.714	ENSAMXG00000013884	smn1	100	58.214	Astyanax_mexicanus
ENSGMOG00000017279	smn1	92	47.955	ENSBTAG00000005743	SMN2	96	50.903	Bos_taurus
ENSGMOG00000017279	smn1	93	47.674	ENSCJAG00000016290	-	95	47.143	Callithrix_jacchus
ENSGMOG00000017279	smn1	92	49.091	ENSCAFG00000007812	SMN	96	49.819	Canis_familiaris
ENSGMOG00000017279	smn1	92	49.091	ENSCAFG00020019229	-	89	49.819	Canis_lupus_dingo
ENSGMOG00000017279	smn1	92	47.601	ENSCHIG00000015559	-	95	50.357	Capra_hircus
ENSGMOG00000017279	smn1	95	47.636	ENSTSYG00000012058	-	94	52.439	Carlito_syrichta
ENSGMOG00000017279	smn1	95	43.007	ENSCPOG00000012328	-	96	47.099	Cavia_porcellus
ENSGMOG00000017279	smn1	95	42.553	ENSCPOG00000036973	-	95	46.853	Cavia_porcellus
ENSGMOG00000017279	smn1	93	47.970	ENSCCAG00000018127	-	95	46.763	Cebus_capucinus
ENSGMOG00000017279	smn1	93	48.897	ENSCATG00000037002	-	97	48.718	Cercocebus_atys
ENSGMOG00000017279	smn1	95	48.175	ENSCLAG00000000284	-	95	51.429	Chinchilla_lanigera
ENSGMOG00000017279	smn1	93	50.000	ENSCSAG00000015688	-	95	49.462	Chlorocebus_sabaeus
ENSGMOG00000017279	smn1	70	73.333	ENSCHOG00000007346	-	71	90.476	Choloepus_hoffmanni
ENSGMOG00000017279	smn1	93	50.376	ENSCPBG00000010968	-	97	46.617	Chrysemys_picta_bellii
ENSGMOG00000017279	smn1	93	48.519	ENSCANG00000038242	-	97	49.442	Colobus_angolensis_palliatus
ENSGMOG00000017279	smn1	96	42.751	ENSCANG00000033324	-	93	45.788	Colobus_angolensis_palliatus
ENSGMOG00000017279	smn1	96	45.290	ENSCGRG00001017959	-	96	46.763	Cricetulus_griseus_chok1gshd
ENSGMOG00000017279	smn1	95	37.175	ENSCGRG00001016998	-	95	37.546	Cricetulus_griseus_chok1gshd
ENSGMOG00000017279	smn1	96	45.290	ENSCGRG00000007698	Smn1	96	46.763	Cricetulus_griseus_crigri
ENSGMOG00000017279	smn1	95	59.155	ENSCSEG00000015227	smn1	99	57.244	Cynoglossus_semilaevis
ENSGMOG00000017279	smn1	98	63.732	ENSCVAG00000007498	smn1	100	62.937	Cyprinodon_variegatus
ENSGMOG00000017279	smn1	98	60.854	ENSDARG00000018494	smn1	100	60.142	Danio_rerio
ENSGMOG00000017279	smn1	73	46.047	ENSDNOG00000007283	-	89	49.065	Dasypus_novemcinctus
ENSGMOG00000017279	smn1	84	40.773	ENSDNOG00000045949	-	76	43.820	Dasypus_novemcinctus
ENSGMOG00000017279	smn1	91	40.840	ENSDORG00000007082	Smn1	94	44.151	Dipodomys_ordii
ENSGMOG00000017279	smn1	63	42.391	ENSETEG00000001406	-	84	42.391	Echinops_telfairi
ENSGMOG00000017279	smn1	94	38.516	ENSEBUG00000011902	smn1	96	36.170	Eptatretus_burgeri
ENSGMOG00000017279	smn1	86	46.850	ENSEASG00005018000	-	89	46.850	Equus_asinus_asinus
ENSGMOG00000017279	smn1	93	49.451	ENSECAG00000015215	-	96	49.104	Equus_caballus
ENSGMOG00000017279	smn1	86	45.669	ENSEEUG00000015777	-	100	43.561	Erinaceus_europaeus
ENSGMOG00000017279	smn1	98	64.875	ENSELUG00000018067	smn1	100	63.309	Esox_lucius
ENSGMOG00000017279	smn1	95	47.670	ENSFCAG00000028292	SMN	96	50.538	Felis_catus
ENSGMOG00000017279	smn1	92	53.788	ENSFALG00000012320	-	95	49.237	Ficedula_albicollis
ENSGMOG00000017279	smn1	95	43.463	ENSFDAG00000017683	-	95	49.117	Fukomys_damarensis
ENSGMOG00000017279	smn1	95	63.043	ENSFHEG00000018508	smn1	100	62.681	Fundulus_heteroclitus
ENSGMOG00000017279	smn1	97	49.097	ENSGALG00000002430	SMN	97	50.558	Gallus_gallus
ENSGMOG00000017279	smn1	98	63.958	ENSGAFG00000009501	smn1	100	62.456	Gambusia_affinis
ENSGMOG00000017279	smn1	98	70.438	ENSGACG00000010584	smn1	99	69.784	Gasterosteus_aculeatus
ENSGMOG00000017279	smn1	94	50.000	ENSGAGG00000011374	-	95	50.752	Gopherus_agassizii
ENSGMOG00000017279	smn1	50	40.449	ENSGAGG00000013639	-	98	33.898	Gopherus_agassizii
ENSGMOG00000017279	smn1	90	43.373	ENSGGOG00000003872	-	97	41.697	Gorilla_gorilla
ENSGMOG00000017279	smn1	57	51.852	ENSGGOG00000026704	-	79	50.888	Gorilla_gorilla
ENSGMOG00000017279	smn1	98	66.071	ENSHBUG00000013987	smn1	100	66.429	Haplochromis_burtoni
ENSGMOG00000017279	smn1	95	47.842	ENSHGLG00000001905	-	97	47.842	Heterocephalus_glaber_female
ENSGMOG00000017279	smn1	95	45.161	ENSHGLG00000001018	-	95	49.104	Heterocephalus_glaber_female
ENSGMOG00000017279	smn1	95	45.161	ENSHGLG00100011252	-	95	49.104	Heterocephalus_glaber_male
ENSGMOG00000017279	smn1	93	47.253	ENSHGLG00100018676	-	99	47.253	Heterocephalus_glaber_male
ENSGMOG00000017279	smn1	91	65.779	ENSHCOG00000017136	smn1	89	63.498	Hippocampus_comes
ENSGMOG00000017279	smn1	98	58.865	ENSIPUG00000012580	smn1	89	56.690	Ictalurus_punctatus
ENSGMOG00000017279	smn1	90	46.442	ENSSTOG00000012288	-	96	48.699	Ictidomys_tridecemlineatus
ENSGMOG00000017279	smn1	51	44.755	ENSJJAG00000014853	-	93	41.899	Jaculus_jaculus
ENSGMOG00000017279	smn1	98	62.937	ENSKMAG00000007239	smn1	100	64.184	Kryptolebias_marmoratus
ENSGMOG00000017279	smn1	98	64.085	ENSLBEG00000022550	smn1	100	66.197	Labrus_bergylta
ENSGMOG00000017279	smn1	97	34.448	ENSLACG00000009808	-	95	33.793	Latimeria_chalumnae
ENSGMOG00000017279	smn1	98	52.297	ENSLOCG00000011339	smn1	100	54.804	Lepisosteus_oculatus
ENSGMOG00000017279	smn1	95	46.454	ENSLAFG00000003425	-	92	49.110	Loxodonta_africana
ENSGMOG00000017279	smn1	93	44.485	ENSMFAG00000008812	-	95	46.595	Macaca_fascicularis
ENSGMOG00000017279	smn1	93	50.000	ENSMFAG00000031523	SMN1	97	49.451	Macaca_fascicularis
ENSGMOG00000017279	smn1	93	44.891	ENSMMUG00000030594	-	95	46.975	Macaca_mulatta
ENSGMOG00000017279	smn1	93	50.000	ENSMMUG00000020214	SMN1	97	49.451	Macaca_mulatta
ENSGMOG00000017279	smn1	93	50.000	ENSMNEG00000035094	-	97	49.451	Macaca_nemestrina
ENSGMOG00000017279	smn1	58	40.909	ENSMNEG00000036423	-	85	40.367	Macaca_nemestrina
ENSGMOG00000017279	smn1	93	50.185	ENSMLEG00000041902	-	96	50.186	Mandrillus_leucophaeus
ENSGMOG00000017279	smn1	98	64.789	ENSMAMG00000011034	smn1	100	63.380	Mastacembelus_armatus
ENSGMOG00000017279	smn1	98	66.429	ENSMZEG00005013634	smn1	100	66.786	Maylandia_zebra
ENSGMOG00000017279	smn1	69	45.274	ENSMGAG00000008889	-	95	50.802	Meleagris_gallopavo
ENSGMOG00000017279	smn1	96	42.754	ENSMAUG00000010262	Smn1	96	46.403	Mesocricetus_auratus
ENSGMOG00000017279	smn1	63	48.571	ENSMICG00000034708	-	75	50.595	Microcebus_murinus
ENSGMOG00000017279	smn1	96	46.377	ENSMOCG00000017833	Smn1	96	47.826	Microtus_ochrogaster
ENSGMOG00000017279	smn1	93	61.776	ENSMMOG00000005504	smn1	67	70.950	Mola_mola
ENSGMOG00000017279	smn1	95	54.945	ENSMODG00000001436	-	95	52.174	Monodelphis_domestica
ENSGMOG00000017279	smn1	98	65.493	ENSMALG00000008025	smn1	100	65.141	Monopterus_albus
ENSGMOG00000017279	smn1	96	48.029	MGP_CAROLIEiJ_G0018836	Smn1	96	47.038	Mus_caroli
ENSGMOG00000017279	smn1	96	48.029	ENSMUSG00000021645	Smn1	96	47.038	Mus_musculus
ENSGMOG00000017279	smn1	96	44.043	MGP_PahariEiJ_G0015911	Smn1	96	47.670	Mus_pahari
ENSGMOG00000017279	smn1	96	48.387	MGP_SPRETEiJ_G0019718	Smn1	96	47.038	Mus_spretus
ENSGMOG00000017279	smn1	93	46.953	ENSMPUG00000014470	-	97	49.451	Mustela_putorius_furo
ENSGMOG00000017279	smn1	94	47.222	ENSMLUG00000010603	-	92	48.070	Myotis_lucifugus
ENSGMOG00000017279	smn1	99	42.414	ENSNGAG00000019833	Smn1	98	46.503	Nannospalax_galili
ENSGMOG00000017279	smn1	98	66.078	ENSNBRG00000023000	smn1	100	65.724	Neolamprologus_brichardi
ENSGMOG00000017279	smn1	95	48.921	ENSNLEG00000004454	-	96	49.259	Nomascus_leucogenys
ENSGMOG00000017279	smn1	64	54.839	ENSMEUG00000011393	-	92	47.826	Notamacropus_eugenii
ENSGMOG00000017279	smn1	86	44.269	ENSOPRG00000002015	-	100	47.328	Ochotona_princeps
ENSGMOG00000017279	smn1	92	45.848	ENSODEG00000015976	-	95	49.259	Octodon_degus
ENSGMOG00000017279	smn1	98	66.431	ENSONIG00000011799	smn1	100	66.078	Oreochromis_niloticus
ENSGMOG00000017279	smn1	92	48.485	ENSOANG00000001626	-	95	44.928	Ornithorhynchus_anatinus
ENSGMOG00000017279	smn1	66	40.887	ENSOCUG00000025183	-	95	41.135	Oryctolagus_cuniculus
ENSGMOG00000017279	smn1	95	48.175	ENSOCUG00000026649	-	95	48.175	Oryctolagus_cuniculus
ENSGMOG00000017279	smn1	95	47.955	ENSOCUG00000017097	-	95	47.955	Oryctolagus_cuniculus
ENSGMOG00000017279	smn1	98	56.537	ENSORLG00000010552	smn1	100	62.456	Oryzias_latipes
ENSGMOG00000017279	smn1	98	61.765	ENSORLG00020007936	smn1	100	60.294	Oryzias_latipes_hni
ENSGMOG00000017279	smn1	98	57.244	ENSORLG00015022425	smn1	100	62.105	Oryzias_latipes_hsok
ENSGMOG00000017279	smn1	98	57.951	ENSOMEG00000007824	smn1	100	65.724	Oryzias_melastigma
ENSGMOG00000017279	smn1	90	42.537	ENSOGAG00000031414	-	96	45.290	Otolemur_garnettii
ENSGMOG00000017279	smn1	92	47.566	ENSOARG00000005425	-	97	51.311	Ovis_aries
ENSGMOG00000017279	smn1	93	48.897	ENSPPAG00000036640	-	96	48.708	Pan_paniscus
ENSGMOG00000017279	smn1	95	47.670	ENSPPRG00000005575	-	96	50.538	Panthera_pardus
ENSGMOG00000017279	smn1	95	49.286	ENSPTIG00000007745	-	96	50.357	Panthera_tigris_altaica
ENSGMOG00000017279	smn1	93	46.545	ENSPTRG00000016955	-	96	48.364	Pan_troglodytes
ENSGMOG00000017279	smn1	95	42.446	ENSPANG00000000253	-	95	47.143	Papio_anubis
ENSGMOG00000017279	smn1	95	49.640	ENSPANG00000013601	-	95	50.360	Papio_anubis
ENSGMOG00000017279	smn1	98	54.965	ENSPKIG00000011096	smn1	100	53.986	Paramormyrops_kingsleyae
ENSGMOG00000017279	smn1	89	49.042	ENSPSIG00000014787	-	83	49.612	Pelodiscus_sinensis
ENSGMOG00000017279	smn1	98	59.516	ENSPMGG00000012285	smn1	97	65.517	Periophthalmus_magnuspinnatus
ENSGMOG00000017279	smn1	93	37.102	ENSPMAG00000005004	smn1	99	32.781	Petromyzon_marinus
ENSGMOG00000017279	smn1	95	55.311	ENSPCIG00000025764	-	96	52.536	Phascolarctos_cinereus
ENSGMOG00000017279	smn1	98	63.604	ENSPFOG00000007786	smn1	100	62.456	Poecilia_formosa
ENSGMOG00000017279	smn1	98	63.958	ENSPLAG00000012071	smn1	100	65.724	Poecilia_latipinna
ENSGMOG00000017279	smn1	98	63.604	ENSPMEG00000017085	smn1	100	62.456	Poecilia_mexicana
ENSGMOG00000017279	smn1	98	63.958	ENSPREG00000005824	smn1	100	65.724	Poecilia_reticulata
ENSGMOG00000017279	smn1	85	35.745	ENSPPYG00000019189	-	99	35.865	Pongo_abelii
ENSGMOG00000017279	smn1	89	49.425	ENSPPYG00000015533	-	95	50.192	Pongo_abelii
ENSGMOG00000017279	smn1	88	48.315	ENSPCAG00000004187	-	97	49.438	Procavia_capensis
ENSGMOG00000017279	smn1	60	47.590	ENSPCOG00000022307	-	65	50.694	Propithecus_coquereli
ENSGMOG00000017279	smn1	93	48.561	ENSPVAG00000005977	-	95	50.903	Pteropus_vampyrus
ENSGMOG00000017279	smn1	98	66.078	ENSPNYG00000014148	smn1	100	65.724	Pundamilia_nyererei
ENSGMOG00000017279	smn1	99	61.754	ENSPNAG00000014007	smn1	88	61.053	Pygocentrus_nattereri
ENSGMOG00000017279	smn1	99	45.296	ENSRNOG00000018067	Smn1	98	46.341	Rattus_norvegicus
ENSGMOG00000017279	smn1	93	50.368	ENSRBIG00000037052	-	95	49.462	Rhinopithecus_bieti
ENSGMOG00000017279	smn1	93	42.910	ENSRBIG00000036775	-	92	44.318	Rhinopithecus_bieti
ENSGMOG00000017279	smn1	93	50.368	ENSRROG00000039399	-	96	49.077	Rhinopithecus_roxellana
ENSGMOG00000017279	smn1	96	44.118	ENSRROG00000031088	-	95	43.023	Rhinopithecus_roxellana
ENSGMOG00000017279	smn1	93	47.287	ENSSBOG00000011665	-	95	47.101	Saimiri_boliviensis_boliviensis
ENSGMOG00000017279	smn1	53	52.667	ENSSBOG00000020112	-	52	52.667	Saimiri_boliviensis_boliviensis
ENSGMOG00000017279	smn1	95	55.311	ENSSHAG00000001499	-	97	51.880	Sarcophilus_harrisii
ENSGMOG00000017279	smn1	98	55.172	ENSSFOG00015015507	smn1	100	57.500	Scleropages_formosus
ENSGMOG00000017279	smn1	98	62.057	ENSSMAG00000007922	smn1	100	63.958	Scophthalmus_maximus
ENSGMOG00000017279	smn1	98	66.197	ENSSDUG00000018533	smn1	100	67.606	Seriola_dumerili
ENSGMOG00000017279	smn1	98	66.549	ENSSLDG00000021135	smn1	100	67.958	Seriola_lalandi_dorsalis
ENSGMOG00000017279	smn1	93	51.301	ENSSPUG00000000373	-	96	46.975	Sphenodon_punctatus
ENSGMOG00000017279	smn1	98	66.078	ENSSPAG00000004345	smn1	100	67.138	Stegastes_partitus
ENSGMOG00000017279	smn1	74	50.000	ENSSSCG00000029127	-	71	68.966	Sus_scrofa
ENSGMOG00000017279	smn1	92	47.464	ENSSSCG00000016970	-	95	51.613	Sus_scrofa
ENSGMOG00000017279	smn1	92	46.570	ENSTGUG00000001548	-	99	45.126	Taeniopygia_guttata
ENSGMOG00000017279	smn1	98	57.857	ENSTRUG00000000736	smn	100	60.854	Takifugu_rubripes
ENSGMOG00000017279	smn1	98	57.193	ENSTNIG00000009892	smn1	100	57.544	Tetraodon_nigroviridis
ENSGMOG00000017279	smn1	64	49.451	ENSTBEG00000002399	-	86	49.457	Tupaia_belangeri
ENSGMOG00000017279	smn1	92	46.667	ENSTTRG00000005080	-	91	52.652	Tursiops_truncatus
ENSGMOG00000017279	smn1	63	51.111	ENSUAMG00000024947	-	65	50.543	Ursus_americanus
ENSGMOG00000017279	smn1	93	48.375	ENSUMAG00000007842	-	71	50.903	Ursus_maritimus
ENSGMOG00000017279	smn1	89	45.627	ENSVPAG00000009887	-	97	46.269	Vicugna_pacos
ENSGMOG00000017279	smn1	92	49.091	ENSVVUG00000006934	-	96	49.819	Vulpes_vulpes
ENSGMOG00000017279	smn1	85	30.000	ENSXETG00000004912	-	81	48.276	Xenopus_tropicalis
ENSGMOG00000017279	smn1	93	54.307	ENSXETG00000018189	smn2	95	53.091	Xenopus_tropicalis
ENSGMOG00000017279	smn1	98	64.311	ENSXMAG00000001521	smn1	100	65.724	Xiphophorus_maculatus