EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000000562 (Gene tree)
Gene ID: 102301694
Gene Symbol: prpf4
Alias: mg:ab03a02|zgc:65943
Full Name: pre-mRNA processing factor 4
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 7297 bases
Position: chrJH425665.1:453366-460662
Accession: 102301694
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000032633	PRP4	PF08799.11	2.4e-14	1	1
ENSHBUP00000017020	PRP4	PF08799.11	2.6e-14	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000025691	-	1920	XM_005942564	ENSHBUP00000017020	510 (aa)	XP_005942626	UPI0003BDA9BE
ENSHBUT00000025715	-	1997	-	ENSHBUP00000032633	483 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000000562's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000000562's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000000562	prpf4	58	31.687	ENSHBUG00000011872	tbl3	90	31.687
ENSHBUG00000000562	prpf4	55	35.484	ENSHBUG00000012552	wdr5	89	35.484

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000000562	prpf4	99	76.786	ENSG00000136875	PRPF4	96	76.786	Homo_sapiens
ENSHBUG00000000562	prpf4	100	93.996	ENSAPOG00000014132	prpf4	99	93.996	Acanthochromis_polyacanthus
ENSHBUG00000000562	prpf4	99	76.786	ENSAMEG00000013048	PRPF4	94	76.786	Ailuropoda_melanoleuca
ENSHBUG00000000562	prpf4	100	96.471	ENSACIG00000005579	prpf4	100	96.471	Amphilophus_citrinellus
ENSHBUG00000000562	prpf4	100	94.314	ENSAOCG00000005457	prpf4	100	94.314	Amphiprion_ocellaris
ENSHBUG00000000562	prpf4	100	94.118	ENSAPEG00000000776	prpf4	100	94.118	Amphiprion_percula
ENSHBUG00000000562	prpf4	100	94.617	ENSATEG00000023013	prpf4	100	94.510	Anabas_testudineus
ENSHBUG00000000562	prpf4	99	76.726	ENSAPLG00000006534	PRPF4	94	76.726	Anas_platyrhynchos
ENSHBUG00000000562	prpf4	99	74.755	ENSACAG00000015110	PRPF4	98	74.755	Anolis_carolinensis
ENSHBUG00000000562	prpf4	99	76.786	ENSANAG00000022464	PRPF4	93	76.786	Aotus_nancymaae
ENSHBUG00000000562	prpf4	100	99.608	ENSACLG00000019031	prpf4	100	99.608	Astatotilapia_calliptera
ENSHBUG00000000562	prpf4	100	61.787	ENSAMXG00000006756	prpf4	100	73.333	Astyanax_mexicanus
ENSHBUG00000000562	prpf4	99	76.786	ENSBTAG00000004571	PRPF4	96	76.786	Bos_taurus
ENSHBUG00000000562	prpf4	93	43.681	WBGene00007972	prp-4	96	44.211	Caenorhabditis_elegans
ENSHBUG00000000562	prpf4	99	76.786	ENSCJAG00000017856	PRPF4	96	76.786	Callithrix_jacchus
ENSHBUG00000000562	prpf4	99	76.786	ENSCAFG00000003224	PRPF4	93	76.786	Canis_familiaris
ENSHBUG00000000562	prpf4	99	76.786	ENSCAFG00020022637	PRPF4	97	76.786	Canis_lupus_dingo
ENSHBUG00000000562	prpf4	99	76.786	ENSCHIG00000024648	-	96	76.786	Capra_hircus
ENSHBUG00000000562	prpf4	99	76.984	ENSTSYG00000010366	PRPF4	96	76.984	Carlito_syrichta
ENSHBUG00000000562	prpf4	90	69.212	ENSCAPG00000008935	PRPF4	97	69.212	Cavia_aperea
ENSHBUG00000000562	prpf4	99	71.429	ENSCPOG00000014729	-	96	71.429	Cavia_porcellus
ENSHBUG00000000562	prpf4	99	76.389	ENSCPOG00000010747	-	96	76.389	Cavia_porcellus
ENSHBUG00000000562	prpf4	99	76.587	ENSCCAG00000028990	PRPF4	96	76.587	Cebus_capucinus
ENSHBUG00000000562	prpf4	99	76.786	ENSCATG00000021552	PRPF4	96	76.786	Cercocebus_atys
ENSHBUG00000000562	prpf4	99	76.786	ENSCLAG00000013448	PRPF4	96	76.786	Chinchilla_lanigera
ENSHBUG00000000562	prpf4	89	76.549	ENSCHOG00000007233	PRPF4	100	76.706	Choloepus_hoffmanni
ENSHBUG00000000562	prpf4	100	75.569	ENSCPBG00000019136	PRPF4	73	75.937	Chrysemys_picta_bellii
ENSHBUG00000000562	prpf4	100	58.509	ENSCING00000001299	-	100	58.509	Ciona_intestinalis
ENSHBUG00000000562	prpf4	98	58.218	ENSCSAVG00000009178	-	99	59.957	Ciona_savignyi
ENSHBUG00000000562	prpf4	99	76.786	ENSCANG00000003246	PRPF4	96	76.786	Colobus_angolensis_palliatus
ENSHBUG00000000562	prpf4	99	76.587	ENSCGRG00001016992	Prpf4	96	76.587	Cricetulus_griseus_chok1gshd
ENSHBUG00000000562	prpf4	99	76.587	ENSCGRG00000017560	Prpf4	96	76.587	Cricetulus_griseus_crigri
ENSHBUG00000000562	prpf4	100	87.647	ENSCSEG00000020451	prpf4	100	87.647	Cynoglossus_semilaevis
ENSHBUG00000000562	prpf4	100	79.804	ENSDARG00000067639	prpf4	100	79.804	Danio_rerio
ENSHBUG00000000562	prpf4	99	76.730	ENSDNOG00000013203	PRPF4	96	76.730	Dasypus_novemcinctus
ENSHBUG00000000562	prpf4	99	77.183	ENSDORG00000026275	Prpf4	96	77.183	Dipodomys_ordii
ENSHBUG00000000562	prpf4	100	49.715	FBgn0036733	U4-U6-60K	99	50.454	Drosophila_melanogaster
ENSHBUG00000000562	prpf4	99	77.381	ENSETEG00000020389	PRPF4	96	77.381	Echinops_telfairi
ENSHBUG00000000562	prpf4	99	68.315	ENSEBUG00000015229	prpf4	88	68.989	Eptatretus_burgeri
ENSHBUG00000000562	prpf4	99	76.786	ENSEASG00005022678	PRPF4	96	76.786	Equus_asinus_asinus
ENSHBUG00000000562	prpf4	99	76.786	ENSECAG00000007072	PRPF4	96	76.786	Equus_caballus
ENSHBUG00000000562	prpf4	98	60.682	ENSEEUG00000007480	PRPF4	96	60.682	Erinaceus_europaeus
ENSHBUG00000000562	prpf4	100	80.588	ENSELUG00000007510	prpf4	100	80.588	Esox_lucius
ENSHBUG00000000562	prpf4	99	76.786	ENSFCAG00000005514	PRPF4	96	76.786	Felis_catus
ENSHBUG00000000562	prpf4	99	76.072	ENSFALG00000005423	PRPF4	85	76.072	Ficedula_albicollis
ENSHBUG00000000562	prpf4	99	76.786	ENSFDAG00000005839	PRPF4	96	76.786	Fukomys_damarensis
ENSHBUG00000000562	prpf4	100	92.745	ENSFHEG00000001300	prpf4	100	92.745	Fundulus_heteroclitus
ENSHBUG00000000562	prpf4	99	76.529	ENSGALG00000008857	PRPF4	94	76.529	Gallus_gallus
ENSHBUG00000000562	prpf4	96	90.274	ENSGAFG00000012164	prpf4	68	90.274	Gambusia_affinis
ENSHBUG00000000562	prpf4	100	81.445	ENSGACG00000015476	prpf4	100	81.250	Gasterosteus_aculeatus
ENSHBUG00000000562	prpf4	99	75.542	ENSGAGG00000025029	PRPF4	94	75.542	Gopherus_agassizii
ENSHBUG00000000562	prpf4	99	76.786	ENSGGOG00000006943	PRPF4	96	76.786	Gorilla_gorilla
ENSHBUG00000000562	prpf4	99	62.302	ENSHGLG00000003838	-	96	62.302	Heterocephalus_glaber_female
ENSHBUG00000000562	prpf4	95	66.053	ENSHGLG00000016628	-	95	66.462	Heterocephalus_glaber_female
ENSHBUG00000000562	prpf4	99	76.984	ENSHGLG00000015191	PRPF4	96	76.984	Heterocephalus_glaber_female
ENSHBUG00000000562	prpf4	99	62.302	ENSHGLG00100005571	-	96	62.302	Heterocephalus_glaber_male
ENSHBUG00000000562	prpf4	100	78.468	ENSIPUG00000017956	PRPF4	100	78.431	Ictalurus_punctatus
ENSHBUG00000000562	prpf4	99	76.786	ENSSTOG00000027833	PRPF4	96	76.786	Ictidomys_tridecemlineatus
ENSHBUG00000000562	prpf4	99	76.786	ENSJJAG00000008838	Prpf4	96	76.786	Jaculus_jaculus
ENSHBUG00000000562	prpf4	100	91.765	ENSKMAG00000013236	prpf4	100	91.765	Kryptolebias_marmoratus
ENSHBUG00000000562	prpf4	100	93.529	ENSLBEG00000020611	prpf4	100	93.529	Labrus_bergylta
ENSHBUG00000000562	prpf4	100	72.070	ENSLACG00000016317	PRPF4	97	72.070	Latimeria_chalumnae
ENSHBUG00000000562	prpf4	100	81.373	ENSLOCG00000000581	prpf4	100	81.373	Lepisosteus_oculatus
ENSHBUG00000000562	prpf4	99	76.786	ENSLAFG00000018225	PRPF4	96	76.786	Loxodonta_africana
ENSHBUG00000000562	prpf4	99	76.587	ENSMFAG00000039397	PRPF4	96	76.587	Macaca_fascicularis
ENSHBUG00000000562	prpf4	99	76.786	ENSMMUG00000005844	PRPF4	96	76.786	Macaca_mulatta
ENSHBUG00000000562	prpf4	99	68.056	ENSMNEG00000033737	PRPF4	96	68.056	Macaca_nemestrina
ENSHBUG00000000562	prpf4	99	76.786	ENSMLEG00000040284	PRPF4	96	76.786	Mandrillus_leucophaeus
ENSHBUG00000000562	prpf4	100	94.118	ENSMAMG00000020141	prpf4	100	94.118	Mastacembelus_armatus
ENSHBUG00000000562	prpf4	100	99.608	ENSMZEG00005023205	prpf4	100	99.608	Maylandia_zebra
ENSHBUG00000000562	prpf4	99	75.937	ENSMGAG00000001796	PRPF4	94	75.937	Meleagris_gallopavo
ENSHBUG00000000562	prpf4	99	76.587	ENSMAUG00000018022	Prpf4	96	76.587	Mesocricetus_auratus
ENSHBUG00000000562	prpf4	99	76.228	ENSMICG00000015022	PRPF4	97	76.228	Microcebus_murinus
ENSHBUG00000000562	prpf4	99	76.587	ENSMOCG00000018273	Prpf4	96	76.587	Microtus_ochrogaster
ENSHBUG00000000562	prpf4	100	91.176	ENSMMOG00000021177	prpf4	100	91.176	Mola_mola
ENSHBUG00000000562	prpf4	99	75.148	ENSMODG00000025096	-	94	75.148	Monodelphis_domestica
ENSHBUG00000000562	prpf4	99	75.740	ENSMODG00000004444	-	97	75.740	Monodelphis_domestica
ENSHBUG00000000562	prpf4	100	94.510	ENSMALG00000013624	prpf4	100	94.510	Monopterus_albus
ENSHBUG00000000562	prpf4	99	76.587	MGP_CAROLIEiJ_G0026078	Prpf4	96	76.587	Mus_caroli
ENSHBUG00000000562	prpf4	99	76.587	ENSMUSG00000066148	Prpf4	96	76.587	Mus_musculus
ENSHBUG00000000562	prpf4	99	76.786	MGP_PahariEiJ_G0028413	Prpf4	96	76.786	Mus_pahari
ENSHBUG00000000562	prpf4	99	76.587	MGP_SPRETEiJ_G0027042	Prpf4	96	76.587	Mus_spretus
ENSHBUG00000000562	prpf4	99	76.786	ENSMPUG00000007883	PRPF4	96	76.786	Mustela_putorius_furo
ENSHBUG00000000562	prpf4	99	75.681	ENSMLUG00000008626	-	94	75.681	Myotis_lucifugus
ENSHBUG00000000562	prpf4	99	76.587	ENSMLUG00000015309	-	93	76.587	Myotis_lucifugus
ENSHBUG00000000562	prpf4	99	71.627	ENSNGAG00000000468	Prpf4	96	71.627	Nannospalax_galili
ENSHBUG00000000562	prpf4	100	99.608	ENSNBRG00000007972	prpf4	100	99.608	Neolamprologus_brichardi
ENSHBUG00000000562	prpf4	99	76.786	ENSNLEG00000016647	PRPF4	96	76.786	Nomascus_leucogenys
ENSHBUG00000000562	prpf4	99	75.049	ENSMEUG00000013256	PRPF4	98	75.345	Notamacropus_eugenii
ENSHBUG00000000562	prpf4	99	77.183	ENSOPRG00000005302	PRPF4	96	77.183	Ochotona_princeps
ENSHBUG00000000562	prpf4	99	76.786	ENSODEG00000018147	PRPF4	96	76.786	Octodon_degus
ENSHBUG00000000562	prpf4	100	98.965	ENSONIG00000012671	prpf4	100	98.824	Oreochromis_niloticus
ENSHBUG00000000562	prpf4	99	76.984	ENSOCUG00000005046	PRPF4	96	76.984	Oryctolagus_cuniculus
ENSHBUG00000000562	prpf4	100	91.176	ENSORLG00000019641	prpf4	100	91.176	Oryzias_latipes
ENSHBUG00000000562	prpf4	100	91.176	ENSORLG00020019438	prpf4	100	91.176	Oryzias_latipes_hni
ENSHBUG00000000562	prpf4	100	91.097	ENSOMEG00000020941	prpf4	100	91.097	Oryzias_melastigma
ENSHBUG00000000562	prpf4	99	72.619	ENSOGAG00000007802	PRPF4	94	72.619	Otolemur_garnettii
ENSHBUG00000000562	prpf4	99	76.786	ENSOARG00000006319	PRPF4	93	76.786	Ovis_aries
ENSHBUG00000000562	prpf4	99	76.786	ENSPPAG00000041797	PRPF4	96	76.786	Pan_paniscus
ENSHBUG00000000562	prpf4	99	76.786	ENSPPRG00000014360	PRPF4	96	76.786	Panthera_pardus
ENSHBUG00000000562	prpf4	99	76.786	ENSPTIG00000009574	PRPF4	96	76.786	Panthera_tigris_altaica
ENSHBUG00000000562	prpf4	99	76.786	ENSPTRG00000021274	PRPF4	96	76.786	Pan_troglodytes
ENSHBUG00000000562	prpf4	99	76.984	ENSPANG00000025776	PRPF4	92	76.984	Papio_anubis
ENSHBUG00000000562	prpf4	100	80.980	ENSPKIG00000017259	prpf4	100	80.980	Paramormyrops_kingsleyae
ENSHBUG00000000562	prpf4	100	75.882	ENSPSIG00000010713	PRPF4	89	76.134	Pelodiscus_sinensis
ENSHBUG00000000562	prpf4	100	65.985	ENSPMGG00000000997	prpf4	98	67.286	Periophthalmus_magnuspinnatus
ENSHBUG00000000562	prpf4	99	76.587	ENSPEMG00000024115	Prpf4	96	76.587	Peromyscus_maniculatus_bairdii
ENSHBUG00000000562	prpf4	99	75.246	ENSPCIG00000003821	PRPF4	98	75.542	Phascolarctos_cinereus
ENSHBUG00000000562	prpf4	100	85.798	ENSPFOG00000013524	prpf4	99	89.970	Poecilia_formosa
ENSHBUG00000000562	prpf4	86	88.820	ENSPLAG00000011620	prpf4	96	88.820	Poecilia_latipinna
ENSHBUG00000000562	prpf4	98	90.265	ENSPMEG00000006813	prpf4	100	90.265	Poecilia_mexicana
ENSHBUG00000000562	prpf4	99	76.587	ENSPCAG00000002561	PRPF4	98	76.587	Procavia_capensis
ENSHBUG00000000562	prpf4	99	76.587	ENSPCOG00000011975	PRPF4	96	76.587	Propithecus_coquereli
ENSHBUG00000000562	prpf4	99	73.611	ENSPVAG00000004708	PRPF4	96	73.611	Pteropus_vampyrus
ENSHBUG00000000562	prpf4	100	99.804	ENSPNYG00000008013	prpf4	100	99.804	Pundamilia_nyererei
ENSHBUG00000000562	prpf4	100	79.804	ENSPNAG00000000697	prpf4	100	79.804	Pygocentrus_nattereri
ENSHBUG00000000562	prpf4	99	76.587	ENSRNOG00000014777	Prpf4	96	76.587	Rattus_norvegicus
ENSHBUG00000000562	prpf4	99	76.786	ENSRBIG00000040221	PRPF4	96	76.786	Rhinopithecus_bieti
ENSHBUG00000000562	prpf4	99	76.786	ENSRROG00000040240	PRPF4	96	76.786	Rhinopithecus_roxellana
ENSHBUG00000000562	prpf4	99	75.542	ENSSHAG00000017658	PRPF4	97	75.542	Sarcophilus_harrisii
ENSHBUG00000000562	prpf4	100	81.988	ENSSFOG00015008963	prpf4	100	81.961	Scleropages_formosus
ENSHBUG00000000562	prpf4	100	92.157	ENSSMAG00000008889	prpf4	100	92.157	Scophthalmus_maximus
ENSHBUG00000000562	prpf4	100	94.617	ENSSDUG00000022083	prpf4	94	94.617	Seriola_dumerili
ENSHBUG00000000562	prpf4	100	94.410	ENSSLDG00000008115	prpf4	94	94.410	Seriola_lalandi_dorsalis
ENSHBUG00000000562	prpf4	99	76.031	ENSSPUG00000015582	PRPF4	97	76.031	Sphenodon_punctatus
ENSHBUG00000000562	prpf4	100	87.329	ENSSPAG00000011286	prpf4	100	87.329	Stegastes_partitus
ENSHBUG00000000562	prpf4	99	76.786	ENSSSCG00000024648	PRPF4	96	76.786	Sus_scrofa
ENSHBUG00000000562	prpf4	97	77.576	ENSTGUG00000002623	PRPF4	100	77.802	Taeniopygia_guttata
ENSHBUG00000000562	prpf4	100	88.039	ENSTRUG00000008853	prpf4	100	88.039	Takifugu_rubripes
ENSHBUG00000000562	prpf4	100	88.845	ENSTNIG00000013250	prpf4	100	88.845	Tetraodon_nigroviridis
ENSHBUG00000000562	prpf4	99	69.643	ENSTBEG00000000821	PRPF4	96	69.643	Tupaia_belangeri
ENSHBUG00000000562	prpf4	89	78.859	ENSTTRG00000003246	PRPF4	85	78.859	Tursiops_truncatus
ENSHBUG00000000562	prpf4	66	72.871	ENSUAMG00000018288	PRPF4	88	73.463	Ursus_americanus
ENSHBUG00000000562	prpf4	99	76.190	ENSUMAG00000019375	PRPF4	96	76.190	Ursus_maritimus
ENSHBUG00000000562	prpf4	99	76.389	ENSVPAG00000005281	PRPF4	96	76.389	Vicugna_pacos
ENSHBUG00000000562	prpf4	99	75.984	ENSVVUG00000002476	PRPF4	99	75.787	Vulpes_vulpes
ENSHBUG00000000562	prpf4	74	66.209	ENSXCOG00000006101	prpf4	93	69.193	Xiphophorus_couchianus
ENSHBUG00000000562	prpf4	96	78.065	ENSXMAG00000002750	prpf4	100	79.412	Xiphophorus_maculatus