EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSGMOG00000019615 (Gene tree)
Gene ID: -
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Gadus_morhua
Status: putative
Strand: Plus strand
Length: 2978 bases
Position: chrGeneScaffold_427:857923-860900
Accession: ZDB-GENE-060721-2
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSGMOP00000021098	Smg4_UPF3	PF03467.15	2.8e-52	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSGMOT00000021612	-	978	-	ENSGMOP00000021098	326 (aa)	-	UPI00023F4626

Gene Model

Click here to download ENSGMOG00000019615's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSGMOG00000019615's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSGMOG00000019615	upf3a	50	69.512	ENSGMOG00000001621	upf3b	72	51.603

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSGMOG00000019615	upf3a	100	60.119	ENSG00000169062	UPF3A	70	60.119	Homo_sapiens
ENSGMOG00000019615	upf3a	100	60.947	ENSAMEG00000004259	UPF3A	73	60.947	Ailuropoda_melanoleuca
ENSGMOG00000019615	upf3a	52	66.864	ENSACIG00000013582	upf3b	60	55.556	Amphilophus_citrinellus
ENSGMOG00000019615	upf3a	100	80.368	ENSATEG00000005843	upf3a	69	80.368	Anabas_testudineus
ENSGMOG00000019615	upf3a	99	65.476	ENSACAG00000001540	UPF3A	80	64.776	Anolis_carolinensis
ENSGMOG00000019615	upf3a	100	58.187	ENSANAG00000021713	UPF3A	70	57.310	Aotus_nancymaae
ENSGMOG00000019615	upf3a	98	58.841	ENSCJAG00000019102	UPF3A	68	58.841	Callithrix_jacchus
ENSGMOG00000019615	upf3a	100	60.465	ENSCAFG00000006504	UPF3A	71	60.465	Canis_familiaris
ENSGMOG00000019615	upf3a	100	60.756	ENSCAFG00020014268	UPF3A	69	60.756	Canis_lupus_dingo
ENSGMOG00000019615	upf3a	100	56.250	ENSCHIG00000008682	UPF3A	66	56.250	Capra_hircus
ENSGMOG00000019615	upf3a	85	60.424	ENSTSYG00000001918	UPF3A	74	60.424	Carlito_syrichta
ENSGMOG00000019615	upf3a	97	53.541	ENSCPOG00000006824	UPF3A	75	53.541	Cavia_porcellus
ENSGMOG00000019615	upf3a	100	59.226	ENSCCAG00000018406	UPF3A	70	59.226	Cebus_capucinus
ENSGMOG00000019615	upf3a	100	61.468	ENSCATG00000029733	UPF3A	69	61.162	Cercocebus_atys
ENSGMOG00000019615	upf3a	100	61.094	ENSCSAG00000017388	UPF3A	69	60.909	Chlorocebus_sabaeus
ENSGMOG00000019615	upf3a	52	46.429	ENSCING00000008396	-	86	51.095	Ciona_intestinalis
ENSGMOG00000019615	upf3a	99	61.012	ENSCGRG00001017387	Upf3a	74	60.542	Cricetulus_griseus_chok1gshd
ENSGMOG00000019615	upf3a	99	61.012	ENSCGRG00000001468	Upf3a	75	59.941	Cricetulus_griseus_crigri
ENSGMOG00000019615	upf3a	100	80.061	ENSCSEG00000005106	upf3a	70	80.061	Cynoglossus_semilaevis
ENSGMOG00000019615	upf3a	100	76.807	ENSCVAG00000022333	upf3a	69	77.812	Cyprinodon_variegatus
ENSGMOG00000019615	upf3a	100	75.375	ENSDARG00000069297	upf3a	71	76.074	Danio_rerio
ENSGMOG00000019615	upf3a	100	64.793	ENSDNOG00000034391	UPF3A	75	64.793	Dasypus_novemcinctus
ENSGMOG00000019615	upf3a	100	54.867	ENSETEG00000010110	UPF3A	69	55.030	Echinops_telfairi
ENSGMOG00000019615	upf3a	100	61.834	ENSEASG00005021884	UPF3A	69	61.834	Equus_asinus_asinus
ENSGMOG00000019615	upf3a	100	61.834	ENSECAG00000017141	UPF3A	69	62.426	Equus_caballus
ENSGMOG00000019615	upf3a	100	79.141	ENSELUG00000011050	upf3a	69	79.141	Esox_lucius
ENSGMOG00000019615	upf3a	100	61.062	ENSFCAG00000014602	UPF3A	69	60.465	Felis_catus
ENSGMOG00000019615	upf3a	100	85.061	ENSGACG00000001972	upf3a	100	85.061	Gasterosteus_aculeatus
ENSGMOG00000019615	upf3a	63	70.732	ENSGACG00000017435	upf3b	57	70.513	Gasterosteus_aculeatus
ENSGMOG00000019615	upf3a	100	47.706	ENSGGOG00000041219	-	72	49.847	Gorilla_gorilla
ENSGMOG00000019615	upf3a	100	49.847	ENSGGOG00000043074	-	68	49.847	Gorilla_gorilla
ENSGMOG00000019615	upf3a	100	60.119	ENSGGOG00000015428	UPF3A	70	60.119	Gorilla_gorilla
ENSGMOG00000019615	upf3a	98	56.098	ENSHGLG00000001544	UPF3A	74	55.183	Heterocephalus_glaber_female
ENSGMOG00000019615	upf3a	98	56.098	ENSHGLG00100013244	UPF3A	74	55.183	Heterocephalus_glaber_male
ENSGMOG00000019615	upf3a	100	73.371	ENSIPUG00000023450	upf3a	70	76.074	Ictalurus_punctatus
ENSGMOG00000019615	upf3a	100	77.745	ENSKMAG00000004381	upf3a	69	79.755	Kryptolebias_marmoratus
ENSGMOG00000019615	upf3a	50	93.865	ENSLBEG00000021570	upf3a	69	71.779	Labrus_bergylta
ENSGMOG00000019615	upf3a	68	37.410	ENSLACG00000006645	UPF3A	73	36.691	Latimeria_chalumnae
ENSGMOG00000019615	upf3a	100	72.093	ENSLOCG00000002665	upf3a	71	72.093	Lepisosteus_oculatus
ENSGMOG00000019615	upf3a	50	79.755	ENSMFAG00000045016	UPF3A	69	59.939	Macaca_fascicularis
ENSGMOG00000019615	upf3a	52	58.989	ENSMFAG00000045275	-	79	58.434	Macaca_fascicularis
ENSGMOG00000019615	upf3a	52	58.101	ENSMMUG00000046682	-	81	57.831	Macaca_mulatta
ENSGMOG00000019615	upf3a	99	61.656	ENSMMUG00000007449	UPF3A	71	61.350	Macaca_mulatta
ENSGMOG00000019615	upf3a	52	58.427	ENSMNEG00000040898	-	79	57.831	Macaca_nemestrina
ENSGMOG00000019615	upf3a	100	61.774	ENSMNEG00000036402	UPF3A	67	61.468	Macaca_nemestrina
ENSGMOG00000019615	upf3a	100	61.162	ENSMLEG00000014726	UPF3A	76	60.856	Mandrillus_leucophaeus
ENSGMOG00000019615	upf3a	100	75.568	ENSMAMG00000018364	upf3a	67	78.834	Mastacembelus_armatus
ENSGMOG00000019615	upf3a	94	65.204	ENSMGAG00000014837	UPF3A	78	64.596	Meleagris_gallopavo
ENSGMOG00000019615	upf3a	66	78.140	ENSMOCG00000000550	Upf3a	60	78.140	Microtus_ochrogaster
ENSGMOG00000019615	upf3a	100	64.985	ENSMODG00000003159	UPF3A	78	64.985	Monodelphis_domestica
ENSGMOG00000019615	upf3a	100	59.531	MGP_CAROLIEiJ_G0030848	Upf3a	75	60.000	Mus_caroli
ENSGMOG00000019615	upf3a	100	60.597	ENSMUSG00000038398	Upf3a	76	61.493	Mus_musculus
ENSGMOG00000019615	upf3a	100	60.241	MGP_PahariEiJ_G0021311	Upf3a	76	60.237	Mus_pahari
ENSGMOG00000019615	upf3a	100	60.597	MGP_SPRETEiJ_G0031958	Upf3a	76	61.493	Mus_spretus
ENSGMOG00000019615	upf3a	100	60.597	ENSMPUG00000009139	UPF3A	68	60.597	Mustela_putorius_furo
ENSGMOG00000019615	upf3a	99	61.111	ENSMLUG00000015905	UPF3A	80	61.290	Myotis_lucifugus
ENSGMOG00000019615	upf3a	100	60.856	ENSNGAG00000019314	Upf3a	76	60.856	Nannospalax_galili
ENSGMOG00000019615	upf3a	99	60.000	ENSNLEG00000007563	UPF3A	69	59.821	Nomascus_leucogenys
ENSGMOG00000019615	upf3a	52	58.580	ENSNLEG00000027516	-	74	57.962	Nomascus_leucogenys
ENSGMOG00000019615	upf3a	54	54.696	ENSODEG00000007164	-	66	55.000	Octodon_degus
ENSGMOG00000019615	upf3a	52	57.647	ENSODEG00000006064	-	79	57.962	Octodon_degus
ENSGMOG00000019615	upf3a	99	53.061	ENSOANG00000006985	-	85	54.354	Ornithorhynchus_anatinus
ENSGMOG00000019615	upf3a	100	75.000	ENSORLG00000010911	upf3a	69	77.341	Oryzias_latipes
ENSGMOG00000019615	upf3a	99	73.429	ENSORLG00020014317	upf3a	69	75.758	Oryzias_latipes_hni
ENSGMOG00000019615	upf3a	99	77.744	ENSOMEG00000014425	upf3a	69	77.301	Oryzias_melastigma
ENSGMOG00000019615	upf3a	99	61.012	ENSOGAG00000004788	UPF3A	79	61.012	Otolemur_garnettii
ENSGMOG00000019615	upf3a	100	58.824	ENSOARG00000009004	UPF3A	70	58.824	Ovis_aries
ENSGMOG00000019615	upf3a	100	59.226	ENSPPAG00000042267	UPF3A	70	59.226	Pan_paniscus
ENSGMOG00000019615	upf3a	100	60.767	ENSPPRG00000025062	UPF3A	69	60.767	Panthera_pardus
ENSGMOG00000019615	upf3a	100	59.524	ENSPTRG00000006073	UPF3A	70	59.701	Pan_troglodytes
ENSGMOG00000019615	upf3a	97	47.095	ENSPTRG00000051640	-	71	46.951	Pan_troglodytes
ENSGMOG00000019615	upf3a	100	47.619	ENSPTRG00000041187	-	73	48.214	Pan_troglodytes
ENSGMOG00000019615	upf3a	100	45.833	ENSPTRG00000041835	-	72	47.095	Pan_troglodytes
ENSGMOG00000019615	upf3a	100	61.774	ENSPANG00000004346	UPF3A	69	61.468	Papio_anubis
ENSGMOG00000019615	upf3a	52	58.427	ENSPANG00000029350	-	80	57.831	Papio_anubis
ENSGMOG00000019615	upf3a	93	55.229	ENSPKIG00000019226	upf3b	67	76.923	Paramormyrops_kingsleyae
ENSGMOG00000019615	upf3a	100	68.222	ENSPKIG00000004422	upf3a	73	71.045	Paramormyrops_kingsleyae
ENSGMOG00000019615	upf3a	100	64.412	ENSPSIG00000007468	UPF3A	81	65.282	Pelodiscus_sinensis
ENSGMOG00000019615	upf3a	100	61.562	ENSPEMG00000019968	-	76	61.562	Peromyscus_maniculatus_bairdii
ENSGMOG00000019615	upf3a	100	55.000	ENSPCIG00000019590	-	62	81.818	Phascolarctos_cinereus
ENSGMOG00000019615	upf3a	100	80.488	ENSPFOG00000013222	upf3a	69	80.488	Poecilia_formosa
ENSGMOG00000019615	upf3a	100	74.233	ENSPLAG00000011960	upf3a	70	77.711	Poecilia_latipinna
ENSGMOG00000019615	upf3a	100	74.251	ENSPMEG00000000836	upf3a	66	78.313	Poecilia_mexicana
ENSGMOG00000019615	upf3a	100	59.821	ENSPPYG00000005536	UPF3A	70	59.821	Pongo_abelii
ENSGMOG00000019615	upf3a	99	59.701	ENSPVAG00000005656	UPF3A	69	59.940	Pteropus_vampyrus
ENSGMOG00000019615	upf3a	100	75.284	ENSPNAG00000019532	upf3a	70	78.528	Pygocentrus_nattereri
ENSGMOG00000019615	upf3a	96	47.790	ENSPNAG00000021528	upf3b	52	72.436	Pygocentrus_nattereri
ENSGMOG00000019615	upf3a	100	60.241	ENSRNOG00000017397	Upf3a	78	60.736	Rattus_norvegicus
ENSGMOG00000019615	upf3a	99	61.231	ENSRBIG00000034007	UPF3A	73	60.923	Rhinopithecus_bieti
ENSGMOG00000019615	upf3a	99	61.350	ENSRROG00000012212	UPF3A	68	61.043	Rhinopithecus_roxellana
ENSGMOG00000019615	upf3a	89	56.187	ENSSBOG00000029989	UPF3A	67	56.187	Saimiri_boliviensis_boliviensis
ENSGMOG00000019615	upf3a	100	65.282	ENSSHAG00000009895	UPF3A	79	65.282	Sarcophilus_harrisii
ENSGMOG00000019615	upf3a	100	72.289	ENSSFOG00015021851	upf3a	69	72.289	Scleropages_formosus
ENSGMOG00000019615	upf3a	90	56.954	ENSSMAG00000012913	upf3b	51	72.436	Scophthalmus_maximus
ENSGMOG00000019615	upf3a	70	95.031	ENSSDUG00000009680	upf3a	63	92.157	Seriola_dumerili
ENSGMOG00000019615	upf3a	99	50.888	ENSSARG00000007262	UPF3A	80	49.709	Sorex_araneus
ENSGMOG00000019615	upf3a	100	56.936	ENSSSCG00000024679	UPF3A	52	77.674	Sus_scrofa
ENSGMOG00000019615	upf3a	100	67.062	ENSTGUG00000009493	UPF3A	84	65.282	Taeniopygia_guttata
ENSGMOG00000019615	upf3a	100	72.365	ENSTRUG00000012730	upf3a	70	74.545	Takifugu_rubripes
ENSGMOG00000019615	upf3a	100	61.111	ENSTNIG00000014973	upf3a	82	63.855	Tetraodon_nigroviridis
ENSGMOG00000019615	upf3a	89	52.145	ENSTBEG00000017186	-	93	52.824	Tupaia_belangeri
ENSGMOG00000019615	upf3a	89	57.096	ENSTTRG00000015414	UPF3A	62	57.096	Tursiops_truncatus
ENSGMOG00000019615	upf3a	99	58.309	ENSVPAG00000003525	UPF3A	82	58.309	Vicugna_pacos
ENSGMOG00000019615	upf3a	100	59.302	ENSVVUG00000013538	UPF3A	67	59.302	Vulpes_vulpes
ENSGMOG00000019615	upf3a	100	52.381	ENSXETG00000002572	upf3a	77	50.693	Xenopus_tropicalis
ENSGMOG00000019615	upf3a	50	68.902	ENSXETG00000007440	upf3b	68	71.795	Xenopus_tropicalis
ENSGMOG00000019615	upf3a	100	73.780	ENSXCOG00000018591	upf3a	68	63.284	Xiphophorus_couchianus
ENSGMOG00000019615	upf3a	100	74.251	ENSXMAG00000013452	upf3a	69	79.141	Xiphophorus_maculatus