EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000002973 (Gene tree)
Gene ID: 102307813
Gene Symbol: smarcal1
Alias: im:7145331|si:ch211-239d11.1
Full Name: SWI/SNF related%2C matrix associated%2C actin dependent regulator of chromatin%2C subfamily a like 1
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 10638 bases
Position: chrJH425344.1:2099558-2110195
Accession: 102307813
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000001810	ResIII	PF04851.15	3.9e-06	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000013166	-	3202	XM_005918281	ENSHBUP00000001810	899 (aa)	XP_005918343	UPI0003BCFF97

Gene Model

Click here to download ENSHBUG00000002973's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000002973's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000002973	smarcal1	97	51.765	ENSG00000138375	SMARCAL1	99	68.323	Homo_sapiens
ENSHBUG00000002973	smarcal1	99	82.060	ENSAPOG00000020156	SMARCAL1	99	82.060	Acanthochromis_polyacanthus
ENSHBUG00000002973	smarcal1	93	93.372	ENSACIG00000001500	smarcal1	97	93.372	Amphilophus_citrinellus
ENSHBUG00000002973	smarcal1	99	81.889	ENSAOCG00000014266	SMARCAL1	99	81.778	Amphiprion_ocellaris
ENSHBUG00000002973	smarcal1	99	82.000	ENSAPEG00000015861	SMARCAL1	98	87.288	Amphiprion_percula
ENSHBUG00000002973	smarcal1	99	78.681	ENSATEG00000020624	SMARCAL1	99	78.681	Anabas_testudineus
ENSHBUG00000002973	smarcal1	79	63.534	ENSAPLG00000009864	SMARCAL1	76	62.350	Anas_platyrhynchos
ENSHBUG00000002973	smarcal1	78	65.625	ENSACAG00000004612	SMARCAL1	71	65.625	Anolis_carolinensis
ENSHBUG00000002973	smarcal1	100	98.888	ENSACLG00000015990	SMARCAL1	100	98.888	Astatotilapia_calliptera
ENSHBUG00000002973	smarcal1	99	66.519	ENSAMXG00000003350	smarcal1	99	66.002	Astyanax_mexicanus
ENSHBUG00000002973	smarcal1	77	66.667	ENSCPBG00000013599	SMARCAL1	70	66.667	Chrysemys_picta_bellii
ENSHBUG00000002973	smarcal1	71	48.281	ENSCING00000009308	-	100	48.281	Ciona_intestinalis
ENSHBUG00000002973	smarcal1	98	72.545	ENSCSEG00000010785	SMARCAL1	99	72.768	Cynoglossus_semilaevis
ENSHBUG00000002973	smarcal1	98	74.774	ENSCVAG00000018780	SMARCAL1	97	74.774	Cyprinodon_variegatus
ENSHBUG00000002973	smarcal1	79	46.483	ENSEBUG00000011906	SMARCAL1	99	45.612	Eptatretus_burgeri
ENSHBUG00000002973	smarcal1	79	76.157	ENSELUG00000010440	-	73	73.280	Esox_lucius
ENSHBUG00000002973	smarcal1	97	53.765	ENSFALG00000003981	SMARCAL1	75	63.260	Ficedula_albicollis
ENSHBUG00000002973	smarcal1	99	74.333	ENSFHEG00000008380	SMARCAL1	99	74.333	Fundulus_heteroclitus
ENSHBUG00000002973	smarcal1	61	75.414	ENSGMOG00000010034	smarcal1	93	75.414	Gadus_morhua
ENSHBUG00000002973	smarcal1	80	62.656	ENSGALG00000011475	RPL37A	74	62.656	Gallus_gallus
ENSHBUG00000002973	smarcal1	87	83.551	ENSGACG00000006073	SMARCAL1	100	85.289	Gasterosteus_aculeatus
ENSHBUG00000002973	smarcal1	93	54.940	ENSGAGG00000015660	SMARCAL1	71	67.786	Gopherus_agassizii
ENSHBUG00000002973	smarcal1	96	71.445	ENSHCOG00000017921	smarcal1	98	71.445	Hippocampus_comes
ENSHBUG00000002973	smarcal1	97	75.028	ENSKMAG00000012023	SMARCAL1	99	74.801	Kryptolebias_marmoratus
ENSHBUG00000002973	smarcal1	93	81.978	ENSLBEG00000022915	smarcal1	100	81.978	Labrus_bergylta
ENSHBUG00000002973	smarcal1	91	77.752	ENSLBEG00000003493	smarcal1	100	77.752	Labrus_bergylta
ENSHBUG00000002973	smarcal1	99	52.063	ENSLACG00000010974	SMARCAL1	98	52.059	Latimeria_chalumnae
ENSHBUG00000002973	smarcal1	93	65.461	ENSLOCG00000009637	smarcal1	99	65.461	Lepisosteus_oculatus
ENSHBUG00000002973	smarcal1	98	79.326	ENSMAMG00000000828	SMARCAL1	99	79.326	Mastacembelus_armatus
ENSHBUG00000002973	smarcal1	100	98.776	ENSMZEG00005007660	SMARCAL1	100	98.776	Maylandia_zebra
ENSHBUG00000002973	smarcal1	97	55.022	ENSMGAG00000011658	SMARCAL1	96	55.604	Meleagris_gallopavo
ENSHBUG00000002973	smarcal1	93	77.446	ENSMMOG00000003842	smarcal1	94	77.446	Mola_mola
ENSHBUG00000002973	smarcal1	97	51.534	ENSMODG00000015544	SMARCAL1	96	51.544	Monodelphis_domestica
ENSHBUG00000002973	smarcal1	93	98.127	ENSNBRG00000016273	smarcal1	97	98.127	Neolamprologus_brichardi
ENSHBUG00000002973	smarcal1	93	52.974	ENSMEUG00000004395	SMARCAL1	100	53.244	Notamacropus_eugenii
ENSHBUG00000002973	smarcal1	100	96.778	ENSONIG00000009036	smarcal1	100	96.778	Oreochromis_niloticus
ENSHBUG00000002973	smarcal1	99	72.486	ENSORLG00000016455	SMARCAL1	99	72.376	Oryzias_latipes
ENSHBUG00000002973	smarcal1	99	72.898	ENSORLG00020001610	SMARCAL1	99	72.677	Oryzias_latipes_hni
ENSHBUG00000002973	smarcal1	99	72.788	ENSORLG00015001865	SMARCAL1	99	72.566	Oryzias_latipes_hsok
ENSHBUG00000002973	smarcal1	99	74.860	ENSOMEG00000001845	smarcal1	98	74.860	Oryzias_melastigma
ENSHBUG00000002973	smarcal1	99	73.602	ENSPMGG00000019092	SMARCAL1	98	73.937	Periophthalmus_magnuspinnatus
ENSHBUG00000002973	smarcal1	77	61.527	ENSPCIG00000022514	SMARCAL1	73	62.310	Phascolarctos_cinereus
ENSHBUG00000002973	smarcal1	99	75.083	ENSPFOG00000000560	SMARCAL1	99	75.637	Poecilia_formosa
ENSHBUG00000002973	smarcal1	99	75.083	ENSPMEG00000018146	SMARCAL1	99	75.637	Poecilia_mexicana
ENSHBUG00000002973	smarcal1	60	85.880	ENSPREG00000009591	SMARCAL1	97	85.880	Poecilia_reticulata
ENSHBUG00000002973	smarcal1	97	67.460	ENSPNAG00000014900	smarcal1	91	68.027	Pygocentrus_nattereri
ENSHBUG00000002973	smarcal1	97	50.161	ENSSHAG00000013538	SMARCAL1	98	49.475	Sarcophilus_harrisii
ENSHBUG00000002973	smarcal1	99	79.075	ENSSMAG00000010427	SMARCAL1	98	78.791	Scophthalmus_maximus
ENSHBUG00000002973	smarcal1	98	81.991	ENSSDUG00000017470	SMARCAL1	95	82.287	Seriola_dumerili
ENSHBUG00000002973	smarcal1	99	81.093	ENSSLDG00000007224	SMARCAL1	99	81.202	Seriola_lalandi_dorsalis
ENSHBUG00000002973	smarcal1	76	67.442	ENSSPUG00000015369	SMARCAL1	69	67.442	Sphenodon_punctatus
ENSHBUG00000002973	smarcal1	84	88.429	ENSSPAG00000003742	smarcal1	99	88.429	Stegastes_partitus
ENSHBUG00000002973	smarcal1	77	59.222	ENSSSCG00000035501	SMARCAL1	76	59.222	Sus_scrofa
ENSHBUG00000002973	smarcal1	76	63.730	ENSTGUG00000005079	SMARCAL1	99	63.730	Taeniopygia_guttata
ENSHBUG00000002973	smarcal1	99	63.455	ENSTRUG00000010701	SMARCAL1	100	63.455	Takifugu_rubripes
ENSHBUG00000002973	smarcal1	97	44.706	ENSTTRG00000009001	SMARCAL1	96	44.610	Tursiops_truncatus
ENSHBUG00000002973	smarcal1	97	58.351	ENSXETG00000000465	smarcal1	97	58.351	Xenopus_tropicalis