EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000001139 (Gene tree)
Gene ID: 102303467
Gene Symbol: pspc1
Alias: fj85a06|wu:fj85a06|zgc:136470
Full Name: paraspeckle component 1
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 17730 bases
Position: chrJH425485.1:220559-238288
Accession: 102303467
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000014049	RRM_1	PF00076.22	7.4e-31	1	2
ENSHBUP00000014049	RRM_1	PF00076.22	7.4e-31	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000021944	-	5279	XM_005933910	ENSHBUP00000014049	516 (aa)	XP_005933972	UPI0003BCFB2C

Gene Model

Click here to download ENSHBUG00000001139's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000001139's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000001139	pspc1	78	58.209	ENSHBUG00000016818	sfpq	71	50.964
ENSHBUG00000001139	pspc1	80	59.233	ENSHBUG00000010741	nono	100	51.569

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000001139	pspc1	87	69.742	ENSG00000121390	PSPC1	98	69.347	Homo_sapiens
ENSHBUG00000001139	pspc1	100	86.782	ENSAPOG00000015946	pspc1	100	86.015	Acanthochromis_polyacanthus
ENSHBUG00000001139	pspc1	100	64.126	ENSAMEG00000017420	PSPC1	99	64.498	Ailuropoda_melanoleuca
ENSHBUG00000001139	pspc1	100	83.815	ENSACIG00000018695	pspc1	100	82.659	Amphilophus_citrinellus
ENSHBUG00000001139	pspc1	100	86.641	ENSAOCG00000005279	pspc1	100	86.069	Amphiprion_ocellaris
ENSHBUG00000001139	pspc1	100	87.140	ENSAPEG00000015927	pspc1	100	86.564	Amphiprion_percula
ENSHBUG00000001139	pspc1	100	74.952	ENSATEG00000004878	pspc1	100	73.040	Anabas_testudineus
ENSHBUG00000001139	pspc1	76	67.482	ENSAPLG00000006246	PSPC1	100	67.971	Anas_platyrhynchos
ENSHBUG00000001139	pspc1	70	64.516	ENSAPLG00000003643	SFPQ	79	57.683	Anas_platyrhynchos
ENSHBUG00000001139	pspc1	67	59.104	ENSACAG00000013307	-	68	53.229	Anolis_carolinensis
ENSHBUG00000001139	pspc1	88	67.083	ENSACAG00000002093	PSPC1	99	63.419	Anolis_carolinensis
ENSHBUG00000001139	pspc1	100	63.586	ENSANAG00000000059	PSPC1	98	68.702	Aotus_nancymaae
ENSHBUG00000001139	pspc1	100	90.329	ENSACLG00000027220	pspc1	100	89.038	Astatotilapia_calliptera
ENSHBUG00000001139	pspc1	100	68.022	ENSAMXG00000036881	pspc1	100	68.843	Astyanax_mexicanus
ENSHBUG00000001139	pspc1	100	64.607	ENSBTAG00000003934	PSPC1	99	64.981	Bos_taurus
ENSHBUG00000001139	pspc1	100	63.586	ENSCJAG00000004554	PSPC1	99	64.325	Callithrix_jacchus
ENSHBUG00000001139	pspc1	87	69.742	ENSCAFG00020002009	PSPC1	98	70.202	Canis_lupus_dingo
ENSHBUG00000001139	pspc1	100	64.607	ENSCHIG00000016708	PSPC1	99	64.981	Capra_hircus
ENSHBUG00000001139	pspc1	75	63.725	ENSTSYG00000032882	PSPC1	88	62.899	Carlito_syrichta
ENSHBUG00000001139	pspc1	100	63.925	ENSCPOG00000000395	PSPC1	98	71.026	Cavia_porcellus
ENSHBUG00000001139	pspc1	100	63.586	ENSCCAG00000033498	PSPC1	99	64.325	Cebus_capucinus
ENSHBUG00000001139	pspc1	87	69.528	ENSCATG00000036434	PSPC1	90	79.321	Cercocebus_atys
ENSHBUG00000001139	pspc1	77	68.029	ENSCLAG00000005241	PSPC1	89	69.554	Chinchilla_lanigera
ENSHBUG00000001139	pspc1	100	60.221	ENSCHOG00000008913	PSPC1	99	60.958	Choloepus_hoffmanni
ENSHBUG00000001139	pspc1	87	68.522	ENSCPBG00000020859	PSPC1	88	68.951	Chrysemys_picta_bellii
ENSHBUG00000001139	pspc1	56	58.419	ENSCSAVG00000003533	-	53	59.712	Ciona_savignyi
ENSHBUG00000001139	pspc1	77	57.805	ENSCANG00000018948	PSPC1	87	80.916	Colobus_angolensis_palliatus
ENSHBUG00000001139	pspc1	100	63.265	ENSCGRG00001018368	Pspc1	99	64.193	Cricetulus_griseus_chok1gshd
ENSHBUG00000001139	pspc1	100	63.265	ENSCGRG00000011724	Pspc1	99	64.193	Cricetulus_griseus_crigri
ENSHBUG00000001139	pspc1	100	78.530	ENSCVAG00000007679	-	100	78.530	Cyprinodon_variegatus
ENSHBUG00000001139	pspc1	100	65.974	ENSDARG00000006621	pspc1	100	70.720	Danio_rerio
ENSHBUG00000001139	pspc1	100	64.299	ENSDNOG00000011078	PSPC1	99	64.564	Dasypus_novemcinctus
ENSHBUG00000001139	pspc1	100	61.967	ENSDORG00000016050	Pspc1	99	61.967	Dipodomys_ordii
ENSHBUG00000001139	pspc1	53	76.238	ENSETEG00000000502	-	72	76.238	Echinops_telfairi
ENSHBUG00000001139	pspc1	57	43.302	ENSEBUG00000010133	pspc1	77	44.746	Eptatretus_burgeri
ENSHBUG00000001139	pspc1	91	53.862	ENSEBUG00000003964	-	82	52.516	Eptatretus_burgeri
ENSHBUG00000001139	pspc1	100	64.850	ENSEASG00005000119	PSPC1	99	70.483	Equus_asinus_asinus
ENSHBUG00000001139	pspc1	100	64.850	ENSECAG00000017286	PSPC1	99	70.483	Equus_caballus
ENSHBUG00000001139	pspc1	63	59.202	ENSEEUG00000011288	-	61	59.327	Erinaceus_europaeus
ENSHBUG00000001139	pspc1	100	69.373	ENSELUG00000003746	pspc1	100	68.488	Esox_lucius
ENSHBUG00000001139	pspc1	100	64.299	ENSFCAG00000027841	PSPC1	98	69.925	Felis_catus
ENSHBUG00000001139	pspc1	89	67.782	ENSFALG00000008750	PSPC1	99	62.825	Ficedula_albicollis
ENSHBUG00000001139	pspc1	100	64.286	ENSFDAG00000002617	PSPC1	99	64.662	Fukomys_damarensis
ENSHBUG00000001139	pspc1	100	63.308	ENSGMOG00000015074	pspc1	100	63.826	Gadus_morhua
ENSHBUG00000001139	pspc1	87	68.522	ENSGALG00000017142	PSPC1	88	68.951	Gallus_gallus
ENSHBUG00000001139	pspc1	75	82.143	ENSGAFG00000006327	pspc1	81	82.143	Gambusia_affinis
ENSHBUG00000001139	pspc1	100	75.337	ENSGACG00000014901	pspc1	98	81.197	Gasterosteus_aculeatus
ENSHBUG00000001139	pspc1	70	64.228	ENSGAGG00000017325	-	64	57.619	Gopherus_agassizii
ENSHBUG00000001139	pspc1	87	68.522	ENSGAGG00000019164	PSPC1	88	68.951	Gopherus_agassizii
ENSHBUG00000001139	pspc1	87	69.742	ENSGGOG00000003414	PSPC1	98	69.347	Gorilla_gorilla
ENSHBUG00000001139	pspc1	100	64.432	ENSHGLG00000018811	PSPC1	99	64.804	Heterocephalus_glaber_female
ENSHBUG00000001139	pspc1	56	78.819	ENSHGLG00100007962	PSPC1	87	79.371	Heterocephalus_glaber_male
ENSHBUG00000001139	pspc1	80	79.759	ENSHCOG00000013251	pspc1	99	75.278	Hippocampus_comes
ENSHBUG00000001139	pspc1	100	69.868	ENSIPUG00000013192	pspc1	100	69.403	Ictalurus_punctatus
ENSHBUG00000001139	pspc1	100	63.168	ENSSTOG00000026833	PSPC1	98	70.918	Ictidomys_tridecemlineatus
ENSHBUG00000001139	pspc1	87	69.313	ENSJJAG00000018334	Pspc1	99	63.536	Jaculus_jaculus
ENSHBUG00000001139	pspc1	100	65.769	ENSKMAG00000013525	-	98	75.211	Kryptolebias_marmoratus
ENSHBUG00000001139	pspc1	99	77.903	ENSLBEG00000004474	pspc1	100	76.923	Labrus_bergylta
ENSHBUG00000001139	pspc1	100	63.822	ENSLACG00000010762	PSPC1	100	64.739	Latimeria_chalumnae
ENSHBUG00000001139	pspc1	100	68.550	ENSLOCG00000010832	pspc1	99	68.927	Lepisosteus_oculatus
ENSHBUG00000001139	pspc1	100	64.419	ENSLAFG00000010968	PSPC1	99	64.981	Loxodonta_africana
ENSHBUG00000001139	pspc1	87	69.528	ENSMFAG00000032728	PSPC1	91	79.385	Macaca_fascicularis
ENSHBUG00000001139	pspc1	87	69.528	ENSMMUG00000020262	PSPC1	88	79.321	Macaca_mulatta
ENSHBUG00000001139	pspc1	87	69.528	ENSMNEG00000027401	PSPC1	98	66.667	Macaca_nemestrina
ENSHBUG00000001139	pspc1	75	69.059	ENSMLEG00000039043	PSPC1	94	69.802	Mandrillus_leucophaeus
ENSHBUG00000001139	pspc1	100	82.298	ENSMAMG00000004333	pspc1	100	81.733	Mastacembelus_armatus
ENSHBUG00000001139	pspc1	100	90.329	ENSMZEG00005005726	pspc1	100	89.038	Maylandia_zebra
ENSHBUG00000001139	pspc1	77	67.397	ENSMGAG00000015134	PSPC1	100	67.883	Meleagris_gallopavo
ENSHBUG00000001139	pspc1	88	61.134	ENSMAUG00000021067	Pspc1	99	59.708	Mesocricetus_auratus
ENSHBUG00000001139	pspc1	87	71.092	ENSMICG00000013970	PSPC1	98	69.173	Microcebus_murinus
ENSHBUG00000001139	pspc1	100	63.031	ENSMOCG00000006060	Pspc1	99	64.662	Microtus_ochrogaster
ENSHBUG00000001139	pspc1	81	89.286	ENSMMOG00000004352	pspc1	71	88.889	Mola_mola
ENSHBUG00000001139	pspc1	77	73.850	ENSMODG00000008029	PSPC1	76	66.872	Monodelphis_domestica
ENSHBUG00000001139	pspc1	100	82.171	ENSMALG00000008914	pspc1	100	81.589	Monopterus_albus
ENSHBUG00000001139	pspc1	100	63.216	MGP_CAROLIEiJ_G0019341	Pspc1	99	66.250	Mus_caroli
ENSHBUG00000001139	pspc1	100	63.401	ENSMUSG00000021938	Pspc1	99	66.250	Mus_musculus
ENSHBUG00000001139	pspc1	100	63.216	MGP_PahariEiJ_G0030359	Pspc1	99	66.250	Mus_pahari
ENSHBUG00000001139	pspc1	100	63.401	MGP_SPRETEiJ_G0020232	Pspc1	99	66.250	Mus_spretus
ENSHBUG00000001139	pspc1	87	69.742	ENSMPUG00000013347	PSPC1	99	64.695	Mustela_putorius_furo
ENSHBUG00000001139	pspc1	87	69.296	ENSMLUG00000017663	PSPC1	99	64.140	Myotis_lucifugus
ENSHBUG00000001139	pspc1	100	63.519	ENSNGAG00000011271	Pspc1	99	64.391	Nannospalax_galili
ENSHBUG00000001139	pspc1	75	89.203	ENSNBRG00000014059	pspc1	92	88.832	Neolamprologus_brichardi
ENSHBUG00000001139	pspc1	87	69.742	ENSNLEG00000001294	PSPC1	100	64.444	Nomascus_leucogenys
ENSHBUG00000001139	pspc1	72	74.227	ENSMEUG00000000476	PSPC1	84	60.674	Notamacropus_eugenii
ENSHBUG00000001139	pspc1	100	55.844	ENSODEG00000007817	-	99	54.529	Octodon_degus
ENSHBUG00000001139	pspc1	100	58.226	ENSODEG00000019012	-	99	59.888	Octodon_degus
ENSHBUG00000001139	pspc1	100	98.259	ENSONIG00000012010	pspc1	99	98.259	Oreochromis_niloticus
ENSHBUG00000001139	pspc1	78	57.524	ENSOANG00000011381	-	82	58.010	Ornithorhynchus_anatinus
ENSHBUG00000001139	pspc1	75	68.486	ENSOANG00000009017	-	100	69.059	Ornithorhynchus_anatinus
ENSHBUG00000001139	pspc1	87	69.742	ENSOCUG00000006153	PSPC1	99	63.904	Oryctolagus_cuniculus
ENSHBUG00000001139	pspc1	100	79.151	ENSORLG00000004232	-	100	77.992	Oryzias_latipes
ENSHBUG00000001139	pspc1	100	79.344	ENSORLG00020000578	PSPC1	100	76.493	Oryzias_latipes_hni
ENSHBUG00000001139	pspc1	100	79.537	ENSORLG00015017480	pspc1	100	78.378	Oryzias_latipes_hsok
ENSHBUG00000001139	pspc1	87	69.957	ENSOGAG00000012643	PSPC1	99	65.047	Otolemur_garnettii
ENSHBUG00000001139	pspc1	87	69.397	ENSOARG00000014163	PSPC1	95	67.888	Ovis_aries
ENSHBUG00000001139	pspc1	87	63.519	ENSPPAG00000009836	PSPC1	92	79.321	Pan_paniscus
ENSHBUG00000001139	pspc1	100	64.299	ENSPPRG00000008833	PSPC1	99	64.695	Panthera_pardus
ENSHBUG00000001139	pspc1	75	69.307	ENSPTIG00000016917	PSPC1	84	69.802	Panthera_tigris_altaica
ENSHBUG00000001139	pspc1	77	73.850	ENSPTRG00000005677	PSPC1	98	69.347	Pan_troglodytes
ENSHBUG00000001139	pspc1	87	69.528	ENSPANG00000001992	PSPC1	89	79.385	Papio_anubis
ENSHBUG00000001139	pspc1	100	64.982	ENSPKIG00000003578	pspc1	100	69.418	Paramormyrops_kingsleyae
ENSHBUG00000001139	pspc1	99	61.887	ENSPSIG00000005168	PSPC1	88	68.094	Pelodiscus_sinensis
ENSHBUG00000001139	pspc1	69	74.095	ENSPMGG00000015135	pspc1	98	73.876	Periophthalmus_magnuspinnatus
ENSHBUG00000001139	pspc1	100	62.894	ENSPEMG00000015214	Pspc1	99	64.007	Peromyscus_maniculatus_bairdii
ENSHBUG00000001139	pspc1	55	42.177	ENSPMAG00000004618	pspc1	89	42.177	Petromyzon_marinus
ENSHBUG00000001139	pspc1	87	69.742	ENSPCIG00000017680	PSPC1	100	64.444	Phascolarctos_cinereus
ENSHBUG00000001139	pspc1	99	81.818	ENSPFOG00000003362	pspc1	100	81.431	Poecilia_formosa
ENSHBUG00000001139	pspc1	100	81.801	ENSPLAG00000011540	pspc1	100	81.418	Poecilia_latipinna
ENSHBUG00000001139	pspc1	83	51.461	ENSPLAG00000004407	-	59	51.116	Poecilia_latipinna
ENSHBUG00000001139	pspc1	100	81.418	ENSPMEG00000008322	pspc1	100	81.034	Poecilia_mexicana
ENSHBUG00000001139	pspc1	83	52.242	ENSPMEG00000001025	-	58	51.893	Poecilia_mexicana
ENSHBUG00000001139	pspc1	100	81.034	ENSPREG00000007786	pspc1	100	80.651	Poecilia_reticulata
ENSHBUG00000001139	pspc1	87	69.313	ENSPPYG00000005186	PSPC1	97	66.597	Pongo_abelii
ENSHBUG00000001139	pspc1	56	84.049	ENSPCAG00000008314	-	55	84.049	Procavia_capensis
ENSHBUG00000001139	pspc1	87	67.024	ENSPCOG00000014364	PSPC1	99	60.589	Propithecus_coquereli
ENSHBUG00000001139	pspc1	87	69.872	ENSPVAG00000005036	PSPC1	99	64.880	Pteropus_vampyrus
ENSHBUG00000001139	pspc1	100	90.716	ENSPNYG00000008893	pspc1	100	89.423	Pundamilia_nyererei
ENSHBUG00000001139	pspc1	100	70.265	ENSPNAG00000016511	pspc1	100	70.356	Pygocentrus_nattereri
ENSHBUG00000001139	pspc1	100	62.894	ENSRNOG00000020782	Pspc1	99	66.387	Rattus_norvegicus
ENSHBUG00000001139	pspc1	87	69.742	ENSRBIG00000036057	PSPC1	91	79.321	Rhinopithecus_bieti
ENSHBUG00000001139	pspc1	87	69.742	ENSRROG00000036334	PSPC1	98	69.598	Rhinopithecus_roxellana
ENSHBUG00000001139	pspc1	78	59.569	ENSSBOG00000028172	PSPC1	96	73.333	Saimiri_boliviensis_boliviensis
ENSHBUG00000001139	pspc1	87	64.744	ENSSHAG00000004696	PSPC1	99	60.074	Sarcophilus_harrisii
ENSHBUG00000001139	pspc1	88	72.349	ENSSFOG00015001395	pspc1	99	76.119	Scleropages_formosus
ENSHBUG00000001139	pspc1	100	82.987	ENSSMAG00000001761	pspc1	100	82.609	Scophthalmus_maximus
ENSHBUG00000001139	pspc1	100	82.963	ENSSDUG00000010651	pspc1	100	83.889	Seriola_dumerili
ENSHBUG00000001139	pspc1	100	76.015	ENSSLDG00000004284	pspc1	100	76.054	Seriola_lalandi_dorsalis
ENSHBUG00000001139	pspc1	87	63.948	ENSSARG00000000888	PSPC1	99	59.962	Sorex_araneus
ENSHBUG00000001139	pspc1	99	52.142	ENSSPUG00000008550	PSPC1	99	53.432	Sphenodon_punctatus
ENSHBUG00000001139	pspc1	86	49.453	ENSSPUG00000001136	-	52	55.271	Sphenodon_punctatus
ENSHBUG00000001139	pspc1	100	86.226	ENSSPAG00000001921	pspc1	100	85.472	Stegastes_partitus
ENSHBUG00000001139	pspc1	87	69.742	ENSSSCG00000009569	PSPC1	99	70.663	Sus_scrofa
ENSHBUG00000001139	pspc1	87	68.522	ENSTGUG00000011295	PSPC1	99	68.951	Taeniopygia_guttata
ENSHBUG00000001139	pspc1	100	76.596	ENSTRUG00000011335	pspc1	100	74.855	Takifugu_rubripes
ENSHBUG00000001139	pspc1	100	75.000	ENSTNIG00000010358	pspc1	100	75.000	Tetraodon_nigroviridis
ENSHBUG00000001139	pspc1	87	60.087	ENSTBEG00000002361	PSPC1	99	54.935	Tupaia_belangeri
ENSHBUG00000001139	pspc1	100	64.474	ENSTTRG00000003343	PSPC1	99	64.850	Tursiops_truncatus
ENSHBUG00000001139	pspc1	69	68.698	ENSUAMG00000012309	PSPC1	99	68.994	Ursus_americanus
ENSHBUG00000001139	pspc1	87	69.528	ENSUMAG00000013993	PSPC1	91	79.012	Ursus_maritimus
ENSHBUG00000001139	pspc1	75	69.059	ENSVPAG00000010029	PSPC1	100	69.554	Vicugna_pacos
ENSHBUG00000001139	pspc1	87	69.742	ENSVVUG00000006414	PSPC1	99	70.202	Vulpes_vulpes
ENSHBUG00000001139	pspc1	75	83.163	ENSXCOG00000017438	pspc1	93	83.163	Xiphophorus_couchianus
ENSHBUG00000001139	pspc1	75	83.418	ENSXMAG00000007929	pspc1	93	83.418	Xiphophorus_maculatus