EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000001475 (Gene tree)
Gene ID: -
Gene Symbol: prdm1b
Alias: -
Full Name: PR domain zinc finger protein 1-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 13039 bases
Position: chrJH425576.1:820363-833401
Accession: 102303686
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000000309	zf-C2H2	PF00096.26	2.4e-17	1	3
ENSHBUP00000000309	zf-C2H2	PF00096.26	2.4e-17	2	3
ENSHBUP00000000309	zf-C2H2	PF00096.26	2.4e-17	3	3
ENSHBUP00000000309	zf-met	PF12874.7	1.3e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000015693	-	1365	XM_005938780	ENSHBUP00000000323	454 (aa)	XP_005938842	-
ENSHBUT00000015699	-	1800	-	ENSHBUP00000000309	599 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000001475's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000001475's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000001475	prdm1b	73	71.526	ENSAPOG00000022084	prdm1b	92	73.121	Acanthochromis_polyacanthus
ENSHBUG00000001475	prdm1b	90	39.439	ENSAPOG00000014135	-	74	39.439	Acanthochromis_polyacanthus
ENSHBUG00000001475	prdm1b	95	86.528	ENSACIG00000014426	prdm1b	94	86.528	Amphilophus_citrinellus
ENSHBUG00000001475	prdm1b	94	77.345	ENSAOCG00000002230	prdm1b	97	77.043	Amphiprion_ocellaris
ENSHBUG00000001475	prdm1b	94	76.418	ENSAPEG00000019826	prdm1b	94	76.481	Amphiprion_percula
ENSHBUG00000001475	prdm1b	95	36.758	ENSATEG00000014034	-	79	36.758	Anabas_testudineus
ENSHBUG00000001475	prdm1b	95	84.948	ENSATEG00000006924	prdm1b	93	84.948	Anabas_testudineus
ENSHBUG00000001475	prdm1b	100	98.831	ENSACLG00000005487	prdm1b	94	98.831	Astatotilapia_calliptera
ENSHBUG00000001475	prdm1b	68	61.972	ENSCSEG00000009707	prdm1a	60	61.972	Cynoglossus_semilaevis
ENSHBUG00000001475	prdm1b	95	78.709	ENSCVAG00000016746	prdm1b	92	78.571	Cyprinodon_variegatus
ENSHBUG00000001475	prdm1b	95	79.720	ENSFHEG00000019848	prdm1b	93	79.720	Fundulus_heteroclitus
ENSHBUG00000001475	prdm1b	95	80.717	ENSGAFG00000016191	prdm1b	93	80.887	Gambusia_affinis
ENSHBUG00000001475	prdm1b	94	71.475	ENSGACG00000002716	prdm1b	86	71.475	Gasterosteus_aculeatus
ENSHBUG00000001475	prdm1b	95	73.838	ENSHCOG00000003617	prdm1b	93	73.838	Hippocampus_comes
ENSHBUG00000001475	prdm1b	91	75.581	ENSIPUG00000013740	prdm1b	72	75.581	Ictalurus_punctatus
ENSHBUG00000001475	prdm1b	94	74.517	ENSKMAG00000011218	prdm1b	91	74.517	Kryptolebias_marmoratus
ENSHBUG00000001475	prdm1b	90	38.843	ENSKMAG00000016247	-	75	38.843	Kryptolebias_marmoratus
ENSHBUG00000001475	prdm1b	95	83.162	ENSLBEG00000020955	prdm1b	93	83.162	Labrus_bergylta
ENSHBUG00000001475	prdm1b	76	76.056	ENSLOCG00000004978	prdm1b	62	76.056	Lepisosteus_oculatus
ENSHBUG00000001475	prdm1b	95	96.853	ENSMZEG00005026361	prdm1b	88	96.853	Maylandia_zebra
ENSHBUG00000001475	prdm1b	95	83.681	ENSMMOG00000013458	prdm1b	95	83.681	Mola_mola
ENSHBUG00000001475	prdm1b	95	80.696	ENSMALG00000011410	prdm1b	95	80.870	Monopterus_albus
ENSHBUG00000001475	prdm1b	79	91.966	ENSONIG00000013583	prdm1b	64	91.966	Oreochromis_niloticus
ENSHBUG00000001475	prdm1b	95	71.477	ENSORLG00000010025	prdm1b	95	71.309	Oryzias_latipes
ENSHBUG00000001475	prdm1b	93	71.695	ENSORLG00015009022	prdm1b	92	71.525	Oryzias_latipes_hsok
ENSHBUG00000001475	prdm1b	94	49.648	ENSPKIG00000022335	prdm1b	76	50.436	Paramormyrops_kingsleyae
ENSHBUG00000001475	prdm1b	89	71.634	ENSPFOG00000003103	prdm1b	85	71.634	Poecilia_formosa
ENSHBUG00000001475	prdm1b	95	81.928	ENSPLAG00000018491	prdm1b	92	81.928	Poecilia_latipinna
ENSHBUG00000001475	prdm1b	95	83.770	ENSPMEG00000007869	prdm1b	92	83.770	Poecilia_mexicana
ENSHBUG00000001475	prdm1b	95	81.538	ENSPREG00000011327	prdm1b	92	81.538	Poecilia_reticulata
ENSHBUG00000001475	prdm1b	94	39.759	ENSPVAG00000011732	PRDM1	81	40.512	Pteropus_vampyrus
ENSHBUG00000001475	prdm1b	92	42.159	ENSPNAG00000028442	prdm1a	75	42.159	Pygocentrus_nattereri
ENSHBUG00000001475	prdm1b	92	60.072	ENSSFOG00015021896	prdm1b	77	60.072	Scleropages_formosus
ENSHBUG00000001475	prdm1b	95	80.723	ENSSMAG00000020467	prdm1b	93	80.501	Scophthalmus_maximus
ENSHBUG00000001475	prdm1b	90	38.736	ENSSDUG00000000524	-	75	38.736	Seriola_dumerili
ENSHBUG00000001475	prdm1b	95	85.026	ENSSDUG00000020610	prdm1b	92	85.026	Seriola_dumerili
ENSHBUG00000001475	prdm1b	95	85.217	ENSSLDG00000021973	prdm1b	94	85.217	Seriola_lalandi_dorsalis
ENSHBUG00000001475	prdm1b	90	38.126	ENSSLDG00000001957	-	75	38.126	Seriola_lalandi_dorsalis
ENSHBUG00000001475	prdm1b	95	81.739	ENSSPAG00000000803	prdm1b	94	81.913	Stegastes_partitus
ENSHBUG00000001475	prdm1b	97	37.577	ENSSPAG00000009830	-	80	37.577	Stegastes_partitus
ENSHBUG00000001475	prdm1b	95	82.168	ENSXCOG00000018920	prdm1b	82	82.168	Xiphophorus_couchianus
ENSHBUG00000001475	prdm1b	97	78.094	ENSXMAG00000016765	prdm1b	97	78.094	Xiphophorus_maculatus