EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSGMOG00000019213 (Gene tree)
Gene ID: -
Gene Symbol: rnpc3
Alias: caliban|clbn|zgc:136847
Full Name: RNA-binding region (RNP1%2C RRM) containing 3
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 16052 bases
Position: chrGeneScaffold_544:330834-346885
Accession: ZDB-GENE-060312-35
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000020676	RRM_1	PF00076.22	3.6e-14	1	2
ENSGMOP00000020676	RRM_1	PF00076.22	3.6e-14	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000021182	-	1455	-	ENSGMOP00000020676	484 (aa)	-	UPI00023F452F

Gene Model

Click here to download ENSGMOG00000019213's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000019213's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000019213	rnpc3	96	53.012	ENSG00000185946	RNPC3	96	54.815	Homo_sapiens
ENSGMOG00000019213	rnpc3	99	70.553	ENSAPOG00000017371	rnpc3	100	70.809	Acanthochromis_polyacanthus
ENSGMOG00000019213	rnpc3	95	53.307	ENSAMEG00000001694	RNPC3	94	54.728	Ailuropoda_melanoleuca
ENSGMOG00000019213	rnpc3	98	64.229	ENSACIG00000021043	rnpc3	99	64.497	Amphilophus_citrinellus
ENSGMOG00000019213	rnpc3	99	68.665	ENSAOCG00000014052	rnpc3	99	68.919	Amphiprion_ocellaris
ENSGMOG00000019213	rnpc3	99	68.665	ENSAPEG00000008739	rnpc3	99	68.919	Amphiprion_percula
ENSGMOG00000019213	rnpc3	99	67.181	ENSATEG00000021263	rnpc3	100	67.437	Anabas_testudineus
ENSGMOG00000019213	rnpc3	87	55.457	ENSAPLG00000015605	RNPC3	98	54.628	Anas_platyrhynchos
ENSGMOG00000019213	rnpc3	95	55.372	ENSACAG00000002029	RNPC3	96	53.971	Anolis_carolinensis
ENSGMOG00000019213	rnpc3	96	52.610	ENSANAG00000019950	RNPC3	95	53.400	Aotus_nancymaae
ENSGMOG00000019213	rnpc3	99	68.390	ENSACLG00000014702	rnpc3	100	68.849	Astatotilapia_calliptera
ENSGMOG00000019213	rnpc3	99	63.458	ENSAMXG00000033372	rnpc3	99	64.118	Astyanax_mexicanus
ENSGMOG00000019213	rnpc3	95	53.333	ENSBTAG00000019091	RNPC3	95	54.200	Bos_taurus
ENSGMOG00000019213	rnpc3	96	54.115	ENSCJAG00000035686	RNPC3	94	55.350	Callithrix_jacchus
ENSGMOG00000019213	rnpc3	95	53.213	ENSCAFG00000019972	RNPC3	94	54.747	Canis_familiaris
ENSGMOG00000019213	rnpc3	95	53.213	ENSCAFG00020011300	RNPC3	94	54.747	Canis_lupus_dingo
ENSGMOG00000019213	rnpc3	95	53.737	ENSCHIG00000020361	RNPC3	95	53.600	Capra_hircus
ENSGMOG00000019213	rnpc3	95	52.323	ENSTSYG00000030256	RNPC3	95	53.000	Carlito_syrichta
ENSGMOG00000019213	rnpc3	84	47.489	ENSCAPG00000013600	RNPC3	97	47.222	Cavia_aperea
ENSGMOG00000019213	rnpc3	95	51.587	ENSCPOG00000031638	RNPC3	95	52.894	Cavia_porcellus
ENSGMOG00000019213	rnpc3	96	52.811	ENSCCAG00000024301	RNPC3	95	53.600	Cebus_capucinus
ENSGMOG00000019213	rnpc3	96	42.430	ENSCATG00000035930	-	95	42.363	Cercocebus_atys
ENSGMOG00000019213	rnpc3	96	53.213	ENSCATG00000002086	RNPC3	94	54.000	Cercocebus_atys
ENSGMOG00000019213	rnpc3	95	51.703	ENSCLAG00000005169	RNPC3	95	53.955	Chinchilla_lanigera
ENSGMOG00000019213	rnpc3	96	52.906	ENSCSAG00000001519	RNPC3	94	53.800	Chlorocebus_sabaeus
ENSGMOG00000019213	rnpc3	96	54.564	ENSCPBG00000028311	RNPC3	95	54.747	Chrysemys_picta_bellii
ENSGMOG00000019213	rnpc3	94	38.155	ENSCING00000021276	-	99	38.622	Ciona_intestinalis
ENSGMOG00000019213	rnpc3	93	37.391	ENSCSAVG00000002800	-	99	37.391	Ciona_savignyi
ENSGMOG00000019213	rnpc3	96	52.610	ENSCANG00000031444	RNPC3	94	53.400	Colobus_angolensis_palliatus
ENSGMOG00000019213	rnpc3	95	52.953	ENSCGRG00001019276	Rnpc3	95	54.418	Cricetulus_griseus_chok1gshd
ENSGMOG00000019213	rnpc3	87	50.552	ENSCGRG00000000053	Rnpc3	99	52.174	Cricetulus_griseus_crigri
ENSGMOG00000019213	rnpc3	99	66.398	ENSCSEG00000013475	rnpc3	99	66.466	Cynoglossus_semilaevis
ENSGMOG00000019213	rnpc3	99	68.023	ENSCVAG00000002645	rnpc3	100	67.829	Cyprinodon_variegatus
ENSGMOG00000019213	rnpc3	98	63.294	ENSDARG00000011247	rnpc3	99	64.356	Danio_rerio
ENSGMOG00000019213	rnpc3	95	52.121	ENSDNOG00000044555	-	95	53.119	Dasypus_novemcinctus
ENSGMOG00000019213	rnpc3	95	52.525	ENSDNOG00000047498	-	95	53.521	Dasypus_novemcinctus
ENSGMOG00000019213	rnpc3	96	53.644	ENSDORG00000027343	Rnpc3	95	54.435	Dipodomys_ordii
ENSGMOG00000019213	rnpc3	99	47.358	ENSEBUG00000002068	rnpc3	99	45.951	Eptatretus_burgeri
ENSGMOG00000019213	rnpc3	95	53.644	ENSEASG00005015957	RNPC3	94	55.110	Equus_asinus_asinus
ENSGMOG00000019213	rnpc3	95	53.441	ENSECAG00000021148	RNPC3	94	54.910	Equus_caballus
ENSGMOG00000019213	rnpc3	98	67.754	ENSELUG00000002264	rnpc3	99	67.304	Esox_lucius
ENSGMOG00000019213	rnpc3	95	53.333	ENSFCAG00000024312	RNPC3	94	54.200	Felis_catus
ENSGMOG00000019213	rnpc3	87	54.324	ENSFALG00000002580	RNPC3	99	54.808	Ficedula_albicollis
ENSGMOG00000019213	rnpc3	95	53.360	ENSFDAG00000019948	RNPC3	95	53.036	Fukomys_damarensis
ENSGMOG00000019213	rnpc3	99	63.984	ENSFHEG00000020647	rnpc3	100	64.444	Fundulus_heteroclitus
ENSGMOG00000019213	rnpc3	96	55.061	ENSGALG00000005162	RNPC3	89	53.550	Gallus_gallus
ENSGMOG00000019213	rnpc3	99	66.145	ENSGAFG00000017236	rnpc3	100	66.797	Gambusia_affinis
ENSGMOG00000019213	rnpc3	99	67.319	ENSGACG00000002048	rnpc3	100	67.500	Gasterosteus_aculeatus
ENSGMOG00000019213	rnpc3	96	55.131	ENSGAGG00000008438	RNPC3	95	54.910	Gopherus_agassizii
ENSGMOG00000019213	rnpc3	97	48.548	ENSGGOG00000026201	-	95	49.587	Gorilla_gorilla
ENSGMOG00000019213	rnpc3	81	75.000	ENSHBUG00000015966	rnpc3	84	75.000	Haplochromis_burtoni
ENSGMOG00000019213	rnpc3	95	52.846	ENSHGLG00000001708	RNPC3	95	55.020	Heterocephalus_glaber_female
ENSGMOG00000019213	rnpc3	95	52.846	ENSHGLG00100003005	RNPC3	95	55.020	Heterocephalus_glaber_male
ENSGMOG00000019213	rnpc3	99	63.834	ENSHCOG00000017135	rnpc3	99	64.892	Hippocampus_comes
ENSGMOG00000019213	rnpc3	99	64.950	ENSIPUG00000002916	rnpc3	99	64.625	Ictalurus_punctatus
ENSGMOG00000019213	rnpc3	95	52.846	ENSSTOG00000025020	RNPC3	95	53.955	Ictidomys_tridecemlineatus
ENSGMOG00000019213	rnpc3	95	52.761	ENSJJAG00000010203	Rnpc3	95	54.158	Jaculus_jaculus
ENSGMOG00000019213	rnpc3	98	71.255	ENSKMAG00000017358	rnpc3	99	71.313	Kryptolebias_marmoratus
ENSGMOG00000019213	rnpc3	99	69.455	ENSLBEG00000024901	rnpc3	99	69.515	Labrus_bergylta
ENSGMOG00000019213	rnpc3	99	56.496	ENSLACG00000005720	RNPC3	92	57.480	Latimeria_chalumnae
ENSGMOG00000019213	rnpc3	98	60.913	ENSLOCG00000007986	rnpc3	99	61.584	Lepisosteus_oculatus
ENSGMOG00000019213	rnpc3	95	53.144	ENSLAFG00000032342	RNPC3	95	53.924	Loxodonta_africana
ENSGMOG00000019213	rnpc3	96	44.444	ENSMFAG00000002917	-	94	43.789	Macaca_fascicularis
ENSGMOG00000019213	rnpc3	96	53.213	ENSMFAG00000002004	RNPC3	94	54.000	Macaca_fascicularis
ENSGMOG00000019213	rnpc3	96	53.213	ENSMMUG00000018039	RNPC3	94	54.000	Macaca_mulatta
ENSGMOG00000019213	rnpc3	78	55.122	ENSMMUG00000002098	-	83	55.122	Macaca_mulatta
ENSGMOG00000019213	rnpc3	96	43.041	ENSMNEG00000029209	-	94	42.737	Macaca_nemestrina
ENSGMOG00000019213	rnpc3	96	50.201	ENSMNEG00000033950	RNPC3	94	51.000	Macaca_nemestrina
ENSGMOG00000019213	rnpc3	96	44.872	ENSMLEG00000034644	-	95	45.223	Mandrillus_leucophaeus
ENSGMOG00000019213	rnpc3	96	53.213	ENSMLEG00000033628	RNPC3	94	54.000	Mandrillus_leucophaeus
ENSGMOG00000019213	rnpc3	99	62.035	ENSMAMG00000007496	rnpc3	100	62.695	Mastacembelus_armatus
ENSGMOG00000019213	rnpc3	99	66.157	ENSMZEG00005020233	rnpc3	99	66.862	Maylandia_zebra
ENSGMOG00000019213	rnpc3	87	53.728	ENSMGAG00000006381	RNPC3	99	53.728	Meleagris_gallopavo
ENSGMOG00000019213	rnpc3	95	53.673	ENSMAUG00000001358	Rnpc3	95	55.131	Mesocricetus_auratus
ENSGMOG00000019213	rnpc3	95	53.333	ENSMICG00000029591	RNPC3	95	53.924	Microcebus_murinus
ENSGMOG00000019213	rnpc3	95	52.749	ENSMOCG00000013423	Rnpc3	94	54.217	Microtus_ochrogaster
ENSGMOG00000019213	rnpc3	99	66.805	ENSMMOG00000005309	rnpc3	100	68.257	Mola_mola
ENSGMOG00000019213	rnpc3	96	52.525	ENSMODG00000002946	RNPC3	96	53.984	Monodelphis_domestica
ENSGMOG00000019213	rnpc3	98	61.373	ENSMALG00000015471	rnpc3	99	62.622	Monopterus_albus
ENSGMOG00000019213	rnpc3	95	53.893	MGP_CAROLIEiJ_G0025555	Rnpc3	96	54.970	Mus_caroli
ENSGMOG00000019213	rnpc3	95	53.469	ENSMUSG00000027981	Rnpc3	99	52.991	Mus_musculus
ENSGMOG00000019213	rnpc3	95	53.265	MGP_PahariEiJ_G0027001	Rnpc3	96	54.343	Mus_pahari
ENSGMOG00000019213	rnpc3	95	52.918	MGP_SPRETEiJ_G0026505	Rnpc3	96	54.545	Mus_spretus
ENSGMOG00000019213	rnpc3	95	52.505	ENSMPUG00000007349	RNPC3	94	54.839	Mustela_putorius_furo
ENSGMOG00000019213	rnpc3	94	53.579	ENSMLUG00000028743	RNPC3	93	54.990	Myotis_lucifugus
ENSGMOG00000019213	rnpc3	95	52.941	ENSNGAG00000010939	Rnpc3	95	53.815	Nannospalax_galili
ENSGMOG00000019213	rnpc3	99	68.849	ENSNBRG00000012196	rnpc3	97	69.307	Neolamprologus_brichardi
ENSGMOG00000019213	rnpc3	96	52.811	ENSNLEG00000012013	RNPC3	95	53.600	Nomascus_leucogenys
ENSGMOG00000019213	rnpc3	95	53.386	ENSODEG00000007612	RNPC3	95	53.521	Octodon_degus
ENSGMOG00000019213	rnpc3	99	67.636	ENSONIG00000004770	rnpc3	100	69.715	Oreochromis_niloticus
ENSGMOG00000019213	rnpc3	91	53.040	ENSOANG00000008220	RNPC3	100	54.334	Ornithorhynchus_anatinus
ENSGMOG00000019213	rnpc3	95	53.939	ENSOCUG00000004016	RNPC3	95	54.527	Oryctolagus_cuniculus
ENSGMOG00000019213	rnpc3	99	67.857	ENSORLG00000005694	rnpc3	100	67.857	Oryzias_latipes
ENSGMOG00000019213	rnpc3	99	68.254	ENSORLG00020005513	rnpc3	100	67.659	Oryzias_latipes_hni
ENSGMOG00000019213	rnpc3	99	67.857	ENSORLG00015002179	rnpc3	100	67.262	Oryzias_latipes_hsok
ENSGMOG00000019213	rnpc3	98	68.737	ENSOMEG00000017737	rnpc3	99	68.663	Oryzias_melastigma
ENSGMOG00000019213	rnpc3	95	53.131	ENSOGAG00000026182	RNPC3	95	53.908	Otolemur_garnettii
ENSGMOG00000019213	rnpc3	95	53.939	ENSOARG00000018719	RNPC3	95	53.800	Ovis_aries
ENSGMOG00000019213	rnpc3	96	53.106	ENSPPAG00000037459	RNPC3	95	53.892	Pan_paniscus
ENSGMOG00000019213	rnpc3	97	49.380	ENSPPAG00000030278	-	95	50.620	Pan_paniscus
ENSGMOG00000019213	rnpc3	95	53.768	ENSPPRG00000020246	RNPC3	94	54.637	Panthera_pardus
ENSGMOG00000019213	rnpc3	95	53.768	ENSPTIG00000009887	RNPC3	96	54.637	Panthera_tigris_altaica
ENSGMOG00000019213	rnpc3	95	48.842	ENSPTRG00000044227	-	95	50.105	Pan_troglodytes
ENSGMOG00000019213	rnpc3	96	53.012	ENSPTRG00000033902	RNPC3	95	53.800	Pan_troglodytes
ENSGMOG00000019213	rnpc3	96	45.833	ENSPANG00000029957	-	96	45.342	Papio_anubis
ENSGMOG00000019213	rnpc3	96	53.012	ENSPANG00000012137	RNPC3	94	53.800	Papio_anubis
ENSGMOG00000019213	rnpc3	99	60.624	ENSPKIG00000008828	rnpc3	99	62.257	Paramormyrops_kingsleyae
ENSGMOG00000019213	rnpc3	63	50.152	ENSPSIG00000007396	RNPC3	99	50.152	Pelodiscus_sinensis
ENSGMOG00000019213	rnpc3	95	63.975	ENSPMGG00000011742	rnpc3	96	65.844	Periophthalmus_magnuspinnatus
ENSGMOG00000019213	rnpc3	88	50.435	ENSPEMG00000020112	Rnpc3	99	52.070	Peromyscus_maniculatus_bairdii
ENSGMOG00000019213	rnpc3	97	44.886	ENSPMAG00000003778	rnpc3	98	45.333	Petromyzon_marinus
ENSGMOG00000019213	rnpc3	95	53.469	ENSPCIG00000004415	-	96	54.326	Phascolarctos_cinereus
ENSGMOG00000019213	rnpc3	97	67.665	ENSPFOG00000009895	rnpc3	98	68.127	Poecilia_formosa
ENSGMOG00000019213	rnpc3	97	67.864	ENSPLAG00000012023	rnpc3	98	68.327	Poecilia_latipinna
ENSGMOG00000019213	rnpc3	99	66.992	ENSPMEG00000003663	rnpc3	98	68.327	Poecilia_mexicana
ENSGMOG00000019213	rnpc3	99	66.601	ENSPREG00000010206	rnpc3	100	67.059	Poecilia_reticulata
ENSGMOG00000019213	rnpc3	79	48.309	ENSPPYG00000001102	RNPC3	93	49.519	Pongo_abelii
ENSGMOG00000019213	rnpc3	99	68.390	ENSPNYG00000020603	rnpc3	100	68.849	Pundamilia_nyererei
ENSGMOG00000019213	rnpc3	99	55.992	ENSPNAG00000000524	rnpc3	92	55.750	Pygocentrus_nattereri
ENSGMOG00000019213	rnpc3	95	52.846	ENSRNOG00000017310	Rnpc3	95	53.722	Rattus_norvegicus
ENSGMOG00000019213	rnpc3	96	49.299	ENSRBIG00000043897	RNPC3	94	50.100	Rhinopithecus_bieti
ENSGMOG00000019213	rnpc3	96	53.012	ENSRROG00000032334	RNPC3	94	53.800	Rhinopithecus_roxellana
ENSGMOG00000019213	rnpc3	96	52.410	ENSSBOG00000024473	RNPC3	95	53.200	Saimiri_boliviensis_boliviensis
ENSGMOG00000019213	rnpc3	96	54.092	ENSSHAG00000011859	RNPC3	96	53.254	Sarcophilus_harrisii
ENSGMOG00000019213	rnpc3	99	64.497	ENSSFOG00015013055	rnpc3	99	66.667	Scleropages_formosus
ENSGMOG00000019213	rnpc3	99	65.830	ENSSMAG00000020346	rnpc3	100	66.988	Scophthalmus_maximus
ENSGMOG00000019213	rnpc3	99	68.798	ENSSDUG00000006600	rnpc3	100	69.052	Seriola_dumerili
ENSGMOG00000019213	rnpc3	99	69.186	ENSSLDG00000007979	rnpc3	100	69.246	Seriola_lalandi_dorsalis
ENSGMOG00000019213	rnpc3	96	52.174	ENSSPUG00000003872	-	93	51.959	Sphenodon_punctatus
ENSGMOG00000019213	rnpc3	95	55.876	ENSSPUG00000008539	-	93	55.804	Sphenodon_punctatus
ENSGMOG00000019213	rnpc3	97	72.371	ENSSPAG00000005633	rnpc3	98	73.045	Stegastes_partitus
ENSGMOG00000019213	rnpc3	95	54.175	ENSSSCG00000037254	RNPC3	95	55.152	Sus_scrofa
ENSGMOG00000019213	rnpc3	87	55.357	ENSTGUG00000004795	-	99	53.571	Taeniopygia_guttata
ENSGMOG00000019213	rnpc3	99	67.262	ENSTNIG00000018963	rnpc3	99	67.525	Tetraodon_nigroviridis
ENSGMOG00000019213	rnpc3	95	53.971	ENSUMAG00000007775	RNPC3	96	54.839	Ursus_maritimus
ENSGMOG00000019213	rnpc3	95	53.213	ENSVVUG00000000331	RNPC3	94	54.747	Vulpes_vulpes
ENSGMOG00000019213	rnpc3	94	47.107	ENSXETG00000025027	rnpc3	95	45.473	Xenopus_tropicalis
ENSGMOG00000019213	rnpc3	99	65.039	ENSXCOG00000005013	rnpc3	100	66.862	Xiphophorus_couchianus
ENSGMOG00000019213	rnpc3	99	65.949	ENSXMAG00000006495	rnpc3	100	66.602	Xiphophorus_maculatus