EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000019077 (Gene tree)
Gene ID: -
Gene Symbol: smg6
Alias: si:dkey-16f21.2
Full Name: SMG6 nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Minus strand
Length: 29933 bases
Position: chrGeneScaffold_4327:499-30431
Accession: ZDB-GENE-081107-52
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000020534	EST1	PF10374.9	4.5e-09	1	1
ENSGMOP00000020534	EST1_DNA_bind	PF10373.9	5.4e-29	1	2
ENSGMOP00000020534	EST1_DNA_bind	PF10373.9	5.4e-29	2	2
ENSGMOP00000020534	PIN_4	PF13638.6	5e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000021036	-	3807	-	ENSGMOP00000020534	1268 (aa)	-	UPI00023F4364

Gene Model

Click here to download ENSGMOG00000019077's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000019077's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000019077	smg6	68	69.626	ENSG00000070366	SMG6	100	52.852	Homo_sapiens
ENSGMOG00000019077	smg6	58	69.159	ENSAMEG00000007632	SMG6	53	69.159	Ailuropoda_melanoleuca
ENSGMOG00000019077	smg6	58	78.947	ENSACIG00000012997	smg6	50	78.947	Amphilophus_citrinellus
ENSGMOG00000019077	smg6	68	69.159	ENSANAG00000035760	SMG6	53	69.159	Aotus_nancymaae
ENSGMOG00000019077	smg6	58	78.947	ENSACLG00000005288	smg6	50	78.947	Astatotilapia_calliptera
ENSGMOG00000019077	smg6	58	76.077	ENSAMXG00000017326	smg6	53	76.077	Astyanax_mexicanus
ENSGMOG00000019077	smg6	68	69.159	ENSBTAG00000000267	SMG6	53	69.159	Bos_taurus
ENSGMOG00000019077	smg6	68	69.159	ENSCJAG00000001820	SMG6	53	69.159	Callithrix_jacchus
ENSGMOG00000019077	smg6	58	69.159	ENSCAFG00000019260	SMG6	53	69.159	Canis_familiaris
ENSGMOG00000019077	smg6	58	69.159	ENSCAFG00020009770	SMG6	53	69.159	Canis_lupus_dingo
ENSGMOG00000019077	smg6	58	69.626	ENSCHIG00000021998	SMG6	53	69.626	Capra_hircus
ENSGMOG00000019077	smg6	58	68.545	ENSTSYG00000003406	SMG6	100	52.471	Carlito_syrichta
ENSGMOG00000019077	smg6	68	65.581	ENSCPOG00000014878	SMG6	83	57.416	Cavia_porcellus
ENSGMOG00000019077	smg6	68	69.626	ENSCCAG00000035801	SMG6	53	69.626	Cebus_capucinus
ENSGMOG00000019077	smg6	68	69.159	ENSCATG00000031956	SMG6	61	69.159	Cercocebus_atys
ENSGMOG00000019077	smg6	68	67.757	ENSCLAG00000006748	SMG6	83	56.938	Chinchilla_lanigera
ENSGMOG00000019077	smg6	68	69.159	ENSCSAG00000013800	SMG6	53	69.159	Chlorocebus_sabaeus
ENSGMOG00000019077	smg6	68	66.509	ENSCPBG00000020369	SMG6	52	66.509	Chrysemys_picta_bellii
ENSGMOG00000019077	smg6	68	69.159	ENSCANG00000031764	SMG6	100	52.852	Colobus_angolensis_palliatus
ENSGMOG00000019077	smg6	58	64.789	ENSCGRG00000007782	Smg6	53	64.789	Cricetulus_griseus_crigri
ENSGMOG00000019077	smg6	58	67.757	ENSDNOG00000048283	SMG6	53	67.757	Dasypus_novemcinctus
ENSGMOG00000019077	smg6	67	54.479	ENSDORG00000016614	Smg6	84	57.143	Dipodomys_ordii
ENSGMOG00000019077	smg6	58	68.692	ENSEASG00005009318	SMG6	52	68.692	Equus_asinus_asinus
ENSGMOG00000019077	smg6	58	68.224	ENSECAG00000006519	SMG6	52	68.224	Equus_caballus
ENSGMOG00000019077	smg6	68	69.159	ENSFCAG00000028817	SMG6	53	69.159	Felis_catus
ENSGMOG00000019077	smg6	67	67.453	ENSFALG00000006538	SMG6	63	67.453	Ficedula_albicollis
ENSGMOG00000019077	smg6	58	68.224	ENSFDAG00000015106	SMG6	83	57.416	Fukomys_damarensis
ENSGMOG00000019077	smg6	68	66.981	ENSGALG00000003108	SMG6	60	66.981	Gallus_gallus
ENSGMOG00000019077	smg6	67	76.555	ENSGACG00000020521	smg6	68	76.555	Gasterosteus_aculeatus
ENSGMOG00000019077	smg6	58	66.509	ENSGAGG00000025617	SMG6	53	66.509	Gopherus_agassizii
ENSGMOG00000019077	smg6	68	69.626	ENSGGOG00000017156	SMG6	53	69.626	Gorilla_gorilla
ENSGMOG00000019077	smg6	58	68.692	ENSHGLG00000012882	SMG6	83	56.938	Heterocephalus_glaber_female
ENSGMOG00000019077	smg6	68	68.692	ENSHGLG00100017815	SMG6	83	56.938	Heterocephalus_glaber_male
ENSGMOG00000019077	smg6	58	73.113	ENSHCOG00000008761	smg6	63	73.113	Hippocampus_comes
ENSGMOG00000019077	smg6	58	68.224	ENSSTOG00000028127	SMG6	83	57.416	Ictidomys_tridecemlineatus
ENSGMOG00000019077	smg6	58	72.897	ENSLOCG00000006448	smg6	55	72.897	Lepisosteus_oculatus
ENSGMOG00000019077	smg6	58	67.757	ENSLAFG00000001261	SMG6	53	67.757	Loxodonta_africana
ENSGMOG00000019077	smg6	68	69.159	ENSMFAG00000003394	SMG6	53	69.159	Macaca_fascicularis
ENSGMOG00000019077	smg6	68	69.159	ENSMMUG00000023161	SMG6	53	69.159	Macaca_mulatta
ENSGMOG00000019077	smg6	68	69.159	ENSMNEG00000044592	SMG6	54	69.159	Macaca_nemestrina
ENSGMOG00000019077	smg6	68	69.159	ENSMLEG00000029353	SMG6	66	69.159	Mandrillus_leucophaeus
ENSGMOG00000019077	smg6	58	78.947	ENSMAMG00000020119	smg6	50	78.947	Mastacembelus_armatus
ENSGMOG00000019077	smg6	68	69.159	ENSMICG00000012913	SMG6	53	69.159	Microcebus_murinus
ENSGMOG00000019077	smg6	58	67.136	ENSMODG00000010622	SMG6	53	67.136	Monodelphis_domestica
ENSGMOG00000019077	smg6	58	68.224	MGP_CAROLIEiJ_G0016729	Smg6	83	56.459	Mus_caroli
ENSGMOG00000019077	smg6	58	68.224	ENSMUSG00000038290	Smg6	83	56.459	Mus_musculus
ENSGMOG00000019077	smg6	58	68.224	MGP_PahariEiJ_G0017866	Smg6	83	56.459	Mus_pahari
ENSGMOG00000019077	smg6	58	68.224	MGP_SPRETEiJ_G0017572	Smg6	83	56.459	Mus_spretus
ENSGMOG00000019077	smg6	58	69.159	ENSMPUG00000013046	SMG6	53	69.159	Mustela_putorius_furo
ENSGMOG00000019077	smg6	68	68.224	ENSMLUG00000005739	SMG6	53	68.224	Myotis_lucifugus
ENSGMOG00000019077	smg6	68	67.757	ENSNGAG00000007287	Smg6	83	57.895	Nannospalax_galili
ENSGMOG00000019077	smg6	58	78.947	ENSNBRG00000009511	smg6	50	75.814	Neolamprologus_brichardi
ENSGMOG00000019077	smg6	68	68.692	ENSNLEG00000017171	SMG6	100	52.852	Nomascus_leucogenys
ENSGMOG00000019077	smg6	58	62.441	ENSMEUG00000015804	SMG6	54	62.441	Notamacropus_eugenii
ENSGMOG00000019077	smg6	63	59.211	ENSODEG00000008038	SMG6	80	50.000	Octodon_degus
ENSGMOG00000019077	smg6	67	78.947	ENSONIG00000005594	smg6	62	78.947	Oreochromis_niloticus
ENSGMOG00000019077	smg6	68	68.692	ENSOCUG00000013018	SMG6	53	68.692	Oryctolagus_cuniculus
ENSGMOG00000019077	smg6	68	69.159	ENSOGAG00000004483	SMG6	61	69.159	Otolemur_garnettii
ENSGMOG00000019077	smg6	68	69.626	ENSOARG00000015076	SMG6	54	69.626	Ovis_aries
ENSGMOG00000019077	smg6	68	69.159	ENSPPAG00000043296	SMG6	53	69.159	Pan_paniscus
ENSGMOG00000019077	smg6	68	69.159	ENSPPRG00000014581	SMG6	53	69.159	Panthera_pardus
ENSGMOG00000019077	smg6	68	69.159	ENSPTIG00000008925	SMG6	100	52.662	Panthera_tigris_altaica
ENSGMOG00000019077	smg6	68	69.626	ENSPTRG00000008544	SMG6	100	52.852	Pan_troglodytes
ENSGMOG00000019077	smg6	68	69.159	ENSPANG00000024588	SMG6	61	69.159	Papio_anubis
ENSGMOG00000019077	smg6	51	90.323	ENSPMGG00000000844	smg6	53	75.238	Periophthalmus_magnuspinnatus
ENSGMOG00000019077	smg6	58	68.224	ENSPEMG00000020707	Smg6	84	56.938	Peromyscus_maniculatus_bairdii
ENSGMOG00000019077	smg6	67	72.000	ENSPFOG00000012035	smg6	62	72.000	Poecilia_formosa
ENSGMOG00000019077	smg6	68	61.860	ENSPPYG00000007790	SMG6	53	61.860	Pongo_abelii
ENSGMOG00000019077	smg6	64	69.118	ENSPCAG00000000552	SMG6	52	67.757	Procavia_capensis
ENSGMOG00000019077	smg6	68	69.159	ENSPCOG00000020925	SMG6	53	69.159	Propithecus_coquereli
ENSGMOG00000019077	smg6	58	54.479	ENSPVAG00000002159	SMG6	53	54.479	Pteropus_vampyrus
ENSGMOG00000019077	smg6	58	78.947	ENSPNYG00000024151	smg6	50	75.814	Pundamilia_nyererei
ENSGMOG00000019077	smg6	58	68.224	ENSRNOG00000003041	Smg6	60	68.224	Rattus_norvegicus
ENSGMOG00000019077	smg6	68	69.159	ENSRBIG00000024746	SMG6	61	69.159	Rhinopithecus_bieti
ENSGMOG00000019077	smg6	68	69.159	ENSRROG00000030423	SMG6	100	52.852	Rhinopithecus_roxellana
ENSGMOG00000019077	smg6	68	66.822	ENSSHAG00000010045	SMG6	53	66.822	Sarcophilus_harrisii
ENSGMOG00000019077	smg6	68	66.509	ENSSPUG00000007152	SMG6	62	66.509	Sphenodon_punctatus
ENSGMOG00000019077	smg6	68	69.159	ENSSSCG00000017826	SMG6	53	69.159	Sus_scrofa
ENSGMOG00000019077	smg6	67	66.822	ENSTGUG00000005836	SMG6	53	66.822	Taeniopygia_guttata
ENSGMOG00000019077	smg6	58	77.512	ENSTRUG00000000358	smg6	51	77.512	Takifugu_rubripes
ENSGMOG00000019077	smg6	67	76.077	ENSTNIG00000016164	smg6	61	76.077	Tetraodon_nigroviridis
ENSGMOG00000019077	smg6	68	69.626	ENSTBEG00000011424	SMG6	53	69.626	Tupaia_belangeri
ENSGMOG00000019077	smg6	58	69.159	ENSUAMG00000025152	SMG6	54	69.159	Ursus_americanus
ENSGMOG00000019077	smg6	58	69.159	ENSUMAG00000009306	SMG6	54	69.159	Ursus_maritimus
ENSGMOG00000019077	smg6	58	69.159	ENSVVUG00000021727	SMG6	55	69.159	Vulpes_vulpes
ENSGMOG00000019077	smg6	58	66.355	ENSXETG00000023799	SMG6	55	66.355	Xenopus_tropicalis