EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000017644 (Gene tree)
Gene ID: -
Gene Symbol: si:ch211-247i17.1
Alias: -
Full Name: si:ch211-247i17.1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 1646 bases
Position: chrGeneScaffold_1298:67315-68960
Accession: ZDB-GENE-131121-275
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000018967	MMR_HSR1	PF01926.23	6.2e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000019426	-	525	-	ENSGMOP00000018967	175 (aa)	-	UPI00023F3DD3

Gene Model

Click here to download ENSGMOG00000017644's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000017644's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000017644	si:ch211-247i17.1	94	38.788	ENSGMOG00000004095	rab41	77	38.788
ENSGMOG00000017644	si:ch211-247i17.1	88	38.365	ENSGMOG00000004096	-	71	38.365
ENSGMOG00000017644	si:ch211-247i17.1	92	40.373	ENSGMOG00000002552	rab30	78	40.373
ENSGMOG00000017644	si:ch211-247i17.1	85	33.784	ENSGMOG00000011766	-	94	33.784
ENSGMOG00000017644	si:ch211-247i17.1	91	30.488	ENSGMOG00000020148	-	84	30.488
ENSGMOG00000017644	si:ch211-247i17.1	87	32.911	ENSGMOG00000020144	rab9a	76	32.911
ENSGMOG00000017644	si:ch211-247i17.1	91	31.250	ENSGMOG00000016608	rab18b	76	31.250
ENSGMOG00000017644	si:ch211-247i17.1	85	33.108	ENSGMOG00000005102	rab23	67	35.000
ENSGMOG00000017644	si:ch211-247i17.1	92	36.747	ENSGMOG00000010022	-	78	36.747
ENSGMOG00000017644	si:ch211-247i17.1	86	36.667	ENSGMOG00000006450	rab11al	73	36.667
ENSGMOG00000017644	si:ch211-247i17.1	88	35.714	ENSGMOG00000001834	rab4b	73	35.714
ENSGMOG00000017644	si:ch211-247i17.1	97	37.427	ENSGMOG00000012335	rab12	70	37.427
ENSGMOG00000017644	si:ch211-247i17.1	93	31.737	ENSGMOG00000006175	rab33a	70	31.737
ENSGMOG00000017644	si:ch211-247i17.1	71	32.000	ENSGMOG00000002416	arl8bb	65	32.000
ENSGMOG00000017644	si:ch211-247i17.1	85	35.099	ENSGMOG00000011665	zgc:101559	71	35.099
ENSGMOG00000017644	si:ch211-247i17.1	91	35.625	ENSGMOG00000002868	rab5aa	73	35.625
ENSGMOG00000017644	si:ch211-247i17.1	87	38.065	ENSGMOG00000019073	-	74	38.065
ENSGMOG00000017644	si:ch211-247i17.1	92	34.161	ENSGMOG00000000532	-	74	34.161
ENSGMOG00000017644	si:ch211-247i17.1	67	33.051	ENSGMOG00000013490	arl8a	62	33.051
ENSGMOG00000017644	si:ch211-247i17.1	93	33.537	ENSGMOG00000014481	rab36	86	33.537
ENSGMOG00000017644	si:ch211-247i17.1	90	36.076	ENSGMOG00000017688	rab35b	77	36.076
ENSGMOG00000017644	si:ch211-247i17.1	92	33.133	ENSGMOG00000007712	RAB7A	78	33.133
ENSGMOG00000017644	si:ch211-247i17.1	91	36.250	ENSGMOG00000009668	-	72	36.250
ENSGMOG00000017644	si:ch211-247i17.1	95	54.491	ENSGMOG00000018741	-	78	54.491
ENSGMOG00000017644	si:ch211-247i17.1	91	36.250	ENSGMOG00000003577	-	79	36.250
ENSGMOG00000017644	si:ch211-247i17.1	87	36.129	ENSGMOG00000000885	rab33ba	72	36.129
ENSGMOG00000017644	si:ch211-247i17.1	91	38.650	ENSGMOG00000008450	-	74	38.650
ENSGMOG00000017644	si:ch211-247i17.1	87	30.519	ENSGMOG00000010581	kras	79	30.519
ENSGMOG00000017644	si:ch211-247i17.1	92	37.267	ENSGMOG00000004979	-	74	37.267
ENSGMOG00000017644	si:ch211-247i17.1	88	41.558	ENSGMOG00000006444	rab25b	90	41.558
ENSGMOG00000017644	si:ch211-247i17.1	93	30.864	ENSGMOG00000013070	rab22a	82	30.864
ENSGMOG00000017644	si:ch211-247i17.1	89	34.783	ENSGMOG00000018475	RAB29	95	34.783
ENSGMOG00000017644	si:ch211-247i17.1	92	33.951	ENSGMOG00000007140	rab34b	79	33.951
ENSGMOG00000017644	si:ch211-247i17.1	92	36.025	ENSGMOG00000004888	rab1ab	80	36.025
ENSGMOG00000017644	si:ch211-247i17.1	95	34.320	ENSGMOG00000007293	rab1ba	82	34.320
ENSGMOG00000017644	si:ch211-247i17.1	88	38.961	ENSGMOG00000008355	rab11a	70	38.961
ENSGMOG00000017644	si:ch211-247i17.1	89	35.897	ENSGMOG00000001876	-	89	35.897
ENSGMOG00000017644	si:ch211-247i17.1	89	35.256	ENSGMOG00000007127	RAB5A	84	35.256
ENSGMOG00000017644	si:ch211-247i17.1	91	36.875	ENSGMOG00000009211	rab11bb	72	36.875
ENSGMOG00000017644	si:ch211-247i17.1	91	37.654	ENSGMOG00000010808	RAB39B	75	37.654
ENSGMOG00000017644	si:ch211-247i17.1	83	34.000	ENSGMOG00000012401	rheb	78	34.000
ENSGMOG00000017644	si:ch211-247i17.1	88	37.662	ENSGMOG00000007390	rab11ba	69	37.662
ENSGMOG00000017644	si:ch211-247i17.1	86	30.128	ENSGMOG00000007564	rhebl1	82	30.128
ENSGMOG00000017644	si:ch211-247i17.1	92	40.994	ENSGMOG00000003610	rab15	75	40.994
ENSGMOG00000017644	si:ch211-247i17.1	100	48.571	ENSGMOG00000006968	-	86	48.571
ENSGMOG00000017644	si:ch211-247i17.1	88	30.323	ENSGMOG00000015174	si:dkey-16l2.16	93	30.323
ENSGMOG00000017644	si:ch211-247i17.1	91	35.625	ENSGMOG00000015096	rab5c	72	35.625
ENSGMOG00000017644	si:ch211-247i17.1	91	40.000	ENSGMOG00000016277	RAB15	75	40.000
ENSGMOG00000017644	si:ch211-247i17.1	92	33.735	ENSGMOG00000011308	-	79	33.735

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000017644	si:ch211-247i17.1	95	42.012	WBGene00007067	4R79.2	54	42.012	Caenorhabditis_elegans
ENSGMOG00000017644	si:ch211-247i17.1	97	66.471	ENSGACG00000005397	si:ch211-247i17.1	97	66.471	Gasterosteus_aculeatus
ENSGMOG00000017644	si:ch211-247i17.1	94	57.576	ENSMGAG00000009012	-	96	57.576	Meleagris_gallopavo
ENSGMOG00000017644	si:ch211-247i17.1	94	55.152	ENSPSIG00000012698	-	96	55.152	Pelodiscus_sinensis
ENSGMOG00000017644	si:ch211-247i17.1	94	58.788	ENSTGUG00000009776	-	95	58.788	Taeniopygia_guttata
ENSGMOG00000017644	si:ch211-247i17.1	94	57.229	ENSTNIG00000001043	si:ch211-247i17.1	81	57.229	Tetraodon_nigroviridis
ENSGMOG00000017644	si:ch211-247i17.1	61	65.741	ENSXMAG00000003735	si:ch211-247i17.1	91	65.741	Xiphophorus_maculatus