EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000017436 (Gene tree)
Gene ID: -
Gene Symbol: hfm1
Alias: si:ch211-83f14.5
Full Name: HFM1%2C ATP-dependent DNA helicase homolog (S. cerevisiae)
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 14036 bases
Position: chrGeneScaffold_4461:429148-443183
Accession: ZDB-GENE-061207-43
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000018770	ResIII	PF04851.15	2.6e-10	1	1
ENSGMOP00000018770	DEAD	PF00270.29	2.9e-27	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000019228	-	2745	-	ENSGMOP00000018770	915 (aa)	-	UPI00023F42C3

Gene Model

Click here to download ENSGMOG00000017436's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000017436's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000017436	hfm1	69	33.070	ENSGMOG00000004881	snrnp200	57	33.070
ENSGMOG00000017436	hfm1	69	33.282	ENSGMOG00000018158	ascc3	58	33.282

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000017436	hfm1	100	60.729	ENSG00000162669	HFM1	66	60.729	Homo_sapiens
ENSGMOG00000017436	hfm1	85	74.605	ENSAPOG00000005304	hfm1	93	74.605	Acanthochromis_polyacanthus
ENSGMOG00000017436	hfm1	100	61.314	ENSAMEG00000000432	HFM1	66	61.314	Ailuropoda_melanoleuca
ENSGMOG00000017436	hfm1	98	68.922	ENSACIG00000021553	hfm1	84	68.922	Amphilophus_citrinellus
ENSGMOG00000017436	hfm1	85	74.757	ENSAOCG00000022839	hfm1	96	76.671	Amphiprion_ocellaris
ENSGMOG00000017436	hfm1	85	74.756	ENSAPEG00000014316	hfm1	96	77.370	Amphiprion_percula
ENSGMOG00000017436	hfm1	100	74.404	ENSATEG00000019181	hfm1	80	73.465	Anabas_testudineus
ENSGMOG00000017436	hfm1	100	61.100	ENSAPLG00000013639	HFM1	66	61.100	Anas_platyrhynchos
ENSGMOG00000017436	hfm1	100	58.958	ENSANAG00000029513	HFM1	66	58.958	Aotus_nancymaae
ENSGMOG00000017436	hfm1	98	68.584	ENSACLG00000009033	hfm1	95	71.814	Astatotilapia_calliptera
ENSGMOG00000017436	hfm1	100	67.864	ENSAMXG00000006108	hfm1	67	67.864	Astyanax_mexicanus
ENSGMOG00000017436	hfm1	100	60.960	ENSBTAG00000020856	HFM1	66	60.960	Bos_taurus
ENSGMOG00000017436	hfm1	100	59.834	ENSCJAG00000001843	HFM1	66	59.834	Callithrix_jacchus
ENSGMOG00000017436	hfm1	100	61.442	ENSCAFG00000020187	HFM1	66	61.442	Canis_familiaris
ENSGMOG00000017436	hfm1	100	60.417	ENSTSYG00000014250	HFM1	66	60.417	Carlito_syrichta
ENSGMOG00000017436	hfm1	100	60.271	ENSCPOG00000007421	HFM1	68	60.271	Cavia_porcellus
ENSGMOG00000017436	hfm1	100	59.625	ENSCCAG00000033206	HFM1	66	59.625	Cebus_capucinus
ENSGMOG00000017436	hfm1	100	59.938	ENSCATG00000030987	HFM1	66	59.938	Cercocebus_atys
ENSGMOG00000017436	hfm1	99	60.021	ENSCLAG00000005173	HFM1	64	60.021	Chinchilla_lanigera
ENSGMOG00000017436	hfm1	71	50.698	ENSCSAVG00000005094	-	100	50.698	Ciona_savignyi
ENSGMOG00000017436	hfm1	97	56.522	ENSCGRG00001016995	Hfm1	66	56.342	Cricetulus_griseus_chok1gshd
ENSGMOG00000017436	hfm1	99	59.167	ENSCGRG00000017181	Hfm1	66	58.982	Cricetulus_griseus_crigri
ENSGMOG00000017436	hfm1	99	69.937	ENSCSEG00000017659	hfm1	88	70.219	Cynoglossus_semilaevis
ENSGMOG00000017436	hfm1	73	73.034	ENSCVAG00000005075	hfm1	86	73.034	Cyprinodon_variegatus
ENSGMOG00000017436	hfm1	88	69.575	ENSDARG00000104288	hfm1	76	69.575	Danio_rerio
ENSGMOG00000017436	hfm1	99	60.000	ENSDNOG00000004776	HFM1	64	60.000	Dasypus_novemcinctus
ENSGMOG00000017436	hfm1	99	58.256	ENSDORG00000014661	Hfm1	67	58.256	Dipodomys_ordii
ENSGMOG00000017436	hfm1	98	59.428	ENSEASG00005015424	HFM1	90	59.428	Equus_asinus_asinus
ENSGMOG00000017436	hfm1	100	61.435	ENSECAG00000024039	HFM1	64	61.435	Equus_caballus
ENSGMOG00000017436	hfm1	94	72.946	ENSELUG00000018944	hfm1	97	72.946	Esox_lucius
ENSGMOG00000017436	hfm1	99	61.065	ENSFCAG00000029116	HFM1	66	61.065	Felis_catus
ENSGMOG00000017436	hfm1	100	61.123	ENSFALG00000001781	HFM1	66	61.186	Ficedula_albicollis
ENSGMOG00000017436	hfm1	100	60.187	ENSFDAG00000020816	HFM1	64	60.187	Fukomys_damarensis
ENSGMOG00000017436	hfm1	97	68.770	ENSGAFG00000018093	hfm1	91	71.798	Gambusia_affinis
ENSGMOG00000017436	hfm1	100	78.214	ENSGACG00000015686	hfm1	99	78.214	Gasterosteus_aculeatus
ENSGMOG00000017436	hfm1	100	60.625	ENSGGOG00000038524	HFM1	66	60.625	Gorilla_gorilla
ENSGMOG00000017436	hfm1	97	70.374	ENSHBUG00000007309	hfm1	86	70.374	Haplochromis_burtoni
ENSGMOG00000017436	hfm1	84	71.075	ENSHCOG00000019632	hfm1	97	71.075	Hippocampus_comes
ENSGMOG00000017436	hfm1	98	68.710	ENSIPUG00000017020	hfm1	91	70.553	Ictalurus_punctatus
ENSGMOG00000017436	hfm1	100	58.921	ENSJJAG00000017198	Hfm1	68	58.921	Jaculus_jaculus
ENSGMOG00000017436	hfm1	93	69.512	ENSKMAG00000002282	hfm1	90	69.069	Kryptolebias_marmoratus
ENSGMOG00000017436	hfm1	99	68.998	ENSLBEG00000006759	hfm1	95	73.966	Labrus_bergylta
ENSGMOG00000017436	hfm1	99	61.841	ENSLACG00000010698	HFM1	91	61.841	Latimeria_chalumnae
ENSGMOG00000017436	hfm1	100	66.598	ENSLOCG00000004931	hfm1	89	66.598	Lepisosteus_oculatus
ENSGMOG00000017436	hfm1	68	70.080	ENSLAFG00000015903	-	84	70.080	Loxodonta_africana
ENSGMOG00000017436	hfm1	100	56.877	ENSMFAG00000003649	HFM1	66	56.877	Macaca_fascicularis
ENSGMOG00000017436	hfm1	100	60.042	ENSMMUG00000006819	HFM1	66	60.042	Macaca_mulatta
ENSGMOG00000017436	hfm1	85	73.325	ENSMAMG00000004623	hfm1	97	73.325	Mastacembelus_armatus
ENSGMOG00000017436	hfm1	98	68.797	ENSMZEG00005004679	hfm1	95	71.936	Maylandia_zebra
ENSGMOG00000017436	hfm1	80	62.710	ENSMGAG00000008437	HFM1	96	62.710	Meleagris_gallopavo
ENSGMOG00000017436	hfm1	99	59.143	ENSMAUG00000018858	Hfm1	66	58.958	Mesocricetus_auratus
ENSGMOG00000017436	hfm1	100	60.291	ENSMICG00000037935	HFM1	66	60.291	Microcebus_murinus
ENSGMOG00000017436	hfm1	99	59.437	ENSMOCG00000014812	Hfm1	66	59.252	Microtus_ochrogaster
ENSGMOG00000017436	hfm1	93	70.917	ENSMMOG00000006148	hfm1	92	74.393	Mola_mola
ENSGMOG00000017436	hfm1	99	70.459	ENSMALG00000002401	hfm1	94	75.030	Monopterus_albus
ENSGMOG00000017436	hfm1	93	71.875	MGP_CAROLIEiJ_G0027496	Hfm1	62	71.875	Mus_caroli
ENSGMOG00000017436	hfm1	99	59.499	ENSMUSG00000043410	Hfm1	66	59.499	Mus_musculus
ENSGMOG00000017436	hfm1	99	60.084	MGP_PahariEiJ_G0017268	Hfm1	66	60.084	Mus_pahari
ENSGMOG00000017436	hfm1	99	59.708	MGP_SPRETEiJ_G0028495	Hfm1	66	59.708	Mus_spretus
ENSGMOG00000017436	hfm1	100	61.146	ENSMPUG00000004594	HFM1	64	61.146	Mustela_putorius_furo
ENSGMOG00000017436	hfm1	100	59.834	ENSMLUG00000010200	HFM1	66	59.834	Myotis_lucifugus
ENSGMOG00000017436	hfm1	97	68.777	ENSNBRG00000002910	hfm1	97	71.985	Neolamprologus_brichardi
ENSGMOG00000017436	hfm1	100	57.884	ENSNLEG00000010285	HFM1	66	57.884	Nomascus_leucogenys
ENSGMOG00000017436	hfm1	96	58.953	ENSMEUG00000015788	HFM1	61	58.953	Notamacropus_eugenii
ENSGMOG00000017436	hfm1	86	57.863	ENSOPRG00000013916	HFM1	58	57.863	Ochotona_princeps
ENSGMOG00000017436	hfm1	99	71.592	ENSONIG00000010590	hfm1	92	71.488	Oreochromis_niloticus
ENSGMOG00000017436	hfm1	84	71.147	ENSORLG00000026844	hfm1	99	71.147	Oryzias_latipes
ENSGMOG00000017436	hfm1	99	60.230	ENSORLG00020002951	hfm1	76	60.021	Oryzias_latipes_hni
ENSGMOG00000017436	hfm1	99	68.366	ENSOMEG00000016474	hfm1	66	68.366	Oryzias_melastigma
ENSGMOG00000017436	hfm1	100	60.938	ENSOGAG00000032369	HFM1	78	60.938	Otolemur_garnettii
ENSGMOG00000017436	hfm1	100	60.354	ENSOARG00000015812	HFM1	66	60.354	Ovis_aries
ENSGMOG00000017436	hfm1	100	60.938	ENSPPAG00000024582	HFM1	72	60.938	Pan_paniscus
ENSGMOG00000017436	hfm1	99	61.065	ENSPPRG00000003270	HFM1	66	61.065	Panthera_pardus
ENSGMOG00000017436	hfm1	99	61.169	ENSPTIG00000018881	HFM1	66	61.169	Panthera_tigris_altaica
ENSGMOG00000017436	hfm1	100	60.833	ENSPTRG00000000948	HFM1	66	60.833	Pan_troglodytes
ENSGMOG00000017436	hfm1	100	60.146	ENSPANG00000009838	HFM1	66	60.146	Papio_anubis
ENSGMOG00000017436	hfm1	93	67.933	ENSPKIG00000003810	hfm1	94	68.881	Paramormyrops_kingsleyae
ENSGMOG00000017436	hfm1	86	70.646	ENSPMGG00000011059	hfm1	100	70.646	Periophthalmus_magnuspinnatus
ENSGMOG00000017436	hfm1	99	59.352	ENSPEMG00000022852	Hfm1	66	59.352	Peromyscus_maniculatus_bairdii
ENSGMOG00000017436	hfm1	100	60.584	ENSPCIG00000014233	HFM1	65	60.584	Phascolarctos_cinereus
ENSGMOG00000017436	hfm1	99	70.881	ENSPFOG00000017194	hfm1	92	70.881	Poecilia_formosa
ENSGMOG00000017436	hfm1	97	70.802	ENSPLAG00000000571	hfm1	84	70.802	Poecilia_latipinna
ENSGMOG00000017436	hfm1	97	70.896	ENSPMEG00000019475	hfm1	85	70.896	Poecilia_mexicana
ENSGMOG00000017436	hfm1	97	70.771	ENSPREG00000007803	hfm1	91	72.256	Poecilia_reticulata
ENSGMOG00000017436	hfm1	100	60.625	ENSPPYG00000001163	HFM1	66	60.625	Pongo_abelii
ENSGMOG00000017436	hfm1	99	55.312	ENSPVAG00000009713	HFM1	68	55.312	Pteropus_vampyrus
ENSGMOG00000017436	hfm1	97	68.556	ENSPNYG00000001795	hfm1	95	71.814	Pundamilia_nyererei
ENSGMOG00000017436	hfm1	86	70.539	ENSPNAG00000010865	hfm1	83	70.539	Pygocentrus_nattereri
ENSGMOG00000017436	hfm1	99	60.293	ENSRNOG00000023299	Hfm1	66	60.293	Rattus_norvegicus
ENSGMOG00000017436	hfm1	100	60.063	ENSRROG00000045569	HFM1	66	60.063	Rhinopithecus_roxellana
ENSGMOG00000017436	hfm1	100	60.250	ENSSBOG00000027456	HFM1	67	60.250	Saimiri_boliviensis_boliviensis
ENSGMOG00000017436	hfm1	64	68.750	ENSSHAG00000014616	-	67	68.750	Sarcophilus_harrisii
ENSGMOG00000017436	hfm1	100	69.152	ENSSFOG00015020129	hfm1	65	69.152	Scleropages_formosus
ENSGMOG00000017436	hfm1	93	73.157	ENSSMAG00000006907	hfm1	87	73.157	Scophthalmus_maximus
ENSGMOG00000017436	hfm1	86	74.788	ENSSDUG00000011424	hfm1	93	74.788	Seriola_dumerili
ENSGMOG00000017436	hfm1	86	74.818	ENSSLDG00000016386	hfm1	92	74.818	Seriola_lalandi_dorsalis
ENSGMOG00000017436	hfm1	96	68.662	ENSSPAG00000001023	hfm1	93	74.515	Stegastes_partitus
ENSGMOG00000017436	hfm1	100	61.186	ENSSSCG00000006912	HFM1	70	61.186	Sus_scrofa
ENSGMOG00000017436	hfm1	99	60.290	ENSTGUG00000006172	HFM1	99	60.290	Taeniopygia_guttata
ENSGMOG00000017436	hfm1	51	76.759	ENSTNIG00000006962	hfm1	96	76.759	Tetraodon_nigroviridis
ENSGMOG00000017436	hfm1	99	60.625	ENSTTRG00000013933	HFM1	67	60.625	Tursiops_truncatus
ENSGMOG00000017436	hfm1	100	59.290	ENSVPAG00000011331	HFM1	66	59.290	Vicugna_pacos
ENSGMOG00000017436	hfm1	98	59.448	ENSVVUG00000020760	HFM1	90	59.448	Vulpes_vulpes
ENSGMOG00000017436	hfm1	84	72.626	ENSXMAG00000004178	hfm1	90	72.626	Xiphophorus_maculatus