EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSGMOG00000018235 (Gene tree)
Gene ID
-
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Gadus_morhua
Status
putative
Strand
Minus strand
Length
1188 bases
Position
chrGeneScaffold_1223:69915-71102
Accession
ZDB-GENE-070822-23
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSGMOP00000019615LSMPF01423.223e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSGMOT00000020094-270-ENSGMOP0000001961590 (aa)-UPI00023F4253
Gene Model
Click here to download ENSGMOG00000018235's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000018235's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSGMOG00000018235lsm57731.507ENSGMOG00000016322snrpe7931.507
ENSGMOG00000018235lsm58333.333ENSGMOG00000011024lsm37933.333
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSGMOG00000018235lsm510094.444ENSG00000106355LSM59896.721Homo_sapiens
ENSGMOG00000018235lsm510097.778ENSAPOG00000020779LSM510097.647Acanthochromis_polyacanthus
ENSGMOG00000018235lsm59196.341ENSAPOG00000011743LSM598100.000Acanthochromis_polyacanthus
ENSGMOG00000018235lsm510094.444ENSAMEG00000006700LSM59994.444Ailuropoda_melanoleuca
ENSGMOG00000018235lsm59461.176ENSACIG00000019185lsm59561.176Amphilophus_citrinellus
ENSGMOG00000018235lsm510097.778ENSAOCG00000001636lsm59997.778Amphiprion_ocellaris
ENSGMOG00000018235lsm568100.000ENSAPEG00000008201lsm598100.000Amphiprion_percula
ENSGMOG00000018235lsm510097.778ENSAPEG00000008151lsm59997.778Amphiprion_percula
ENSGMOG00000018235lsm59198.780ENSATEG00000020470lsm59863.333Anabas_testudineus
ENSGMOG00000018235lsm58297.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSGMOG00000018235lsm56292.857ENSACAG00000009530LSM59392.857Anolis_carolinensis
ENSGMOG00000018235lsm510073.333ENSANAG00000037758-9973.333Aotus_nancymaae
ENSGMOG00000018235lsm59992.135ENSANAG00000024192-9392.135Aotus_nancymaae
ENSGMOG00000018235lsm510095.556ENSANAG00000034409-9995.556Aotus_nancymaae
ENSGMOG00000018235lsm594100.000ENSACLG00000012891lsm597100.000Astatotilapia_calliptera
ENSGMOG00000018235lsm510083.871ENSAMXG00000035543lsm59983.871Astyanax_mexicanus
ENSGMOG00000018235lsm55375.000ENSBTAG00000052014-6375.000Bos_taurus
ENSGMOG00000018235lsm510094.444ENSBTAG00000002332LSM59994.444Bos_taurus
ENSGMOG00000018235lsm510073.333WBGene00003079lsm-59973.333Caenorhabditis_elegans
ENSGMOG00000018235lsm510094.444ENSCJAG00000047379LSM58184.615Callithrix_jacchus
ENSGMOG00000018235lsm59982.022ENSCJAG00000005678-9982.022Callithrix_jacchus
ENSGMOG00000018235lsm510093.333ENSCAFG00000019261-9993.333Canis_familiaris
ENSGMOG00000018235lsm55686.000ENSCAFG00000030781-5886.000Canis_familiaris
ENSGMOG00000018235lsm510094.444ENSCAFG00020004946LSM59994.444Canis_lupus_dingo
ENSGMOG00000018235lsm510092.222ENSCHIG00000004079-9992.222Capra_hircus
ENSGMOG00000018235lsm58272.973ENSCHIG00000021428-9570.455Capra_hircus
ENSGMOG00000018235lsm510094.444ENSCHIG00000024539LSM59994.444Capra_hircus
ENSGMOG00000018235lsm510082.222ENSTSYG00000028728-9982.222Carlito_syrichta
ENSGMOG00000018235lsm510068.889ENSTSYG00000036637-9968.889Carlito_syrichta
ENSGMOG00000018235lsm510076.667ENSTSYG00000026530-9076.667Carlito_syrichta
ENSGMOG00000018235lsm510094.444ENSTSYG00000006449-9994.444Carlito_syrichta
ENSGMOG00000018235lsm58290.541ENSCAPG00000006980LSM59990.541Cavia_aperea
ENSGMOG00000018235lsm510094.444ENSCPOG00000036386LSM59994.444Cavia_porcellus
ENSGMOG00000018235lsm510075.556ENSCCAG00000032792-9975.556Cebus_capucinus
ENSGMOG00000018235lsm510094.444ENSCCAG00000037808-9994.444Cebus_capucinus
ENSGMOG00000018235lsm510063.333ENSCCAG00000037334-9963.333Cebus_capucinus
ENSGMOG00000018235lsm510092.222ENSCCAG00000032123-9992.222Cebus_capucinus
ENSGMOG00000018235lsm510093.333ENSCCAG00000000821-9993.333Cebus_capucinus
ENSGMOG00000018235lsm510094.444ENSCATG00000040218LSM59896.721Cercocebus_atys
ENSGMOG00000018235lsm59983.146ENSCATG00000014790-9590.909Cercocebus_atys
ENSGMOG00000018235lsm510094.444ENSCLAG00000000202LSM59994.444Chinchilla_lanigera
ENSGMOG00000018235lsm510080.000ENSCLAG00000005062-8980.000Chinchilla_lanigera
ENSGMOG00000018235lsm58394.667ENSCHOG00000005335LSM59994.667Choloepus_hoffmanni
ENSGMOG00000018235lsm510094.444ENSCPBG00000013685LSM59994.444Chrysemys_picta_bellii
ENSGMOG00000018235lsm59488.235ENSCING00000020625-9688.235Ciona_intestinalis
ENSGMOG00000018235lsm59488.235ENSCSAVG00000001439-9788.235Ciona_savignyi
ENSGMOG00000018235lsm510094.444ENSCANG00000039909LSM59896.721Colobus_angolensis_palliatus
ENSGMOG00000018235lsm510094.444ENSCGRG00001015461Lsm59994.444Cricetulus_griseus_chok1gshd
ENSGMOG00000018235lsm58297.297ENSCGRG00000007677Lsm59997.297Cricetulus_griseus_crigri
ENSGMOG00000018235lsm510060.000ENSCSEG00000015286lsm59860.000Cynoglossus_semilaevis
ENSGMOG00000018235lsm5100100.000ENSCVAG00000004262lsm599100.000Cyprinodon_variegatus
ENSGMOG00000018235lsm510096.667ENSDARG00000071573lsm59898.361Danio_rerio
ENSGMOG00000018235lsm59783.908ENSDNOG00000049495-9683.908Dasypus_novemcinctus
ENSGMOG00000018235lsm510094.444ENSDNOG00000034958LSM59994.444Dasypus_novemcinctus
ENSGMOG00000018235lsm510094.444ENSDORG00000009422Lsm59994.444Dipodomys_ordii
ENSGMOG00000018235lsm59979.775FBgn0035675CG66109879.775Drosophila_melanogaster
ENSGMOG00000018235lsm59876.136ENSETEG00000010651-9776.136Echinops_telfairi
ENSGMOG00000018235lsm59962.921ENSETEG00000000777-9962.921Echinops_telfairi
ENSGMOG00000018235lsm58178.082ENSETEG00000016074-9778.082Echinops_telfairi
ENSGMOG00000018235lsm510094.444ENSETEG00000018068LSM59994.444Echinops_telfairi
ENSGMOG00000018235lsm59973.034ENSETEG00000001469-9773.034Echinops_telfairi
ENSGMOG00000018235lsm510093.333ENSEBUG00000008540lsm59993.333Eptatretus_burgeri
ENSGMOG00000018235lsm510094.444ENSEASG00005003500LSM59994.444Equus_asinus_asinus
ENSGMOG00000018235lsm510080.000ENSECAG00000018445LSM59980.000Equus_caballus
ENSGMOG00000018235lsm56392.982ENSEEUG00000004102LSM59592.982Erinaceus_europaeus
ENSGMOG00000018235lsm510098.889ENSELUG00000007792lsm59998.889Esox_lucius
ENSGMOG00000018235lsm510094.444ENSFCAG00000000230LSM59994.444Felis_catus
ENSGMOG00000018235lsm58397.333ENSFALG00000001892LSM59097.333Ficedula_albicollis
ENSGMOG00000018235lsm59066.667ENSFDAG00000008685-9666.667Fukomys_damarensis
ENSGMOG00000018235lsm510094.444ENSFDAG00000008767LSM59994.444Fukomys_damarensis
ENSGMOG00000018235lsm59481.395ENSFHEG00000004011lsm59381.395Fundulus_heteroclitus
ENSGMOG00000018235lsm510094.444ENSGALG00000041625LSM59994.444Gallus_gallus
ENSGMOG00000018235lsm568100.000ENSGAFG00000016824lsm598100.000Gambusia_affinis
ENSGMOG00000018235lsm510098.889ENSGACG00000005528lsm59998.889Gasterosteus_aculeatus
ENSGMOG00000018235lsm510094.444ENSGAGG00000015593LSM59994.444Gopherus_agassizii
ENSGMOG00000018235lsm510094.444ENSGGOG00000043469LSM59994.444Gorilla_gorilla
ENSGMOG00000018235lsm594100.000ENSHBUG00000013773lsm597100.000Haplochromis_burtoni
ENSGMOG00000018235lsm510094.444ENSHGLG00000011765LSM59994.444Heterocephalus_glaber_female
ENSGMOG00000018235lsm510091.111ENSHGLG00100015610LSM59991.111Heterocephalus_glaber_male
ENSGMOG00000018235lsm510060.000ENSHCOG00000008288lsm59860.000Hippocampus_comes
ENSGMOG00000018235lsm510097.778ENSIPUG00000021095LSM59997.778Ictalurus_punctatus
ENSGMOG00000018235lsm510094.444ENSSTOG00000012662LSM59994.444Ictidomys_tridecemlineatus
ENSGMOG00000018235lsm59280.000ENSSTOG00000033886-9680.000Ictidomys_tridecemlineatus
ENSGMOG00000018235lsm58887.342ENSJJAG00000004475-10087.342Jaculus_jaculus
ENSGMOG00000018235lsm510092.222ENSJJAG00000012145-9992.222Jaculus_jaculus
ENSGMOG00000018235lsm510067.778ENSJJAG00000016144-9167.778Jaculus_jaculus
ENSGMOG00000018235lsm510096.667ENSKMAG00000021861lsm59996.667Kryptolebias_marmoratus
ENSGMOG00000018235lsm56287.500ENSLBEG00000017379lsm59287.500Labrus_bergylta
ENSGMOG00000018235lsm59198.780ENSLBEG00000009235LSM56598.780Labrus_bergylta
ENSGMOG00000018235lsm510095.556ENSLACG00000022448LSM59995.556Latimeria_chalumnae
ENSGMOG00000018235lsm510097.778ENSLOCG00000012903lsm59997.778Lepisosteus_oculatus
ENSGMOG00000018235lsm510094.444ENSLAFG00000029579LSM59994.444Loxodonta_africana
ENSGMOG00000018235lsm510070.000ENSLAFG00000027938-9970.000Loxodonta_africana
ENSGMOG00000018235lsm510094.444ENSMFAG00000038508LSM59994.444Macaca_fascicularis
ENSGMOG00000018235lsm510092.222ENSMFAG00000030152-9992.222Macaca_fascicularis
ENSGMOG00000018235lsm55389.583ENSMFAG00000031187-8189.583Macaca_fascicularis
ENSGMOG00000018235lsm59984.270ENSMMUG00000039822-9984.270Macaca_mulatta
ENSGMOG00000018235lsm55884.615ENSMMUG00000045129-8184.615Macaca_mulatta
ENSGMOG00000018235lsm510092.222ENSMMUG00000030131-9992.222Macaca_mulatta
ENSGMOG00000018235lsm510092.222ENSMNEG00000037935-9992.222Macaca_nemestrina
ENSGMOG00000018235lsm510094.444ENSMNEG00000015331LSM59896.721Macaca_nemestrina
ENSGMOG00000018235lsm510094.444ENSMLEG00000024945LSM59994.444Mandrillus_leucophaeus
ENSGMOG00000018235lsm59882.955ENSMLEG00000034037-9982.955Mandrillus_leucophaeus
ENSGMOG00000018235lsm510091.111ENSMAMG00000012869lsm59991.111Mastacembelus_armatus
ENSGMOG00000018235lsm594100.000ENSMZEG00005019554lsm597100.000Maylandia_zebra
ENSGMOG00000018235lsm510094.444ENSMGAG00000012117LSM59994.444Meleagris_gallopavo
ENSGMOG00000018235lsm510094.444ENSMAUG00000012222Lsm59994.444Mesocricetus_auratus
ENSGMOG00000018235lsm510093.333ENSMAUG00000008132-9993.333Mesocricetus_auratus
ENSGMOG00000018235lsm59973.034ENSMICG00000033928-9573.034Microcebus_murinus
ENSGMOG00000018235lsm510094.444ENSMICG00000005353LSM59994.444Microcebus_murinus
ENSGMOG00000018235lsm510094.444ENSMOCG00000012018Lsm59994.444Microtus_ochrogaster
ENSGMOG00000018235lsm583100.000ENSMMOG00000004026lsm586100.000Mola_mola
ENSGMOG00000018235lsm56896.721ENSMODG00000013274-9896.721Monodelphis_domestica
ENSGMOG00000018235lsm56893.443ENSMALG00000010343lsm59893.443Monopterus_albus
ENSGMOG00000018235lsm510094.444MGP_CAROLIEiJ_G0028421Lsm59994.444Mus_caroli
ENSGMOG00000018235lsm510094.444ENSMUSG00000091625Lsm59994.444Mus_musculus
ENSGMOG00000018235lsm510094.444MGP_PahariEiJ_G0022171Lsm59994.444Mus_pahari
ENSGMOG00000018235lsm510094.444MGP_SPRETEiJ_G0029423Lsm59994.444Mus_spretus
ENSGMOG00000018235lsm510094.444ENSMLUG00000017028LSM59994.444Myotis_lucifugus
ENSGMOG00000018235lsm510082.609ENSNGAG00000017707-9982.609Nannospalax_galili
ENSGMOG00000018235lsm59974.157ENSNGAG00000022569-9574.157Nannospalax_galili
ENSGMOG00000018235lsm510094.444ENSNGAG00000024142Lsm59994.444Nannospalax_galili
ENSGMOG00000018235lsm56298.214ENSNBRG00000011386lsm57598.214Neolamprologus_brichardi
ENSGMOG00000018235lsm510094.444ENSNLEG00000015268LSM59994.444Nomascus_leucogenys
ENSGMOG00000018235lsm58297.297ENSOPRG00000002443LSM59997.297Ochotona_princeps
ENSGMOG00000018235lsm510094.444ENSODEG00000008258-9994.444Octodon_degus
ENSGMOG00000018235lsm510094.444ENSODEG00000019072-9994.444Octodon_degus
ENSGMOG00000018235lsm58360.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSGMOG00000018235lsm510094.444ENSOCUG00000029043LSM59994.444Oryctolagus_cuniculus
ENSGMOG00000018235lsm510096.667ENSORLG00000027725lsm55896.667Oryzias_latipes
ENSGMOG00000018235lsm59793.103ENSORLG00020003019lsm58693.103Oryzias_latipes_hni
ENSGMOG00000018235lsm510096.667ENSORLG00015003338lsm59996.667Oryzias_latipes_hsok
ENSGMOG00000018235lsm510095.556ENSOMEG00000001078lsm59995.556Oryzias_melastigma
ENSGMOG00000018235lsm510094.444ENSOGAG00000013892LSM59994.444Otolemur_garnettii
ENSGMOG00000018235lsm510094.444ENSOARG00000006944LSM59994.444Ovis_aries
ENSGMOG00000018235lsm510094.444ENSPPAG00000003697-9994.444Pan_paniscus
ENSGMOG00000018235lsm510094.444ENSPPRG00000002550LSM59994.444Panthera_pardus
ENSGMOG00000018235lsm510094.444ENSPTIG00000015604LSM59994.444Panthera_tigris_altaica
ENSGMOG00000018235lsm510094.444ENSPTRG00000019057LSM59994.444Pan_troglodytes
ENSGMOG00000018235lsm510077.778ENSPTRG00000049488-9980.000Pan_troglodytes
ENSGMOG00000018235lsm510094.444ENSPANG00000032179-9994.444Papio_anubis
ENSGMOG00000018235lsm510091.111ENSPANG00000033477-9991.111Papio_anubis
ENSGMOG00000018235lsm59984.270ENSPANG00000032538-9984.270Papio_anubis
ENSGMOG00000018235lsm510097.778ENSPKIG00000011910lsm59997.778Paramormyrops_kingsleyae
ENSGMOG00000018235lsm58297.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSGMOG00000018235lsm568100.000ENSPMGG00000011699lsm598100.000Periophthalmus_magnuspinnatus
ENSGMOG00000018235lsm55291.489ENSPEMG00000019994-8091.489Peromyscus_maniculatus_bairdii
ENSGMOG00000018235lsm510066.667ENSPEMG00000022375-9966.667Peromyscus_maniculatus_bairdii
ENSGMOG00000018235lsm5100100.000ENSPFOG00000001433lsm599100.000Poecilia_formosa
ENSGMOG00000018235lsm5100100.000ENSPLAG00000009665lsm599100.000Poecilia_latipinna
ENSGMOG00000018235lsm5100100.000ENSPMEG00000022265lsm599100.000Poecilia_mexicana
ENSGMOG00000018235lsm568100.000ENSPREG00000022452lsm598100.000Poecilia_reticulata
ENSGMOG00000018235lsm510091.111ENSPPYG00000017661LSM59991.111Pongo_abelii
ENSGMOG00000018235lsm59095.062ENSPCAG00000013740LSM510095.062Procavia_capensis
ENSGMOG00000018235lsm510094.444ENSPVAG00000009786LSM59994.444Pteropus_vampyrus
ENSGMOG00000018235lsm594100.000ENSPNYG00000022236lsm597100.000Pundamilia_nyererei
ENSGMOG00000018235lsm510097.778ENSPNAG00000001887lsm59997.778Pygocentrus_nattereri
ENSGMOG00000018235lsm510094.444ENSRNOG00000042126Lsm59994.444Rattus_norvegicus
ENSGMOG00000018235lsm510091.209ENSRNOG00000027305AABR07065089.19991.209Rattus_norvegicus
ENSGMOG00000018235lsm510094.444ENSRBIG00000030714-9994.444Rhinopithecus_bieti
ENSGMOG00000018235lsm510093.333ENSRBIG00000024431-9993.333Rhinopithecus_bieti
ENSGMOG00000018235lsm510094.444ENSRBIG00000027803-9896.721Rhinopithecus_bieti
ENSGMOG00000018235lsm510094.444ENSRBIG00000030340-9994.444Rhinopithecus_bieti
ENSGMOG00000018235lsm510094.444ENSRROG00000023884-9994.444Rhinopithecus_roxellana
ENSGMOG00000018235lsm510094.444ENSRROG00000004655-9994.444Rhinopithecus_roxellana
ENSGMOG00000018235lsm510094.444ENSRROG00000042782-9896.721Rhinopithecus_roxellana
ENSGMOG00000018235lsm58648.780YER146W-8848.780Saccharomyces_cerevisiae
ENSGMOG00000018235lsm510072.222ENSSBOG00000034794-9972.222Saimiri_boliviensis_boliviensis
ENSGMOG00000018235lsm510094.444ENSSBOG00000012312LSM59994.444Saimiri_boliviensis_boliviensis
ENSGMOG00000018235lsm510092.222ENSSBOG00000019124-9992.222Saimiri_boliviensis_boliviensis
ENSGMOG00000018235lsm510097.778ENSSFOG00015010099lsm59997.778Scleropages_formosus
ENSGMOG00000018235lsm510062.222ENSSMAG00000007895lsm59862.222Scophthalmus_maximus
ENSGMOG00000018235lsm568100.000ENSSDUG00000010762lsm598100.000Seriola_dumerili
ENSGMOG00000018235lsm510098.889ENSSLDG00000025242lsm59998.889Seriola_lalandi_dorsalis
ENSGMOG00000018235lsm58776.923ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSGMOG00000018235lsm510065.556ENSSARG00000003330LSM59965.556Sorex_araneus
ENSGMOG00000018235lsm510092.222ENSSPUG00000002690LSM59895.082Sphenodon_punctatus
ENSGMOG00000018235lsm510061.111ENSSPAG00000005435lsm59861.111Stegastes_partitus
ENSGMOG00000018235lsm57784.058ENSSSCG00000029661-9684.058Sus_scrofa
ENSGMOG00000018235lsm510094.444ENSSSCG00000026064-9994.444Sus_scrofa
ENSGMOG00000018235lsm510093.333ENSTGUG00000017539LSM59993.333Taeniopygia_guttata
ENSGMOG00000018235lsm58690.244ENSTRUG00000017749lsm56490.244Takifugu_rubripes
ENSGMOG00000018235lsm59498.824ENSTNIG00000008695lsm59798.824Tetraodon_nigroviridis
ENSGMOG00000018235lsm510094.444ENSTBEG00000004876LSM59994.444Tupaia_belangeri
ENSGMOG00000018235lsm510094.444ENSTTRG00000004237LSM59994.444Tursiops_truncatus
ENSGMOG00000018235lsm55884.615ENSUAMG00000009786LSM56884.615Ursus_americanus
ENSGMOG00000018235lsm510094.444ENSUMAG00000002625LSM56594.444Ursus_maritimus
ENSGMOG00000018235lsm510094.444ENSVPAG00000009985LSM59994.444Vicugna_pacos
ENSGMOG00000018235lsm510094.444ENSVVUG00000021311LSM59994.444Vulpes_vulpes
ENSGMOG00000018235lsm59193.902ENSXETG00000026465lsm510093.902Xenopus_tropicalis
ENSGMOG00000018235lsm568100.000ENSXCOG00000015348lsm598100.000Xiphophorus_couchianus
ENSGMOG00000018235lsm5100100.000ENSXMAG00000029988lsm599100.000Xiphophorus_maculatus

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