EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000018943 (Gene tree)
Gene ID: -
Gene Symbol: a1cf
Alias: acf
Full Name: apobec1 complementation factor
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 25291 bases
Position: chrGeneScaffold_1995:17128-42418
Accession: ZDB-GENE-060824-3
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000020369	DND1_DSRM	PF14709.7	5.7e-26	1	1
ENSGMOP00000020369	RRM_1	PF00076.22	4.7e-40	1	3
ENSGMOP00000020369	RRM_1	PF00076.22	4.7e-40	2	3
ENSGMOP00000020369	RRM_1	PF00076.22	4.7e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000020869	-	1764	-	ENSGMOP00000020369	587 (aa)	-	UPI00023F431C

Gene Model

Click here to download ENSGMOG00000018943's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000018943's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000018943	a1cf	51	66.774	ENSGMOG00000014802	rbm47	50	66.774

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000018943	a1cf	100	72.066	ENSG00000148584	A1CF	100	80.597	Homo_sapiens
ENSGMOG00000018943	a1cf	100	79.483	ENSAPOG00000008259	a1cf	100	80.452	Acanthochromis_polyacanthus
ENSGMOG00000018943	a1cf	100	71.310	ENSAMEG00000000523	A1CF	100	71.736	Ailuropoda_melanoleuca
ENSGMOG00000018943	a1cf	100	75.534	ENSACIG00000008632	a1cf	100	76.683	Amphilophus_citrinellus
ENSGMOG00000018943	a1cf	100	79.070	ENSAOCG00000023744	a1cf	96	84.104	Amphiprion_ocellaris
ENSGMOG00000018943	a1cf	100	79.835	ENSAPEG00000009537	a1cf	100	79.835	Amphiprion_percula
ENSGMOG00000018943	a1cf	100	78.843	ENSATEG00000013720	a1cf	100	80.000	Anabas_testudineus
ENSGMOG00000018943	a1cf	100	70.413	ENSAPLG00000002964	A1CF	100	70.744	Anas_platyrhynchos
ENSGMOG00000018943	a1cf	100	68.709	ENSACAG00000015269	A1CF	100	68.874	Anolis_carolinensis
ENSGMOG00000018943	a1cf	100	71.240	ENSANAG00000019974	A1CF	100	71.240	Aotus_nancymaae
ENSGMOG00000018943	a1cf	100	75.415	ENSACLG00000017428	a1cf	100	77.076	Astatotilapia_calliptera
ENSGMOG00000018943	a1cf	100	75.667	ENSAMXG00000018180	a1cf	100	76.000	Astyanax_mexicanus
ENSGMOG00000018943	a1cf	100	70.462	ENSBTAG00000021195	A1CF	100	71.942	Bos_taurus
ENSGMOG00000018943	a1cf	100	72.231	ENSCJAG00000005045	A1CF	100	72.231	Callithrix_jacchus
ENSGMOG00000018943	a1cf	100	71.642	ENSCAFG00000015581	A1CF	100	72.231	Canis_familiaris
ENSGMOG00000018943	a1cf	100	71.642	ENSCAFG00020026421	A1CF	98	80.872	Canis_lupus_dingo
ENSGMOG00000018943	a1cf	100	71.617	ENSCHIG00000020411	A1CF	100	71.782	Capra_hircus
ENSGMOG00000018943	a1cf	97	70.085	ENSTSYG00000001755	A1CF	100	70.629	Carlito_syrichta
ENSGMOG00000018943	a1cf	86	74.295	ENSCAPG00000017386	A1CF	98	74.295	Cavia_aperea
ENSGMOG00000018943	a1cf	100	71.570	ENSCPOG00000009807	A1CF	100	71.570	Cavia_porcellus
ENSGMOG00000018943	a1cf	100	72.231	ENSCCAG00000018168	A1CF	100	72.231	Cebus_capucinus
ENSGMOG00000018943	a1cf	100	70.413	ENSCATG00000043715	A1CF	100	70.083	Cercocebus_atys
ENSGMOG00000018943	a1cf	100	71.499	ENSCLAG00000010424	A1CF	100	71.287	Chinchilla_lanigera
ENSGMOG00000018943	a1cf	100	71.736	ENSCSAG00000007032	A1CF	100	71.570	Chlorocebus_sabaeus
ENSGMOG00000018943	a1cf	98	68.386	ENSCHOG00000009089	A1CF	98	68.552	Choloepus_hoffmanni
ENSGMOG00000018943	a1cf	100	72.231	ENSCPBG00000026464	A1CF	100	72.231	Chrysemys_picta_bellii
ENSGMOG00000018943	a1cf	100	71.736	ENSCANG00000038032	A1CF	100	71.570	Colobus_angolensis_palliatus
ENSGMOG00000018943	a1cf	100	71.617	ENSCGRG00001017413	A1cf	100	72.112	Cricetulus_griseus_chok1gshd
ENSGMOG00000018943	a1cf	100	70.792	ENSCGRG00000017332	A1cf	100	71.617	Cricetulus_griseus_crigri
ENSGMOG00000018943	a1cf	100	75.410	ENSCSEG00000002361	a1cf	100	76.252	Cynoglossus_semilaevis
ENSGMOG00000018943	a1cf	100	78.347	ENSCVAG00000010520	a1cf	100	80.000	Cyprinodon_variegatus
ENSGMOG00000018943	a1cf	100	74.917	ENSDARG00000002968	a1cf	100	75.748	Danio_rerio
ENSGMOG00000018943	a1cf	100	72.112	ENSDNOG00000002829	A1CF	100	72.277	Dasypus_novemcinctus
ENSGMOG00000018943	a1cf	77	79.710	ENSETEG00000012527	A1CF	77	79.710	Echinops_telfairi
ENSGMOG00000018943	a1cf	100	71.875	ENSEASG00005012924	A1CF	100	72.039	Equus_asinus_asinus
ENSGMOG00000018943	a1cf	100	71.546	ENSECAG00000010424	A1CF	100	71.711	Equus_caballus
ENSGMOG00000018943	a1cf	81	62.815	ENSEEUG00000000013	A1CF	100	62.815	Erinaceus_europaeus
ENSGMOG00000018943	a1cf	100	78.089	ENSELUG00000003159	a1cf	100	78.878	Esox_lucius
ENSGMOG00000018943	a1cf	100	69.983	ENSFCAG00000011179	A1CF	100	70.579	Felis_catus
ENSGMOG00000018943	a1cf	100	70.413	ENSFALG00000013183	A1CF	100	70.744	Ficedula_albicollis
ENSGMOG00000018943	a1cf	100	69.637	ENSFDAG00000019371	A1CF	100	69.637	Fukomys_damarensis
ENSGMOG00000018943	a1cf	100	74.705	ENSFHEG00000019652	a1cf	100	76.391	Fundulus_heteroclitus
ENSGMOG00000018943	a1cf	95	70.486	ENSGALG00000003765	A1CF	97	70.660	Gallus_gallus
ENSGMOG00000018943	a1cf	100	71.429	ENSGAFG00000014868	a1cf	100	72.414	Gambusia_affinis
ENSGMOG00000018943	a1cf	100	81.575	ENSGACG00000010241	a1cf	100	81.910	Gasterosteus_aculeatus
ENSGMOG00000018943	a1cf	96	71.084	ENSGAGG00000016508	A1CF	98	71.084	Gopherus_agassizii
ENSGMOG00000018943	a1cf	100	72.066	ENSGGOG00000009670	A1CF	100	72.066	Gorilla_gorilla
ENSGMOG00000018943	a1cf	100	76.519	ENSHBUG00000021959	a1cf	100	77.833	Haplochromis_burtoni
ENSGMOG00000018943	a1cf	100	71.122	ENSHGLG00000008955	A1CF	100	71.287	Heterocephalus_glaber_female
ENSGMOG00000018943	a1cf	100	70.462	ENSHGLG00100000518	A1CF	100	70.627	Heterocephalus_glaber_male
ENSGMOG00000018943	a1cf	100	69.218	ENSHCOG00000017669	a1cf	100	70.521	Hippocampus_comes
ENSGMOG00000018943	a1cf	89	79.777	ENSIPUG00000010367	a1cf	99	77.620	Ictalurus_punctatus
ENSGMOG00000018943	a1cf	100	77.561	ENSKMAG00000006568	a1cf	100	78.211	Kryptolebias_marmoratus
ENSGMOG00000018943	a1cf	99	78.922	ENSLBEG00000020994	a1cf	99	80.556	Labrus_bergylta
ENSGMOG00000018943	a1cf	100	72.937	ENSLACG00000008061	A1CF	100	72.727	Latimeria_chalumnae
ENSGMOG00000018943	a1cf	100	76.316	ENSLOCG00000006302	a1cf	100	77.190	Lepisosteus_oculatus
ENSGMOG00000018943	a1cf	100	71.782	ENSLAFG00000015462	A1CF	100	72.607	Loxodonta_africana
ENSGMOG00000018943	a1cf	100	70.579	ENSMFAG00000035948	A1CF	100	70.248	Macaca_fascicularis
ENSGMOG00000018943	a1cf	100	70.579	ENSMMUG00000007077	A1CF	100	70.248	Macaca_mulatta
ENSGMOG00000018943	a1cf	100	70.413	ENSMNEG00000031454	A1CF	100	70.083	Macaca_nemestrina
ENSGMOG00000018943	a1cf	100	71.570	ENSMLEG00000037223	A1CF	100	71.405	Mandrillus_leucophaeus
ENSGMOG00000018943	a1cf	100	76.066	ENSMAMG00000010402	a1cf	100	77.377	Mastacembelus_armatus
ENSGMOG00000018943	a1cf	100	76.480	ENSMZEG00005013245	a1cf	100	76.974	Maylandia_zebra
ENSGMOG00000018943	a1cf	100	70.462	ENSMGAG00000001507	A1CF	100	70.627	Meleagris_gallopavo
ENSGMOG00000018943	a1cf	100	71.452	ENSMAUG00000007422	A1cf	100	71.452	Mesocricetus_auratus
ENSGMOG00000018943	a1cf	100	70.279	ENSMICG00000003377	A1CF	100	70.279	Microcebus_murinus
ENSGMOG00000018943	a1cf	100	71.617	ENSMOCG00000021536	A1cf	100	72.158	Microtus_ochrogaster
ENSGMOG00000018943	a1cf	100	69.748	ENSMMOG00000009422	a1cf	100	70.588	Mola_mola
ENSGMOG00000018943	a1cf	89	72.491	ENSMODG00000016478	A1CF	99	71.171	Monodelphis_domestica
ENSGMOG00000018943	a1cf	100	73.090	ENSMALG00000012992	a1cf	95	84.635	Monopterus_albus
ENSGMOG00000018943	a1cf	100	71.452	MGP_CAROLIEiJ_G0022873	A1cf	100	71.452	Mus_caroli
ENSGMOG00000018943	a1cf	100	71.452	ENSMUSG00000052595	A1cf	99	80.537	Mus_musculus
ENSGMOG00000018943	a1cf	100	71.287	MGP_PahariEiJ_G0014366	A1cf	100	71.122	Mus_pahari
ENSGMOG00000018943	a1cf	100	71.026	MGP_SPRETEiJ_G0023792	A1cf	100	71.026	Mus_spretus
ENSGMOG00000018943	a1cf	100	66.446	ENSMPUG00000016971	A1CF	100	66.777	Mustela_putorius_furo
ENSGMOG00000018943	a1cf	100	70.792	ENSMLUG00000016071	A1CF	100	71.782	Myotis_lucifugus
ENSGMOG00000018943	a1cf	100	72.277	ENSNGAG00000015136	A1cf	100	72.277	Nannospalax_galili
ENSGMOG00000018943	a1cf	100	76.190	ENSNBRG00000001712	a1cf	100	77.504	Neolamprologus_brichardi
ENSGMOG00000018943	a1cf	100	72.277	ENSNLEG00000012028	A1CF	100	72.277	Nomascus_leucogenys
ENSGMOG00000018943	a1cf	94	69.930	ENSMEUG00000015909	A1CF	100	69.755	Notamacropus_eugenii
ENSGMOG00000018943	a1cf	89	62.804	ENSOPRG00000010667	A1CF	100	61.691	Ochotona_princeps
ENSGMOG00000018943	a1cf	100	76.105	ENSONIG00000019105	a1cf	100	77.504	Oreochromis_niloticus
ENSGMOG00000018943	a1cf	79	71.008	ENSOANG00000007360	A1CF	99	71.008	Ornithorhynchus_anatinus
ENSGMOG00000018943	a1cf	100	70.346	ENSOCUG00000011587	A1CF	100	70.840	Oryctolagus_cuniculus
ENSGMOG00000018943	a1cf	100	76.733	ENSORLG00000013342	a1cf	100	76.568	Oryzias_latipes
ENSGMOG00000018943	a1cf	100	77.941	ENSORLG00020000586	a1cf	100	77.941	Oryzias_latipes_hni
ENSGMOG00000018943	a1cf	100	77.941	ENSORLG00015018569	a1cf	100	77.941	Oryzias_latipes_hsok
ENSGMOG00000018943	a1cf	100	75.862	ENSOMEG00000013531	a1cf	100	75.862	Oryzias_melastigma
ENSGMOG00000018943	a1cf	100	70.579	ENSOGAG00000012884	A1CF	100	70.909	Otolemur_garnettii
ENSGMOG00000018943	a1cf	100	71.287	ENSOARG00000013695	A1CF	100	71.452	Ovis_aries
ENSGMOG00000018943	a1cf	97	70.869	ENSPPAG00000028115	A1CF	99	74.155	Pan_paniscus
ENSGMOG00000018943	a1cf	100	71.476	ENSPPRG00000012180	A1CF	100	72.066	Panthera_pardus
ENSGMOG00000018943	a1cf	100	71.476	ENSPTIG00000021223	A1CF	100	72.066	Panthera_tigris_altaica
ENSGMOG00000018943	a1cf	100	71.901	ENSPTRG00000002508	A1CF	100	71.901	Pan_troglodytes
ENSGMOG00000018943	a1cf	100	70.579	ENSPANG00000021988	A1CF	100	70.248	Papio_anubis
ENSGMOG00000018943	a1cf	100	77.100	ENSPKIG00000025176	a1cf	100	76.898	Paramormyrops_kingsleyae
ENSGMOG00000018943	a1cf	100	70.744	ENSPSIG00000010318	A1CF	100	70.248	Pelodiscus_sinensis
ENSGMOG00000018943	a1cf	98	67.742	ENSPMGG00000013359	a1cf	99	68.136	Periophthalmus_magnuspinnatus
ENSGMOG00000018943	a1cf	100	72.112	ENSPEMG00000015021	A1cf	100	72.112	Peromyscus_maniculatus_bairdii
ENSGMOG00000018943	a1cf	100	70.248	ENSPCIG00000002175	A1CF	100	70.579	Phascolarctos_cinereus
ENSGMOG00000018943	a1cf	100	78.339	ENSPFOG00000006683	a1cf	100	79.479	Poecilia_formosa
ENSGMOG00000018943	a1cf	100	78.339	ENSPFOG00000007437	-	100	79.479	Poecilia_formosa
ENSGMOG00000018943	a1cf	100	77.011	ENSPLAG00000000026	a1cf	100	78.654	Poecilia_latipinna
ENSGMOG00000018943	a1cf	100	77.011	ENSPLAG00000001210	-	100	78.654	Poecilia_latipinna
ENSGMOG00000018943	a1cf	100	70.847	ENSPMEG00000015529	-	100	71.987	Poecilia_mexicana
ENSGMOG00000018943	a1cf	100	69.622	ENSPMEG00000000921	a1cf	100	71.264	Poecilia_mexicana
ENSGMOG00000018943	a1cf	100	78.502	ENSPREG00000016298	a1cf	100	79.479	Poecilia_reticulata
ENSGMOG00000018943	a1cf	100	71.287	ENSPPYG00000002819	A1CF	100	71.287	Pongo_abelii
ENSGMOG00000018943	a1cf	81	55.487	ENSPCAG00000006463	A1CF	79	55.487	Procavia_capensis
ENSGMOG00000018943	a1cf	100	71.664	ENSPCOG00000024172	A1CF	100	71.829	Propithecus_coquereli
ENSGMOG00000018943	a1cf	100	77.398	ENSPNYG00000017944	a1cf	100	78.374	Pundamilia_nyererei
ENSGMOG00000018943	a1cf	100	76.596	ENSPNAG00000007704	a1cf	100	76.557	Pygocentrus_nattereri
ENSGMOG00000018943	a1cf	100	70.462	ENSRNOG00000033195	A1cf	100	70.462	Rattus_norvegicus
ENSGMOG00000018943	a1cf	100	68.739	ENSRBIG00000042892	A1CF	100	69.482	Rhinopithecus_bieti
ENSGMOG00000018943	a1cf	100	71.736	ENSRROG00000041398	A1CF	100	71.570	Rhinopithecus_roxellana
ENSGMOG00000018943	a1cf	100	72.185	ENSSBOG00000021930	A1CF	100	72.185	Saimiri_boliviensis_boliviensis
ENSGMOG00000018943	a1cf	100	70.579	ENSSHAG00000005096	A1CF	100	70.744	Sarcophilus_harrisii
ENSGMOG00000018943	a1cf	100	75.902	ENSSFOG00015011774	a1cf	100	75.902	Scleropages_formosus
ENSGMOG00000018943	a1cf	100	78.571	ENSSMAG00000013271	a1cf	100	78.896	Scophthalmus_maximus
ENSGMOG00000018943	a1cf	100	78.678	ENSSDUG00000013930	a1cf	100	79.174	Seriola_dumerili
ENSGMOG00000018943	a1cf	100	72.951	ENSSLDG00000004290	a1cf	100	74.545	Seriola_lalandi_dorsalis
ENSGMOG00000018943	a1cf	95	62.847	ENSSARG00000005940	A1CF	95	62.326	Sorex_araneus
ENSGMOG00000018943	a1cf	95	70.660	ENSSPUG00000006797	A1CF	95	70.660	Sphenodon_punctatus
ENSGMOG00000018943	a1cf	100	72.442	ENSSSCG00000010431	A1CF	100	72.607	Sus_scrofa
ENSGMOG00000018943	a1cf	100	71.875	ENSTGUG00000005090	A1CF	100	72.039	Taeniopygia_guttata
ENSGMOG00000018943	a1cf	100	76.384	ENSTRUG00000001982	a1cf	100	76.672	Takifugu_rubripes
ENSGMOG00000018943	a1cf	100	75.285	ENSTNIG00000003580	a1cf	100	75.447	Tetraodon_nigroviridis
ENSGMOG00000018943	a1cf	97	65.476	ENSTTRG00000013190	A1CF	95	65.646	Tursiops_truncatus
ENSGMOG00000018943	a1cf	100	70.248	ENSUAMG00000020065	A1CF	100	70.248	Ursus_americanus
ENSGMOG00000018943	a1cf	100	71.405	ENSUMAG00000011162	A1CF	100	71.570	Ursus_maritimus
ENSGMOG00000018943	a1cf	89	68.421	ENSVPAG00000006130	A1CF	86	68.421	Vicugna_pacos
ENSGMOG00000018943	a1cf	100	70.579	ENSVVUG00000002504	A1CF	100	70.744	Vulpes_vulpes
ENSGMOG00000018943	a1cf	100	67.887	ENSXETG00000006611	a1cf	100	67.667	Xenopus_tropicalis
ENSGMOG00000018943	a1cf	100	77.833	ENSXCOG00000003302	a1cf	100	78.982	Xiphophorus_couchianus
ENSGMOG00000018943	a1cf	100	79.016	ENSXMAG00000016703	a1cf	100	80.164	Xiphophorus_maculatus