EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000003236 (Gene tree)
Gene ID: 102306770
Gene Symbol: snrpd1
Alias: CHUNP6882|fk26a01|wu:fk26a01|zgc:86929
Full Name: small nuclear ribonucleoprotein D1 polypeptide
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 8682 bases
Position: chrJH425340.1:787517-796198
Accession: 102306770
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000022774	LSM	PF01423.22	5.9e-19	1	1
ENSHBUP00000022776	LSM	PF01423.22	2e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000012777	-	4845	-	ENSHBUP00000022776	205 (aa)	-	-
ENSHBUT00000012790	-	793	XM_005917434	ENSHBUP00000022774	119 (aa)	XP_005917496	UPI00022B1FFC

Gene Model

Click here to download ENSHBUG00000003236's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000003236's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000003236	snrpd1	62	35.135	ENSHBUG00000001722	oscp1a	60	35.135
ENSHBUG00000003236	snrpd1	84	30.769	ENSHBUG00000001332	snrpd3l	65	31.325

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000003236	snrpd1	100	96.639	ENSG00000167088	SNRPD1	100	96.639	Homo_sapiens
ENSHBUG00000003236	snrpd1	100	100.000	ENSAPOG00000019446	snrpd1	65	100.000	Acanthochromis_polyacanthus
ENSHBUG00000003236	snrpd1	98	94.872	ENSAMEG00000002576	SNRPD1	100	94.872	Ailuropoda_melanoleuca
ENSHBUG00000003236	snrpd1	94	100.000	ENSACIG00000011263	snrpd1	100	100.000	Amphilophus_citrinellus
ENSHBUG00000003236	snrpd1	100	100.000	ENSAOCG00000007406	snrpd1	100	100.000	Amphiprion_ocellaris
ENSHBUG00000003236	snrpd1	100	95.798	ENSAPEG00000014961	snrpd1	100	95.798	Amphiprion_percula
ENSHBUG00000003236	snrpd1	94	100.000	ENSAPEG00000012539	SNRPD1	100	100.000	Amphiprion_percula
ENSHBUG00000003236	snrpd1	100	100.000	ENSATEG00000014399	snrpd1	100	100.000	Anabas_testudineus
ENSHBUG00000003236	snrpd1	97	96.522	ENSAPLG00000012256	SNRPD1	97	96.522	Anas_platyrhynchos
ENSHBUG00000003236	snrpd1	100	96.639	ENSACAG00000006364	SNRPD1	100	96.639	Anolis_carolinensis
ENSHBUG00000003236	snrpd1	100	96.639	ENSANAG00000025641	SNRPD1	100	96.639	Aotus_nancymaae
ENSHBUG00000003236	snrpd1	94	100.000	ENSACLG00000017406	snrpd1	100	100.000	Astatotilapia_calliptera
ENSHBUG00000003236	snrpd1	100	99.160	ENSAMXG00000004589	snrpd1	100	99.160	Astyanax_mexicanus
ENSHBUG00000003236	snrpd1	100	96.639	ENSBTAG00000008292	SNRPD1	100	96.639	Bos_taurus
ENSHBUG00000003236	snrpd1	79	90.426	ENSBTAG00000055316	-	81	90.426	Bos_taurus
ENSHBUG00000003236	snrpd1	81	93.750	ENSBTAG00000012376	-	72	93.750	Bos_taurus
ENSHBUG00000003236	snrpd1	94	92.857	ENSBTAG00000047266	-	94	92.857	Bos_taurus
ENSHBUG00000003236	snrpd1	74	78.409	WBGene00004916	snr-3	76	73.958	Caenorhabditis_elegans
ENSHBUG00000003236	snrpd1	100	96.639	ENSCJAG00000042955	SNRPD1	100	96.639	Callithrix_jacchus
ENSHBUG00000003236	snrpd1	100	96.639	ENSCAFG00000018247	SNRPD1	100	96.639	Canis_familiaris
ENSHBUG00000003236	snrpd1	80	95.789	ENSCAFG00020015914	SNRPD1	74	95.789	Canis_lupus_dingo
ENSHBUG00000003236	snrpd1	94	93.750	ENSCHIG00000005557	SNRPD1	92	95.455	Capra_hircus
ENSHBUG00000003236	snrpd1	100	96.639	ENSTSYG00000030028	SNRPD1	100	96.639	Carlito_syrichta
ENSHBUG00000003236	snrpd1	91	95.370	ENSCAPG00000008103	SNRPD1	93	95.370	Cavia_aperea
ENSHBUG00000003236	snrpd1	100	96.639	ENSCPOG00000004679	SNRPD1	100	96.639	Cavia_porcellus
ENSHBUG00000003236	snrpd1	94	95.536	ENSCCAG00000020611	-	94	95.536	Cebus_capucinus
ENSHBUG00000003236	snrpd1	94	93.750	ENSCCAG00000016652	-	94	93.750	Cebus_capucinus
ENSHBUG00000003236	snrpd1	81	91.667	ENSCCAG00000005390	-	81	91.667	Cebus_capucinus
ENSHBUG00000003236	snrpd1	100	96.639	ENSCCAG00000032658	SNRPD1	100	96.639	Cebus_capucinus
ENSHBUG00000003236	snrpd1	100	96.639	ENSCATG00000039978	SNRPD1	100	96.639	Cercocebus_atys
ENSHBUG00000003236	snrpd1	100	96.639	ENSCLAG00000008691	SNRPD1	100	96.639	Chinchilla_lanigera
ENSHBUG00000003236	snrpd1	100	96.639	ENSCSAG00000017654	SNRPD1	100	96.639	Chlorocebus_sabaeus
ENSHBUG00000003236	snrpd1	100	96.639	ENSCPBG00000023143	SNRPD1	100	96.639	Chrysemys_picta_bellii
ENSHBUG00000003236	snrpd1	72	84.884	ENSCING00000024100	-	69	84.884	Ciona_intestinalis
ENSHBUG00000003236	snrpd1	73	83.908	ENSCSAVG00000004578	-	70	83.908	Ciona_savignyi
ENSHBUG00000003236	snrpd1	81	71.875	ENSCGRG00001009945	-	85	71.875	Cricetulus_griseus_chok1gshd
ENSHBUG00000003236	snrpd1	100	96.639	ENSCGRG00001021055	-	100	96.639	Cricetulus_griseus_chok1gshd
ENSHBUG00000003236	snrpd1	100	96.639	ENSCGRG00000000490	-	100	96.639	Cricetulus_griseus_crigri
ENSHBUG00000003236	snrpd1	81	71.875	ENSCGRG00000006224	-	85	71.875	Cricetulus_griseus_crigri
ENSHBUG00000003236	snrpd1	100	98.319	ENSCSEG00000018141	snrpd1	100	98.319	Cynoglossus_semilaevis
ENSHBUG00000003236	snrpd1	100	100.000	ENSCVAG00000000534	snrpd1	100	100.000	Cyprinodon_variegatus
ENSHBUG00000003236	snrpd1	100	99.160	ENSDARG00000011648	snrpd1	100	99.160	Danio_rerio
ENSHBUG00000003236	snrpd1	100	96.639	ENSDNOG00000040310	SNRPD1	100	96.639	Dasypus_novemcinctus
ENSHBUG00000003236	snrpd1	100	96.639	ENSDORG00000008349	Snrpd1	100	96.639	Dipodomys_ordii
ENSHBUG00000003236	snrpd1	79	80.851	FBgn0261933	SmD1	77	80.208	Drosophila_melanogaster
ENSHBUG00000003236	snrpd1	68	95.062	ENSETEG00000011689	SNRPD1	68	95.062	Echinops_telfairi
ENSHBUG00000003236	snrpd1	94	92.857	ENSEBUG00000003170	snrpd1	94	92.857	Eptatretus_burgeri
ENSHBUG00000003236	snrpd1	94	96.429	ENSEASG00005002433	SNRPD1	100	96.429	Equus_asinus_asinus
ENSHBUG00000003236	snrpd1	94	96.429	ENSECAG00000014373	SNRPD1	100	96.429	Equus_caballus
ENSHBUG00000003236	snrpd1	75	95.506	ENSEEUG00000004987	SNRPD1	100	95.506	Erinaceus_europaeus
ENSHBUG00000003236	snrpd1	93	87.387	ENSELUG00000000088	snrpd1	79	97.872	Esox_lucius
ENSHBUG00000003236	snrpd1	100	96.639	ENSFCAG00000012352	SNRPD1	100	96.639	Felis_catus
ENSHBUG00000003236	snrpd1	94	96.429	ENSFALG00000002646	SNRPD1	100	96.429	Ficedula_albicollis
ENSHBUG00000003236	snrpd1	100	99.160	ENSGMOG00000015607	snrpd1	100	99.160	Gadus_morhua
ENSHBUG00000003236	snrpd1	100	96.639	ENSGALG00000041334	SNRPD1	100	96.639	Gallus_gallus
ENSHBUG00000003236	snrpd1	100	100.000	ENSGAFG00000011171	snrpd1	100	100.000	Gambusia_affinis
ENSHBUG00000003236	snrpd1	100	99.160	ENSGACG00000005201	SNRPD1	100	99.160	Gasterosteus_aculeatus
ENSHBUG00000003236	snrpd1	100	96.639	ENSGAGG00000011197	SNRPD1	100	96.639	Gopherus_agassizii
ENSHBUG00000003236	snrpd1	81	90.625	ENSGGOG00000026706	-	80	90.625	Gorilla_gorilla
ENSHBUG00000003236	snrpd1	100	96.639	ENSGGOG00000041053	SNRPD1	100	96.639	Gorilla_gorilla
ENSHBUG00000003236	snrpd1	100	96.639	ENSHGLG00000007152	SNRPD1	100	96.639	Heterocephalus_glaber_female
ENSHBUG00000003236	snrpd1	100	96.639	ENSHGLG00100008618	SNRPD1	100	96.639	Heterocephalus_glaber_male
ENSHBUG00000003236	snrpd1	100	100.000	ENSIPUG00000003576	snrpd1	100	100.000	Ictalurus_punctatus
ENSHBUG00000003236	snrpd1	100	96.639	ENSSTOG00000000485	SNRPD1	100	96.639	Ictidomys_tridecemlineatus
ENSHBUG00000003236	snrpd1	100	96.639	ENSJJAG00000017698	Snrpd1	100	96.639	Jaculus_jaculus
ENSHBUG00000003236	snrpd1	100	100.000	ENSKMAG00000005987	snrpd1	100	100.000	Kryptolebias_marmoratus
ENSHBUG00000003236	snrpd1	100	100.000	ENSLBEG00000003327	snrpd1	100	100.000	Labrus_bergylta
ENSHBUG00000003236	snrpd1	100	96.639	ENSLACG00000001955	SNRPD1	100	96.639	Latimeria_chalumnae
ENSHBUG00000003236	snrpd1	92	95.455	ENSLOCG00000002003	snrpd1	94	95.455	Lepisosteus_oculatus
ENSHBUG00000003236	snrpd1	93	94.595	ENSLAFG00000005819	SNRPD1	94	94.595	Loxodonta_africana
ENSHBUG00000003236	snrpd1	100	96.639	ENSMFAG00000042080	SNRPD1	100	96.639	Macaca_fascicularis
ENSHBUG00000003236	snrpd1	96	96.491	ENSMMUG00000003992	SNRPD1	97	96.491	Macaca_mulatta
ENSHBUG00000003236	snrpd1	100	96.639	ENSMNEG00000041296	SNRPD1	100	96.639	Macaca_nemestrina
ENSHBUG00000003236	snrpd1	100	96.639	ENSMLEG00000028659	SNRPD1	100	96.639	Mandrillus_leucophaeus
ENSHBUG00000003236	snrpd1	100	100.000	ENSMAMG00000012971	snrpd1	100	100.000	Mastacembelus_armatus
ENSHBUG00000003236	snrpd1	100	100.000	ENSMZEG00005004685	snrpd1	100	100.000	Maylandia_zebra
ENSHBUG00000003236	snrpd1	97	96.522	ENSMGAG00000011598	SNRPD1	95	96.522	Meleagris_gallopavo
ENSHBUG00000003236	snrpd1	81	79.167	ENSMAUG00000016467	-	86	79.167	Mesocricetus_auratus
ENSHBUG00000003236	snrpd1	81	79.167	ENSMAUG00000016502	-	86	79.167	Mesocricetus_auratus
ENSHBUG00000003236	snrpd1	82	90.722	ENSMAUG00000006829	-	60	94.565	Mesocricetus_auratus
ENSHBUG00000003236	snrpd1	100	96.639	ENSMICG00000044066	SNRPD1	100	96.639	Microcebus_murinus
ENSHBUG00000003236	snrpd1	100	96.639	ENSMOCG00000017367	Snrpd1	100	96.639	Microtus_ochrogaster
ENSHBUG00000003236	snrpd1	100	100.000	ENSMMOG00000019089	snrpd1	100	100.000	Mola_mola
ENSHBUG00000003236	snrpd1	100	96.639	ENSMODG00000021487	SNRPD1	100	96.639	Monodelphis_domestica
ENSHBUG00000003236	snrpd1	100	100.000	ENSMALG00000014459	snrpd1	100	100.000	Monopterus_albus
ENSHBUG00000003236	snrpd1	100	96.639	MGP_CAROLIEiJ_G0021994	Snrpd1	100	96.639	Mus_caroli
ENSHBUG00000003236	snrpd1	100	96.639	ENSMUSG00000002477	Snrpd1	100	96.639	Mus_musculus
ENSHBUG00000003236	snrpd1	100	96.639	MGP_PahariEiJ_G0018731	Snrpd1	100	96.639	Mus_pahari
ENSHBUG00000003236	snrpd1	100	96.639	MGP_SPRETEiJ_G0022910	Snrpd1	100	96.639	Mus_spretus
ENSHBUG00000003236	snrpd1	94	95.536	ENSMPUG00000020041	-	94	95.536	Mustela_putorius_furo
ENSHBUG00000003236	snrpd1	98	94.872	ENSMPUG00000005567	-	100	94.872	Mustela_putorius_furo
ENSHBUG00000003236	snrpd1	79	94.681	ENSMLUG00000009124	SNRPD1	73	94.681	Myotis_lucifugus
ENSHBUG00000003236	snrpd1	100	96.639	ENSNGAG00000023946	Snrpd1	100	96.639	Nannospalax_galili
ENSHBUG00000003236	snrpd1	79	100.000	ENSNBRG00000012119	snrpd1	95	98.261	Neolamprologus_brichardi
ENSHBUG00000003236	snrpd1	100	94.118	ENSNLEG00000031430	SNRPD1	100	94.118	Nomascus_leucogenys
ENSHBUG00000003236	snrpd1	100	96.639	ENSODEG00000005764	SNRPD1	100	96.639	Octodon_degus
ENSHBUG00000003236	snrpd1	100	100.000	ENSONIG00000002486	snrpd1	100	100.000	Oreochromis_niloticus
ENSHBUG00000003236	snrpd1	82	86.735	ENSOANG00000004638	-	82	86.735	Ornithorhynchus_anatinus
ENSHBUG00000003236	snrpd1	94	95.536	ENSOCUG00000014399	-	94	95.536	Oryctolagus_cuniculus
ENSHBUG00000003236	snrpd1	98	94.872	ENSOCUG00000023761	-	100	94.872	Oryctolagus_cuniculus
ENSHBUG00000003236	snrpd1	94	100.000	ENSORLG00000012516	snrpd1	100	100.000	Oryzias_latipes
ENSHBUG00000003236	snrpd1	100	100.000	ENSORLG00020005743	snrpd1	100	100.000	Oryzias_latipes_hni
ENSHBUG00000003236	snrpd1	100	100.000	ENSORLG00015013402	snrpd1	100	100.000	Oryzias_latipes_hsok
ENSHBUG00000003236	snrpd1	100	100.000	ENSOMEG00000011571	snrpd1	100	100.000	Oryzias_melastigma
ENSHBUG00000003236	snrpd1	100	93.277	ENSOGAG00000007833	SNRPD1	100	93.277	Otolemur_garnettii
ENSHBUG00000003236	snrpd1	81	95.833	ENSOARG00000003413	-	72	95.833	Ovis_aries
ENSHBUG00000003236	snrpd1	100	96.639	ENSPPAG00000042593	SNRPD1	100	96.639	Pan_paniscus
ENSHBUG00000003236	snrpd1	100	96.639	ENSPPRG00000002399	SNRPD1	100	96.639	Panthera_pardus
ENSHBUG00000003236	snrpd1	94	70.536	ENSPPRG00000005009	-	92	70.536	Panthera_pardus
ENSHBUG00000003236	snrpd1	96	96.491	ENSPTIG00000013206	SNRPD1	100	96.491	Panthera_tigris_altaica
ENSHBUG00000003236	snrpd1	86	90.196	ENSPTRG00000050159	-	87	90.196	Pan_troglodytes
ENSHBUG00000003236	snrpd1	100	96.639	ENSPTRG00000009909	SNRPD1	100	96.639	Pan_troglodytes
ENSHBUG00000003236	snrpd1	100	96.639	ENSPANG00000023478	SNRPD1	100	96.639	Papio_anubis
ENSHBUG00000003236	snrpd1	100	98.319	ENSPKIG00000003985	SNRPD1	100	98.319	Paramormyrops_kingsleyae
ENSHBUG00000003236	snrpd1	94	99.107	ENSPKIG00000021610	snrpd1	100	99.107	Paramormyrops_kingsleyae
ENSHBUG00000003236	snrpd1	100	100.000	ENSPMGG00000001862	snrpd1	100	100.000	Periophthalmus_magnuspinnatus
ENSHBUG00000003236	snrpd1	100	96.639	ENSPEMG00000014773	-	100	96.639	Peromyscus_maniculatus_bairdii
ENSHBUG00000003236	snrpd1	86	82.692	ENSPMAG00000003938	-	85	82.692	Petromyzon_marinus
ENSHBUG00000003236	snrpd1	100	96.639	ENSPCIG00000020320	SNRPD1	100	96.639	Phascolarctos_cinereus
ENSHBUG00000003236	snrpd1	100	94.958	ENSPFOG00000012448	SNRPD1	100	94.958	Poecilia_formosa
ENSHBUG00000003236	snrpd1	100	94.958	ENSPLAG00000006738	snrpd1	100	94.958	Poecilia_latipinna
ENSHBUG00000003236	snrpd1	100	94.958	ENSPMEG00000021942	snrpd1	100	94.958	Poecilia_mexicana
ENSHBUG00000003236	snrpd1	100	100.000	ENSPREG00000007094	snrpd1	100	100.000	Poecilia_reticulata
ENSHBUG00000003236	snrpd1	100	96.639	ENSPPYG00000025874	SNRPD1	100	96.639	Pongo_abelii
ENSHBUG00000003236	snrpd1	100	96.639	ENSPCOG00000013327	SNRPD1	100	96.639	Propithecus_coquereli
ENSHBUG00000003236	snrpd1	100	96.639	ENSPVAG00000005511	SNRPD1	80	96.639	Pteropus_vampyrus
ENSHBUG00000003236	snrpd1	98	99.502	ENSPNYG00000010941	snrpd1	99	99.502	Pundamilia_nyererei
ENSHBUG00000003236	snrpd1	100	98.319	ENSPNAG00000017824	snrpd1	100	98.319	Pygocentrus_nattereri
ENSHBUG00000003236	snrpd1	100	96.639	ENSRNOG00000013714	Snrpd1	100	96.639	Rattus_norvegicus
ENSHBUG00000003236	snrpd1	100	96.639	ENSRBIG00000022996	SNRPD1	100	96.639	Rhinopithecus_bieti
ENSHBUG00000003236	snrpd1	100	96.639	ENSRROG00000027640	SNRPD1	100	96.639	Rhinopithecus_roxellana
ENSHBUG00000003236	snrpd1	100	96.639	ENSSBOG00000020998	SNRPD1	100	96.639	Saimiri_boliviensis_boliviensis
ENSHBUG00000003236	snrpd1	100	96.639	ENSSHAG00000011791	SNRPD1	100	96.639	Sarcophilus_harrisii
ENSHBUG00000003236	snrpd1	100	99.160	ENSSFOG00015008809	-	100	99.160	Scleropages_formosus
ENSHBUG00000003236	snrpd1	100	99.160	ENSSFOG00015022253	-	100	99.160	Scleropages_formosus
ENSHBUG00000003236	snrpd1	100	99.160	ENSSMAG00000008765	snrpd1	100	99.160	Scophthalmus_maximus
ENSHBUG00000003236	snrpd1	97	98.276	ENSSDUG00000010521	snrpd1	98	98.276	Seriola_dumerili
ENSHBUG00000003236	snrpd1	100	100.000	ENSSLDG00000011858	snrpd1	100	100.000	Seriola_lalandi_dorsalis
ENSHBUG00000003236	snrpd1	56	97.015	ENSSARG00000004271	SNRPD1	100	97.015	Sorex_araneus
ENSHBUG00000003236	snrpd1	100	96.639	ENSSPUG00000002824	SNRPD1	100	96.639	Sphenodon_punctatus
ENSHBUG00000003236	snrpd1	94	100.000	ENSSPAG00000015229	snrpd1	100	100.000	Stegastes_partitus
ENSHBUG00000003236	snrpd1	100	96.639	ENSSSCG00000003701	SNRPD1	100	96.639	Sus_scrofa
ENSHBUG00000003236	snrpd1	97	96.522	ENSTGUG00000005095	SNRPD1	97	96.522	Taeniopygia_guttata
ENSHBUG00000003236	snrpd1	94	98.214	ENSTRUG00000008977	snrpd1	100	98.214	Takifugu_rubripes
ENSHBUG00000003236	snrpd1	87	96.117	ENSTNIG00000001224	snrpd1	99	96.117	Tetraodon_nigroviridis
ENSHBUG00000003236	snrpd1	68	95.062	ENSTBEG00000013776	SNRPD1	92	95.062	Tupaia_belangeri
ENSHBUG00000003236	snrpd1	97	96.522	ENSTTRG00000002654	SNRPD1	100	96.522	Tursiops_truncatus
ENSHBUG00000003236	snrpd1	96	96.491	ENSUAMG00000013431	SNRPD1	97	96.491	Ursus_americanus
ENSHBUG00000003236	snrpd1	100	96.639	ENSUMAG00000019740	SNRPD1	100	96.639	Ursus_maritimus
ENSHBUG00000003236	snrpd1	100	96.639	ENSVPAG00000010056	SNRPD1	80	96.639	Vicugna_pacos
ENSHBUG00000003236	snrpd1	94	96.429	ENSVVUG00000004009	SNRPD1	100	96.429	Vulpes_vulpes
ENSHBUG00000003236	snrpd1	94	94.643	ENSXETG00000027354	snrpd1	94	94.643	Xenopus_tropicalis
ENSHBUG00000003236	snrpd1	100	100.000	ENSXCOG00000020108	snrpd1	100	100.000	Xiphophorus_couchianus
ENSHBUG00000003236	snrpd1	100	100.000	ENSXMAG00000003368	snrpd1	100	100.000	Xiphophorus_maculatus