EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000003520 (Gene tree)
Gene ID: 102309522
Gene Symbol: rbm47
Alias: si:ch211-241e15.2|wu:fj94a03
Full Name: RNA binding motif protein 47
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 37683 bases
Position: chrJH425416.1:839414-877096
Accession: 102309522
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000002298	RRM_1	PF00076.22	1.4e-40	1	3
ENSHBUP00000002298	RRM_1	PF00076.22	1.4e-40	2	3
ENSHBUP00000002298	RRM_1	PF00076.22	1.4e-40	3	3
ENSHBUP00000022957	RRM_1	PF00076.22	2.3e-40	1	3
ENSHBUP00000022957	RRM_1	PF00076.22	2.3e-40	2	3
ENSHBUP00000022957	RRM_1	PF00076.22	2.3e-40	3	3
ENSHBUP00000002308	RRM_1	PF00076.22	2.6e-40	1	3
ENSHBUP00000002308	RRM_1	PF00076.22	2.6e-40	2	3
ENSHBUP00000002308	RRM_1	PF00076.22	2.6e-40	3	3
ENSHBUP00000002313	RRM_1	PF00076.22	2.6e-40	1	3
ENSHBUP00000002313	RRM_1	PF00076.22	2.6e-40	2	3
ENSHBUP00000002313	RRM_1	PF00076.22	2.6e-40	3	3
ENSHBUP00000022955	RRM_1	PF00076.22	2.6e-40	1	3
ENSHBUP00000022955	RRM_1	PF00076.22	2.6e-40	2	3
ENSHBUP00000022955	RRM_1	PF00076.22	2.6e-40	3	3
ENSHBUP00000022969	RRM_1	PF00076.22	2.6e-40	1	3
ENSHBUP00000022969	RRM_1	PF00076.22	2.6e-40	2	3
ENSHBUP00000022969	RRM_1	PF00076.22	2.6e-40	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000012302	-	5364	XM_005928254	ENSHBUP00000002313	618 (aa)	XP_005928316	UPI0003BD66E9
ENSHBUT00000012330	-	5412	XM_014335472	ENSHBUP00000022957	610 (aa)	XP_014190958	UPI0003BCEE31
ENSHBUT00000012317	-	5374	XM_005928256	ENSHBUP00000002308	618 (aa)	XP_005928318	UPI0003BD66E9
ENSHBUT00000012307	-	5209	XM_005928257	ENSHBUP00000022969	618 (aa)	XP_005928319	UPI0003BD66E9
ENSHBUT00000012341	-	5202	XM_014335475	ENSHBUP00000002298	540 (aa)	XP_014190961	UPI0003BD5CCD
ENSHBUT00000012328	-	5436	XM_005928255	ENSHBUP00000022955	618 (aa)	XP_005928317	UPI0003BD66E9

Gene Model

Click here to download ENSHBUG00000003520's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000003520's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000003520	rbm47	55	53.311	ENSHBUG00000001944	syncrip	67	45.913
ENSHBUG00000003520	rbm47	55	53.642	ENSHBUG00000022652	syncripl	77	44.787
ENSHBUG00000003520	rbm47	53	67.944	ENSHBUG00000009609	rbm46	64	69.686
ENSHBUG00000003520	rbm47	56	54.575	ENSHBUG00000019998	hnrnpr	68	45.561
ENSHBUG00000003520	rbm47	56	71.617	ENSHBUG00000021959	a1cf	87	52.852

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000003520	rbm47	95	85.311	ENSG00000163694	RBM47	100	82.687	Homo_sapiens
ENSHBUG00000003520	rbm47	100	94.344	ENSAPOG00000011062	rbm47	100	94.344	Acanthochromis_polyacanthus
ENSHBUG00000003520	rbm47	94	84.789	ENSAMEG00000009672	RBM47	100	76.020	Ailuropoda_melanoleuca
ENSHBUG00000003520	rbm47	100	94.098	ENSACIG00000011531	rbm47	100	94.098	Amphilophus_citrinellus
ENSHBUG00000003520	rbm47	100	94.087	ENSAOCG00000022245	rbm47	100	94.087	Amphiprion_ocellaris
ENSHBUG00000003520	rbm47	100	94.087	ENSAPEG00000018304	rbm47	100	94.087	Amphiprion_percula
ENSHBUG00000003520	rbm47	100	95.090	ENSATEG00000018400	rbm47	100	93.548	Anabas_testudineus
ENSHBUG00000003520	rbm47	100	82.663	ENSAPLG00000013974	RBM47	100	75.407	Anas_platyrhynchos
ENSHBUG00000003520	rbm47	100	80.103	ENSACAG00000011833	RBM47	100	75.367	Anolis_carolinensis
ENSHBUG00000003520	rbm47	100	81.395	ENSANAG00000029440	RBM47	100	82.429	Aotus_nancymaae
ENSHBUG00000003520	rbm47	100	100.000	ENSACLG00000016902	rbm47	100	100.000	Astatotilapia_calliptera
ENSHBUG00000003520	rbm47	100	87.113	ENSAMXG00000021794	rbm47	100	87.371	Astyanax_mexicanus
ENSHBUG00000003520	rbm47	100	81.186	ENSBTAG00000002356	RBM47	100	76.183	Bos_taurus
ENSHBUG00000003520	rbm47	95	85.915	ENSCJAG00000019385	RBM47	100	82.429	Callithrix_jacchus
ENSHBUG00000003520	rbm47	94	84.986	ENSCAFG00000015898	RBM47	100	75.327	Canis_familiaris
ENSHBUG00000003520	rbm47	78	84.986	ENSCAFG00020010558	RBM47	94	81.137	Canis_lupus_dingo
ENSHBUG00000003520	rbm47	100	81.186	ENSCHIG00000026214	RBM47	100	76.183	Capra_hircus
ENSHBUG00000003520	rbm47	85	88.053	ENSTSYG00000033612	RBM47	93	88.053	Carlito_syrichta
ENSHBUG00000003520	rbm47	100	73.834	ENSCAPG00000008426	RBM47	100	73.834	Cavia_aperea
ENSHBUG00000003520	rbm47	100	81.654	ENSCPOG00000014100	RBM47	100	82.687	Cavia_porcellus
ENSHBUG00000003520	rbm47	100	82.732	ENSCCAG00000030129	-	100	82.732	Cebus_capucinus
ENSHBUG00000003520	rbm47	99	55.700	ENSCCAG00000024397	-	99	54.560	Cebus_capucinus
ENSHBUG00000003520	rbm47	95	85.311	ENSCATG00000042064	RBM47	100	82.687	Cercocebus_atys
ENSHBUG00000003520	rbm47	95	86.197	ENSCLAG00000001684	RBM47	100	82.687	Chinchilla_lanigera
ENSHBUG00000003520	rbm47	94	85.311	ENSCSAG00000017060	RBM47	100	76.634	Chlorocebus_sabaeus
ENSHBUG00000003520	rbm47	72	88.235	ENSCHOG00000011731	RBM47	88	76.149	Choloepus_hoffmanni
ENSHBUG00000003520	rbm47	100	84.536	ENSCPBG00000013831	RBM47	100	77.561	Chrysemys_picta_bellii
ENSHBUG00000003520	rbm47	95	86.197	ENSCANG00000019997	RBM47	100	82.732	Colobus_angolensis_palliatus
ENSHBUG00000003520	rbm47	100	76.093	ENSCGRG00001020102	-	100	77.635	Cricetulus_griseus_chok1gshd
ENSHBUG00000003520	rbm47	100	81.186	ENSCGRG00001000623	-	100	82.216	Cricetulus_griseus_chok1gshd
ENSHBUG00000003520	rbm47	100	79.494	ENSCGRG00000007762	-	100	77.059	Cricetulus_griseus_crigri
ENSHBUG00000003520	rbm47	100	75.835	ENSCGRG00000014760	-	100	77.378	Cricetulus_griseus_crigri
ENSHBUG00000003520	rbm47	95	90.328	ENSCSEG00000004545	rbm47	100	87.908	Cynoglossus_semilaevis
ENSHBUG00000003520	rbm47	100	92.545	ENSCVAG00000020144	rbm47	100	92.545	Cyprinodon_variegatus
ENSHBUG00000003520	rbm47	100	82.630	ENSDARG00000061985	rbm47	100	81.981	Danio_rerio
ENSHBUG00000003520	rbm47	94	86.798	ENSDNOG00000046854	RBM47	100	75.693	Dasypus_novemcinctus
ENSHBUG00000003520	rbm47	100	81.330	ENSDORG00000010144	Rbm47	100	76.299	Dipodomys_ordii
ENSHBUG00000003520	rbm47	100	79.487	ENSETEG00000009194	RBM47	100	76.585	Echinops_telfairi
ENSHBUG00000003520	rbm47	93	58.904	ENSEBUG00000011912	rbm47	98	58.249	Eptatretus_burgeri
ENSHBUG00000003520	rbm47	94	85.955	ENSEASG00005008443	RBM47	100	76.183	Equus_asinus_asinus
ENSHBUG00000003520	rbm47	94	85.955	ENSECAG00000004400	RBM47	100	76.183	Equus_caballus
ENSHBUG00000003520	rbm47	71	88.095	ENSEEUG00000001194	RBM47	75	81.405	Erinaceus_europaeus
ENSHBUG00000003520	rbm47	100	88.579	ENSELUG00000006148	rbm47	100	88.579	Esox_lucius
ENSHBUG00000003520	rbm47	94	84.789	ENSFCAG00000012399	RBM47	100	76.144	Felis_catus
ENSHBUG00000003520	rbm47	100	83.763	ENSFALG00000002861	RBM47	100	78.261	Ficedula_albicollis
ENSHBUG00000003520	rbm47	100	80.620	ENSFDAG00000016326	RBM47	100	80.620	Fukomys_damarensis
ENSHBUG00000003520	rbm47	100	92.228	ENSFHEG00000007938	rbm47	100	89.015	Fundulus_heteroclitus
ENSHBUG00000003520	rbm47	100	87.310	ENSGMOG00000014802	rbm47	100	87.310	Gadus_morhua
ENSHBUG00000003520	rbm47	71	83.805	ENSGALG00000014267	RBM47	100	83.846	Gallus_gallus
ENSHBUG00000003520	rbm47	71	89.351	ENSGAFG00000020571	rbm47	98	89.378	Gambusia_affinis
ENSHBUG00000003520	rbm47	100	89.414	ENSGACG00000016223	rbm47	100	90.746	Gasterosteus_aculeatus
ENSHBUG00000003520	rbm47	100	84.536	ENSGAGG00000020051	RBM47	100	77.561	Gopherus_agassizii
ENSHBUG00000003520	rbm47	95	85.311	ENSGGOG00000001367	RBM47	100	82.687	Gorilla_gorilla
ENSHBUG00000003520	rbm47	100	61.439	ENSHGLG00000016914	RBM47	100	78.235	Heterocephalus_glaber_female
ENSHBUG00000003520	rbm47	100	81.912	ENSHGLG00100014028	-	100	81.912	Heterocephalus_glaber_male
ENSHBUG00000003520	rbm47	100	68.791	ENSHGLG00100003071	-	100	68.464	Heterocephalus_glaber_male
ENSHBUG00000003520	rbm47	99	93.573	ENSHCOG00000002074	rbm47	99	93.573	Hippocampus_comes
ENSHBUG00000003520	rbm47	100	88.402	ENSIPUG00000004743	rbm47	100	88.402	Ictalurus_punctatus
ENSHBUG00000003520	rbm47	94	85.070	ENSSTOG00000004727	RBM47	100	82.687	Ictidomys_tridecemlineatus
ENSHBUG00000003520	rbm47	94	86.761	ENSJJAG00000013823	Rbm47	100	76.307	Jaculus_jaculus
ENSHBUG00000003520	rbm47	100	91.282	ENSKMAG00000000084	rbm47	100	92.051	Kryptolebias_marmoratus
ENSHBUG00000003520	rbm47	100	92.545	ENSLBEG00000008436	rbm47	100	92.443	Labrus_bergylta
ENSHBUG00000003520	rbm47	94	85.600	ENSLACG00000007196	RBM47	100	77.325	Latimeria_chalumnae
ENSHBUG00000003520	rbm47	95	83.821	ENSLOCG00000012966	rbm47	95	79.772	Lepisosteus_oculatus
ENSHBUG00000003520	rbm47	100	80.103	ENSLAFG00000011998	RBM47	100	76.307	Loxodonta_africana
ENSHBUG00000003520	rbm47	95	85.311	ENSMFAG00000037967	RBM47	100	82.687	Macaca_fascicularis
ENSHBUG00000003520	rbm47	94	85.311	ENSMMUG00000012036	RBM47	100	80.000	Macaca_mulatta
ENSHBUG00000003520	rbm47	95	85.028	ENSMNEG00000040774	RBM47	100	82.990	Macaca_nemestrina
ENSHBUG00000003520	rbm47	95	88.095	ENSMLEG00000041432	RBM47	100	83.792	Mandrillus_leucophaeus
ENSHBUG00000003520	rbm47	100	95.596	ENSMAMG00000019143	rbm47	100	95.596	Mastacembelus_armatus
ENSHBUG00000003520	rbm47	100	100.000	ENSMZEG00005023659	rbm47	100	99.676	Maylandia_zebra
ENSHBUG00000003520	rbm47	100	83.763	ENSMGAG00000012226	RBM47	100	77.724	Meleagris_gallopavo
ENSHBUG00000003520	rbm47	100	80.720	ENSMAUG00000006493	Rbm47	100	81.748	Mesocricetus_auratus
ENSHBUG00000003520	rbm47	94	82.621	ENSMICG00000026417	RBM47	100	80.103	Microcebus_murinus
ENSHBUG00000003520	rbm47	100	80.928	ENSMOCG00000021170	Rbm47	100	81.959	Microtus_ochrogaster
ENSHBUG00000003520	rbm47	100	92.308	ENSMMOG00000007260	rbm47	100	92.144	Mola_mola
ENSHBUG00000003520	rbm47	100	78.811	ENSMODG00000020561	-	100	71.242	Monodelphis_domestica
ENSHBUG00000003520	rbm47	57	78.481	ENSMODG00000015426	-	98	78.481	Monodelphis_domestica
ENSHBUG00000003520	rbm47	100	83.333	ENSMODG00000007003	RBM47	100	76.634	Monodelphis_domestica
ENSHBUG00000003520	rbm47	100	93.540	ENSMALG00000005167	rbm47	100	93.540	Monopterus_albus
ENSHBUG00000003520	rbm47	100	79.897	MGP_CAROLIEiJ_G0027258	Rbm47	100	80.928	Mus_caroli
ENSHBUG00000003520	rbm47	100	79.897	ENSMUSG00000070780	Rbm47	100	80.928	Mus_musculus
ENSHBUG00000003520	rbm47	100	80.155	MGP_PahariEiJ_G0017040	Rbm47	100	81.186	Mus_pahari
ENSHBUG00000003520	rbm47	100	79.897	MGP_SPRETEiJ_G0028253	Rbm47	100	80.928	Mus_spretus
ENSHBUG00000003520	rbm47	94	85.634	ENSMPUG00000006177	RBM47	94	75.980	Mustela_putorius_furo
ENSHBUG00000003520	rbm47	100	82.005	ENSMLUG00000000889	RBM47	100	75.407	Myotis_lucifugus
ENSHBUG00000003520	rbm47	100	82.216	ENSNGAG00000003325	Rbm47	100	76.020	Nannospalax_galili
ENSHBUG00000003520	rbm47	100	99.344	ENSNBRG00000015092	rbm47	100	99.344	Neolamprologus_brichardi
ENSHBUG00000003520	rbm47	95	85.311	ENSNLEG00000017151	RBM47	100	82.687	Nomascus_leucogenys
ENSHBUG00000003520	rbm47	65	87.324	ENSMEUG00000009516	-	99	80.425	Notamacropus_eugenii
ENSHBUG00000003520	rbm47	86	86.777	ENSOPRG00000016507	-	75	86.777	Ochotona_princeps
ENSHBUG00000003520	rbm47	94	84.789	ENSODEG00000004873	RBM47	100	76.634	Octodon_degus
ENSHBUG00000003520	rbm47	100	96.737	ENSONIG00000009061	rbm47	100	96.737	Oreochromis_niloticus
ENSHBUG00000003520	rbm47	100	81.980	ENSOANG00000008978	RBM47	100	75.817	Ornithorhynchus_anatinus
ENSHBUG00000003520	rbm47	100	80.620	ENSOCUG00000012034	RBM47	100	75.980	Oryctolagus_cuniculus
ENSHBUG00000003520	rbm47	100	91.176	ENSORLG00000005847	rbm47	100	93.798	Oryzias_latipes
ENSHBUG00000003520	rbm47	100	91.013	ENSORLG00020005154	rbm47	100	93.798	Oryzias_latipes_hni
ENSHBUG00000003520	rbm47	100	94.057	ENSORLG00015000066	rbm47	100	94.057	Oryzias_latipes_hsok
ENSHBUG00000003520	rbm47	100	93.782	ENSOMEG00000010730	rbm47	100	90.998	Oryzias_melastigma
ENSHBUG00000003520	rbm47	94	85.634	ENSOGAG00000029367	-	100	76.307	Otolemur_garnettii
ENSHBUG00000003520	rbm47	94	79.155	ENSOGAG00000025193	-	100	69.608	Otolemur_garnettii
ENSHBUG00000003520	rbm47	100	70.103	ENSOARG00000012711	RBM47	100	68.730	Ovis_aries
ENSHBUG00000003520	rbm47	94	85.311	ENSPPAG00000029763	RBM47	96	81.841	Pan_paniscus
ENSHBUG00000003520	rbm47	95	85.634	ENSPPRG00000012873	RBM47	100	82.171	Panthera_pardus
ENSHBUG00000003520	rbm47	84	75.147	ENSPTIG00000017046	RBM47	100	74.560	Panthera_tigris_altaica
ENSHBUG00000003520	rbm47	95	85.311	ENSPTRG00000016006	RBM47	100	82.687	Pan_troglodytes
ENSHBUG00000003520	rbm47	95	85.311	ENSPANG00000005980	RBM47	100	82.687	Papio_anubis
ENSHBUG00000003520	rbm47	100	86.788	ENSPKIG00000013431	RBM47	98	86.788	Paramormyrops_kingsleyae
ENSHBUG00000003520	rbm47	96	88.579	ENSPKIG00000005037	rbm47	100	85.492	Paramormyrops_kingsleyae
ENSHBUG00000003520	rbm47	88	84.278	ENSPSIG00000017516	RBM47	97	79.304	Pelodiscus_sinensis
ENSHBUG00000003520	rbm47	94	90.957	ENSPMGG00000018540	rbm47	100	87.705	Periophthalmus_magnuspinnatus
ENSHBUG00000003520	rbm47	100	80.928	ENSPEMG00000011088	Rbm47	100	81.959	Peromyscus_maniculatus_bairdii
ENSHBUG00000003520	rbm47	100	89.394	ENSPFOG00000007997	rbm47	100	88.762	Poecilia_formosa
ENSHBUG00000003520	rbm47	100	89.141	ENSPLAG00000002072	rbm47	100	89.091	Poecilia_latipinna
ENSHBUG00000003520	rbm47	100	90.488	ENSPMEG00000017492	rbm47	100	90.488	Poecilia_mexicana
ENSHBUG00000003520	rbm47	100	90.488	ENSPREG00000008456	rbm47	100	90.488	Poecilia_reticulata
ENSHBUG00000003520	rbm47	94	75.070	ENSPPYG00000014688	RBM47	98	69.402	Pongo_abelii
ENSHBUG00000003520	rbm47	88	78.680	ENSPCAG00000011879	RBM47	81	81.796	Procavia_capensis
ENSHBUG00000003520	rbm47	94	84.986	ENSPCOG00000023451	RBM47	100	81.395	Propithecus_coquereli
ENSHBUG00000003520	rbm47	94	84.874	ENSPVAG00000003812	RBM47	100	76.221	Pteropus_vampyrus
ENSHBUG00000003520	rbm47	100	99.836	ENSPNYG00000022868	rbm47	100	99.836	Pundamilia_nyererei
ENSHBUG00000003520	rbm47	100	83.333	ENSPNAG00000007940	rbm47	100	88.175	Pygocentrus_nattereri
ENSHBUG00000003520	rbm47	100	80.256	ENSRNOG00000002408	Rbm47	100	75.856	Rattus_norvegicus
ENSHBUG00000003520	rbm47	95	86.236	ENSRBIG00000039601	RBM47	100	82.732	Rhinopithecus_bieti
ENSHBUG00000003520	rbm47	95	86.236	ENSRROG00000044696	RBM47	100	82.732	Rhinopithecus_roxellana
ENSHBUG00000003520	rbm47	100	72.386	ENSSBOG00000028475	RBM47	97	82.519	Saimiri_boliviensis_boliviensis
ENSHBUG00000003520	rbm47	100	82.946	ENSSHAG00000017576	RBM47	100	82.946	Sarcophilus_harrisii
ENSHBUG00000003520	rbm47	100	85.530	ENSSFOG00015012445	rbm47	100	85.788	Scleropages_formosus
ENSHBUG00000003520	rbm47	98	78.109	ENSSFOG00015024101	RBM47	99	82.258	Scleropages_formosus
ENSHBUG00000003520	rbm47	100	93.023	ENSSMAG00000009744	rbm47	100	93.165	Scophthalmus_maximus
ENSHBUG00000003520	rbm47	100	94.148	ENSSDUG00000022684	rbm47	100	93.291	Seriola_dumerili
ENSHBUG00000003520	rbm47	100	93.639	ENSSLDG00000003109	rbm47	100	93.639	Seriola_lalandi_dorsalis
ENSHBUG00000003520	rbm47	84	78.091	ENSSARG00000001735	RBM47	75	80.260	Sorex_araneus
ENSHBUG00000003520	rbm47	100	82.990	ENSSPUG00000007515	RBM47	100	82.990	Sphenodon_punctatus
ENSHBUG00000003520	rbm47	100	94.602	ENSSPAG00000001257	rbm47	100	94.602	Stegastes_partitus
ENSHBUG00000003520	rbm47	95	85.196	ENSSSCG00000008796	RBM47	100	75.856	Sus_scrofa
ENSHBUG00000003520	rbm47	100	83.887	ENSTGUG00000008705	RBM47	100	78.571	Taeniopygia_guttata
ENSHBUG00000003520	rbm47	100	87.377	ENSTRUG00000014050	rbm47	100	87.377	Takifugu_rubripes
ENSHBUG00000003520	rbm47	100	90.344	ENSTNIG00000006127	rbm47	100	90.344	Tetraodon_nigroviridis
ENSHBUG00000003520	rbm47	81	83.616	ENSTBEG00000001607	RBM47	76	80.362	Tupaia_belangeri
ENSHBUG00000003520	rbm47	94	85.955	ENSTTRG00000002839	RBM47	100	75.856	Tursiops_truncatus
ENSHBUG00000003520	rbm47	94	84.789	ENSUAMG00000021346	RBM47	100	76.144	Ursus_americanus
ENSHBUG00000003520	rbm47	53	83.333	ENSVPAG00000000641	-	56	75.796	Vicugna_pacos
ENSHBUG00000003520	rbm47	94	85.836	ENSVVUG00000014774	RBM47	100	75.490	Vulpes_vulpes
ENSHBUG00000003520	rbm47	100	83.077	ENSXETG00000012802	rbm47	100	75.772	Xenopus_tropicalis
ENSHBUG00000003520	rbm47	100	87.407	ENSXCOG00000000780	rbm47	100	89.351	Xiphophorus_couchianus
ENSHBUG00000003520	rbm47	100	90.932	ENSXMAG00000009874	rbm47	100	90.932	Xiphophorus_maculatus