EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000018932 (Gene tree)
Gene ID: -
Gene Symbol: snd1
Alias: SN4TDR|TDRD11|p100L|p100S|wu:fc27g10
Full Name: staphylococcal nuclease and tudor domain containing 1
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 188358 bases
Position: chrGeneScaffold_3659:443256-631613
Accession: ZDB-GENE-030131-3124
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000020355	TUDOR	PF00567.24	2.3e-25	1	1
ENSGMOP00000020355	SNase	PF00565.17	3.6e-27	1	2
ENSGMOP00000020355	SNase	PF00565.17	3.6e-27	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000020855	-	2649	-	ENSGMOP00000020355	882 (aa)	-	UPI00023F49A1

Gene Model

Click here to download ENSGMOG00000018932's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000018932's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000018932	snd1	64	74.859	ENSG00000197157	SND1	64	74.859	Homo_sapiens
ENSGMOG00000018932	snd1	66	84.463	ENSAPOG00000017599	snd1	75	84.463	Acanthochromis_polyacanthus
ENSGMOG00000018932	snd1	66	74.576	ENSAMEG00000004664	SND1	60	74.576	Ailuropoda_melanoleuca
ENSGMOG00000018932	snd1	66	84.181	ENSACIG00000003551	snd1	73	84.181	Amphilophus_citrinellus
ENSGMOG00000018932	snd1	66	83.616	ENSAOCG00000014166	snd1	75	83.616	Amphiprion_ocellaris
ENSGMOG00000018932	snd1	66	83.898	ENSAPEG00000007067	snd1	75	83.898	Amphiprion_percula
ENSGMOG00000018932	snd1	64	82.196	ENSATEG00000018475	snd1	66	82.196	Anabas_testudineus
ENSGMOG00000018932	snd1	57	90.323	ENSANAG00000034463	SND1	55	90.323	Aotus_nancymaae
ENSGMOG00000018932	snd1	66	85.028	ENSACLG00000022897	snd1	75	85.028	Astatotilapia_calliptera
ENSGMOG00000018932	snd1	66	81.921	ENSAMXG00000016318	snd1	64	81.921	Astyanax_mexicanus
ENSGMOG00000018932	snd1	64	74.294	ENSBTAG00000010692	SND1	64	74.294	Bos_taurus
ENSGMOG00000018932	snd1	64	40.608	WBGene00006626	tsn-1	62	41.713	Caenorhabditis_elegans
ENSGMOG00000018932	snd1	64	74.576	ENSCJAG00000017668	SND1	64	74.576	Callithrix_jacchus
ENSGMOG00000018932	snd1	66	74.859	ENSCAFG00000001700	SND1	64	74.859	Canis_familiaris
ENSGMOG00000018932	snd1	66	74.859	ENSCAFG00020021639	SND1	64	74.859	Canis_lupus_dingo
ENSGMOG00000018932	snd1	64	74.294	ENSCHIG00000023390	SND1	66	74.294	Capra_hircus
ENSGMOG00000018932	snd1	55	90.323	ENSCAPG00000010677	SND1	56	90.323	Cavia_aperea
ENSGMOG00000018932	snd1	64	73.446	ENSCPOG00000006251	SND1	64	73.446	Cavia_porcellus
ENSGMOG00000018932	snd1	57	90.323	ENSCCAG00000036847	SND1	55	90.323	Cebus_capucinus
ENSGMOG00000018932	snd1	64	75.141	ENSCATG00000035214	SND1	64	75.141	Cercocebus_atys
ENSGMOG00000018932	snd1	64	74.011	ENSCLAG00000011796	SND1	64	74.011	Chinchilla_lanigera
ENSGMOG00000018932	snd1	64	75.141	ENSCSAG00000010182	SND1	64	75.141	Chlorocebus_sabaeus
ENSGMOG00000018932	snd1	65	74.011	ENSCPBG00000018094	SND1	64	74.011	Chrysemys_picta_bellii
ENSGMOG00000018932	snd1	64	46.218	ENSCING00000000524	-	63	46.218	Ciona_intestinalis
ENSGMOG00000018932	snd1	65	47.324	ENSCSAVG00000008807	-	63	47.324	Ciona_savignyi
ENSGMOG00000018932	snd1	64	75.141	ENSCANG00000035119	SND1	64	75.141	Colobus_angolensis_palliatus
ENSGMOG00000018932	snd1	64	73.446	ENSCGRG00001022514	Snd1	72	73.446	Cricetulus_griseus_chok1gshd
ENSGMOG00000018932	snd1	63	73.446	ENSCGRG00000012277	Snd1	70	73.446	Cricetulus_griseus_crigri
ENSGMOG00000018932	snd1	66	83.333	ENSCSEG00000008661	snd1	75	83.333	Cynoglossus_semilaevis
ENSGMOG00000018932	snd1	66	83.616	ENSCVAG00000010316	snd1	75	83.616	Cyprinodon_variegatus
ENSGMOG00000018932	snd1	60	83.871	ENSDARG00000006766	snd1	69	83.871	Danio_rerio
ENSGMOG00000018932	snd1	63	74.294	ENSDNOG00000006795	SND1	63	74.294	Dasypus_novemcinctus
ENSGMOG00000018932	snd1	55	83.721	ENSDORG00000000336	Snd1	64	74.011	Dipodomys_ordii
ENSGMOG00000018932	snd1	57	67.742	FBgn0035121	Tudor-SN	57	67.742	Drosophila_melanogaster
ENSGMOG00000018932	snd1	55	83.333	ENSETEG00000000375	SND1	55	83.333	Echinops_telfairi
ENSGMOG00000018932	snd1	64	74.859	ENSEASG00005008513	SND1	63	74.859	Equus_asinus_asinus
ENSGMOG00000018932	snd1	64	74.576	ENSECAG00000011451	SND1	64	74.576	Equus_caballus
ENSGMOG00000018932	snd1	64	62.150	ENSEEUG00000014737	SND1	64	60.699	Erinaceus_europaeus
ENSGMOG00000018932	snd1	65	81.586	ENSELUG00000001805	snd1	72	81.586	Esox_lucius
ENSGMOG00000018932	snd1	66	74.294	ENSFCAG00000008289	SND1	64	74.294	Felis_catus
ENSGMOG00000018932	snd1	64	73.729	ENSFDAG00000015881	SND1	64	73.729	Fukomys_damarensis
ENSGMOG00000018932	snd1	62	83.962	ENSFHEG00000004093	snd1	73	83.962	Fundulus_heteroclitus
ENSGMOG00000018932	snd1	66	84.181	ENSGAFG00000008421	snd1	75	84.181	Gambusia_affinis
ENSGMOG00000018932	snd1	56	89.510	ENSGACG00000019793	snd1	55	89.510	Gasterosteus_aculeatus
ENSGMOG00000018932	snd1	64	75.141	ENSGGOG00000009614	SND1	64	75.141	Gorilla_gorilla
ENSGMOG00000018932	snd1	66	84.746	ENSHBUG00000019135	snd1	75	84.746	Haplochromis_burtoni
ENSGMOG00000018932	snd1	64	74.294	ENSHGLG00000003618	SND1	64	74.294	Heterocephalus_glaber_female
ENSGMOG00000018932	snd1	65	74.294	ENSHGLG00100012449	SND1	63	74.294	Heterocephalus_glaber_male
ENSGMOG00000018932	snd1	66	81.638	ENSHCOG00000005266	snd1	75	81.638	Hippocampus_comes
ENSGMOG00000018932	snd1	65	79.096	ENSIPUG00000013279	snd1	74	79.096	Ictalurus_punctatus
ENSGMOG00000018932	snd1	64	74.011	ENSSTOG00000002140	SND1	64	74.011	Ictidomys_tridecemlineatus
ENSGMOG00000018932	snd1	64	74.294	ENSJJAG00000009561	Snd1	64	74.294	Jaculus_jaculus
ENSGMOG00000018932	snd1	66	83.898	ENSKMAG00000016997	snd1	75	83.898	Kryptolebias_marmoratus
ENSGMOG00000018932	snd1	66	84.181	ENSLBEG00000013563	snd1	75	84.181	Labrus_bergylta
ENSGMOG00000018932	snd1	58	93.548	ENSLOCG00000015537	snd1	65	93.548	Lepisosteus_oculatus
ENSGMOG00000018932	snd1	66	75.989	ENSLAFG00000009696	SND1	64	75.989	Loxodonta_africana
ENSGMOG00000018932	snd1	64	75.141	ENSMFAG00000038114	SND1	64	75.141	Macaca_fascicularis
ENSGMOG00000018932	snd1	64	75.141	ENSMMUG00000015432	SND1	64	75.141	Macaca_mulatta
ENSGMOG00000018932	snd1	64	75.141	ENSMNEG00000039808	SND1	64	75.141	Macaca_nemestrina
ENSGMOG00000018932	snd1	64	74.859	ENSMLEG00000029040	SND1	64	74.859	Mandrillus_leucophaeus
ENSGMOG00000018932	snd1	66	83.333	ENSMAMG00000011739	snd1	75	83.333	Mastacembelus_armatus
ENSGMOG00000018932	snd1	66	85.028	ENSMZEG00005005681	snd1	75	85.028	Maylandia_zebra
ENSGMOG00000018932	snd1	64	74.859	ENSMICG00000000097	SND1	64	74.859	Microcebus_murinus
ENSGMOG00000018932	snd1	64	74.576	ENSMOCG00000005040	Snd1	64	74.576	Microtus_ochrogaster
ENSGMOG00000018932	snd1	66	83.898	ENSMMOG00000001795	snd1	75	83.898	Mola_mola
ENSGMOG00000018932	snd1	64	74.294	ENSMODG00000015182	SND1	72	74.294	Monodelphis_domestica
ENSGMOG00000018932	snd1	66	83.616	ENSMALG00000012071	snd1	75	83.616	Monopterus_albus
ENSGMOG00000018932	snd1	64	74.294	MGP_CAROLIEiJ_G0028159	Snd1	64	74.294	Mus_caroli
ENSGMOG00000018932	snd1	64	74.294	ENSMUSG00000001424	Snd1	64	74.294	Mus_musculus
ENSGMOG00000018932	snd1	64	74.294	MGP_PahariEiJ_G0021917	Snd1	64	74.294	Mus_pahari
ENSGMOG00000018932	snd1	64	74.294	MGP_SPRETEiJ_G0029159	Snd1	100	66.355	Mus_spretus
ENSGMOG00000018932	snd1	66	74.011	ENSMPUG00000006545	SND1	64	74.011	Mustela_putorius_furo
ENSGMOG00000018932	snd1	63	72.452	ENSMLUG00000017130	SND1	71	72.452	Myotis_lucifugus
ENSGMOG00000018932	snd1	64	73.729	ENSNGAG00000011186	Snd1	64	73.729	Nannospalax_galili
ENSGMOG00000018932	snd1	66	84.463	ENSNBRG00000006681	snd1	75	84.463	Neolamprologus_brichardi
ENSGMOG00000018932	snd1	66	75.141	ENSNLEG00000012263	SND1	64	75.141	Nomascus_leucogenys
ENSGMOG00000018932	snd1	56	83.333	ENSOPRG00000013405	SND1	56	83.333	Ochotona_princeps
ENSGMOG00000018932	snd1	64	74.011	ENSODEG00000011502	SND1	64	74.011	Octodon_degus
ENSGMOG00000018932	snd1	66	84.746	ENSONIG00000011481	snd1	73	84.746	Oreochromis_niloticus
ENSGMOG00000018932	snd1	63	73.446	ENSOANG00000000817	SND1	69	73.446	Ornithorhynchus_anatinus
ENSGMOG00000018932	snd1	66	74.294	ENSOCUG00000001620	SND1	64	74.294	Oryctolagus_cuniculus
ENSGMOG00000018932	snd1	64	81.921	ENSORLG00000015201	snd1	75	81.921	Oryzias_latipes
ENSGMOG00000018932	snd1	64	82.203	ENSORLG00020013991	snd1	75	82.203	Oryzias_latipes_hni
ENSGMOG00000018932	snd1	64	82.203	ENSORLG00015012436	snd1	75	82.203	Oryzias_latipes_hsok
ENSGMOG00000018932	snd1	66	83.333	ENSOMEG00000006406	snd1	75	83.333	Oryzias_melastigma
ENSGMOG00000018932	snd1	64	75.424	ENSOGAG00000013356	SND1	60	75.424	Otolemur_garnettii
ENSGMOG00000018932	snd1	63	68.644	ENSOARG00000002149	SND1	63	68.644	Ovis_aries
ENSGMOG00000018932	snd1	64	74.859	ENSPPAG00000042947	SND1	64	74.859	Pan_paniscus
ENSGMOG00000018932	snd1	66	74.294	ENSPPRG00000004494	SND1	64	74.294	Panthera_pardus
ENSGMOG00000018932	snd1	66	74.011	ENSPTIG00000014214	SND1	64	74.011	Panthera_tigris_altaica
ENSGMOG00000018932	snd1	64	74.859	ENSPTRG00000023911	SND1	64	74.859	Pan_troglodytes
ENSGMOG00000018932	snd1	63	75.141	ENSPANG00000011997	SND1	63	75.141	Papio_anubis
ENSGMOG00000018932	snd1	64	75.424	ENSPKIG00000023494	snd1	75	75.424	Paramormyrops_kingsleyae
ENSGMOG00000018932	snd1	57	81.875	ENSPMGG00000003629	snd1	72	81.875	Periophthalmus_magnuspinnatus
ENSGMOG00000018932	snd1	64	74.011	ENSPEMG00000010240	Snd1	64	74.011	Peromyscus_maniculatus_bairdii
ENSGMOG00000018932	snd1	57	80.172	ENSPMAG00000007915	-	56	80.172	Petromyzon_marinus
ENSGMOG00000018932	snd1	64	74.576	ENSPCIG00000011561	SND1	68	73.134	Phascolarctos_cinereus
ENSGMOG00000018932	snd1	66	83.616	ENSPFOG00000001557	snd1	75	83.616	Poecilia_formosa
ENSGMOG00000018932	snd1	66	83.616	ENSPLAG00000018459	snd1	73	83.616	Poecilia_latipinna
ENSGMOG00000018932	snd1	66	83.898	ENSPMEG00000006803	snd1	75	83.898	Poecilia_mexicana
ENSGMOG00000018932	snd1	66	82.768	ENSPREG00000002189	snd1	75	82.768	Poecilia_reticulata
ENSGMOG00000018932	snd1	56	83.333	ENSPPYG00000017972	SND1	69	83.333	Pongo_abelii
ENSGMOG00000018932	snd1	64	75.921	ENSPCAG00000011305	SND1	72	75.921	Procavia_capensis
ENSGMOG00000018932	snd1	64	75.141	ENSPCOG00000026791	SND1	64	75.141	Propithecus_coquereli
ENSGMOG00000018932	snd1	64	74.294	ENSPVAG00000013945	SND1	64	74.294	Pteropus_vampyrus
ENSGMOG00000018932	snd1	66	84.746	ENSPNYG00000000932	snd1	75	84.746	Pundamilia_nyererei
ENSGMOG00000018932	snd1	57	93.548	ENSPNAG00000001206	snd1	74	81.356	Pygocentrus_nattereri
ENSGMOG00000018932	snd1	64	74.294	ENSRNOG00000031173	Snd1	64	74.294	Rattus_norvegicus
ENSGMOG00000018932	snd1	64	75.141	ENSRROG00000033020	SND1	64	75.141	Rhinopithecus_roxellana
ENSGMOG00000018932	snd1	57	90.323	ENSSBOG00000032461	SND1	55	90.323	Saimiri_boliviensis_boliviensis
ENSGMOG00000018932	snd1	63	73.729	ENSSHAG00000015359	SND1	63	73.729	Sarcophilus_harrisii
ENSGMOG00000018932	snd1	66	78.249	ENSSFOG00015001103	snd1	75	78.249	Scleropages_formosus
ENSGMOG00000018932	snd1	66	84.181	ENSSMAG00000001932	snd1	71	84.181	Scophthalmus_maximus
ENSGMOG00000018932	snd1	66	82.203	ENSSDUG00000002699	snd1	70	82.203	Seriola_dumerili
ENSGMOG00000018932	snd1	56	90.909	ENSSLDG00000001950	snd1	69	90.909	Seriola_lalandi_dorsalis
ENSGMOG00000018932	snd1	51	70.755	ENSSARG00000004877	SND1	54	70.755	Sorex_araneus
ENSGMOG00000018932	snd1	64	75.141	ENSSSCG00000016590	SND1	64	75.141	Sus_scrofa
ENSGMOG00000018932	snd1	66	82.486	ENSTRUG00000014067	snd1	75	82.486	Takifugu_rubripes
ENSGMOG00000018932	snd1	60	90.323	ENSTNIG00000011019	snd1	69	90.323	Tetraodon_nigroviridis
ENSGMOG00000018932	snd1	59	73.502	ENSTBEG00000003999	SND1	61	73.502	Tupaia_belangeri
ENSGMOG00000018932	snd1	64	73.729	ENSTTRG00000006059	SND1	64	73.729	Tursiops_truncatus
ENSGMOG00000018932	snd1	66	74.576	ENSUMAG00000005960	SND1	64	74.576	Ursus_maritimus
ENSGMOG00000018932	snd1	66	74.859	ENSVVUG00000007226	SND1	64	74.859	Vulpes_vulpes
ENSGMOG00000018932	snd1	62	66.197	ENSXETG00000023043	snd1	70	66.197	Xenopus_tropicalis
ENSGMOG00000018932	snd1	58	75.535	ENSXCOG00000013629	snd1	72	75.535	Xiphophorus_couchianus
ENSGMOG00000018932	snd1	66	83.616	ENSXMAG00000011469	snd1	75	83.616	Xiphophorus_maculatus