EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000003726 (Gene tree)
Gene ID: 102294434
Gene Symbol: smg7
Alias: fa99h10|wu:fa99h10
Full Name: SMG7%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 22168 bases
Position: chrJH425788.1:417230-439397
Accession: 102294434
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000023033	EST1	PF10374.9	4.9e-27	1	1
ENSHBUP00000002386	EST1	PF10374.9	6.5e-27	1	1
ENSHBUP00000023002	EST1	PF10374.9	1.6e-26	1	1
ENSHBUP00000002430	EST1	PF10374.9	1.7e-25	1	1
ENSHBUP00000002422	EST1	PF10374.9	1.8e-25	1	1
ENSHBUP00000002386	EST1_DNA_bind	PF10373.9	3.7e-48	1	1
ENSHBUP00000023033	EST1_DNA_bind	PF10373.9	3.9e-48	1	1
ENSHBUP00000002430	EST1_DNA_bind	PF10373.9	4.2e-48	1	1
ENSHBUP00000002422	EST1_DNA_bind	PF10373.9	4.4e-48	1	1
ENSHBUP00000023002	EST1_DNA_bind	PF10373.9	5.4e-42	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000012103	-	8596	-	ENSHBUP00000002430	1163 (aa)	-	-
ENSHBUT00000012177	-	8359	-	ENSHBUP00000002386	1084 (aa)	-	-
ENSHBUT00000012224	-	3252	-	ENSHBUP00000023002	1083 (aa)	-	-
ENSHBUT00000012119	-	8462	XM_005945799	ENSHBUP00000002422	1187 (aa)	XP_005945861	UPI0003BD506A
ENSHBUT00000012137	-	8446	-	ENSHBUP00000023033	1113 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000003726's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000003726's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000003726	smg7	97	72.589	ENSG00000116698	SMG7	86	94.340	Homo_sapiens
ENSHBUG00000003726	smg7	88	94.196	ENSAPOG00000009611	smg7	94	94.196	Acanthochromis_polyacanthus
ENSHBUG00000003726	smg7	94	71.574	ENSAMEG00000002357	SMG7	100	65.110	Ailuropoda_melanoleuca
ENSHBUG00000003726	smg7	97	86.642	ENSACIG00000015152	smg7	100	87.662	Amphilophus_citrinellus
ENSHBUG00000003726	smg7	100	90.879	ENSAOCG00000013538	smg7	100	92.887	Amphiprion_ocellaris
ENSHBUG00000003726	smg7	100	90.552	ENSAPEG00000007851	smg7	100	92.475	Amphiprion_percula
ENSHBUG00000003726	smg7	99	88.277	ENSATEG00000006931	smg7	100	86.928	Anabas_testudineus
ENSHBUG00000003726	smg7	93	71.500	ENSAPLG00000015811	SMG7	99	64.073	Anas_platyrhynchos
ENSHBUG00000003726	smg7	97	74.742	ENSACAG00000014989	SMG7	99	65.441	Anolis_carolinensis
ENSHBUG00000003726	smg7	95	72.589	ENSANAG00000028114	SMG7	86	93.038	Aotus_nancymaae
ENSHBUG00000003726	smg7	100	99.663	ENSACLG00000022079	smg7	100	99.663	Astatotilapia_calliptera
ENSHBUG00000003726	smg7	100	76.878	ENSAMXG00000020809	smg7	100	76.783	Astyanax_mexicanus
ENSHBUG00000003726	smg7	97	74.112	ENSBTAG00000008003	SMG7	99	64.974	Bos_taurus
ENSHBUG00000003726	smg7	96	72.589	ENSCJAG00000005135	SMG7	90	90.244	Callithrix_jacchus
ENSHBUG00000003726	smg7	97	72.081	ENSCAFG00000013276	SMG7	97	64.303	Canis_familiaris
ENSHBUG00000003726	smg7	98	72.081	ENSCAFG00020015475	SMG7	89	90.244	Canis_lupus_dingo
ENSHBUG00000003726	smg7	97	74.112	ENSCHIG00000018192	SMG7	99	64.716	Capra_hircus
ENSHBUG00000003726	smg7	98	67.485	ENSTSYG00000002667	SMG7	81	94.268	Carlito_syrichta
ENSHBUG00000003726	smg7	97	72.589	ENSCPOG00000008906	SMG7	99	63.877	Cavia_porcellus
ENSHBUG00000003726	smg7	92	73.096	ENSCCAG00000028596	SMG7	86	93.038	Cebus_capucinus
ENSHBUG00000003726	smg7	97	72.589	ENSCATG00000011063	SMG7	86	93.038	Cercocebus_atys
ENSHBUG00000003726	smg7	97	72.081	ENSCLAG00000010751	SMG7	99	64.847	Chinchilla_lanigera
ENSHBUG00000003726	smg7	97	73.096	ENSCSAG00000012654	SMG7	97	64.580	Chlorocebus_sabaeus
ENSHBUG00000003726	smg7	93	66.871	ENSCHOG00000010522	SMG7	86	66.871	Choloepus_hoffmanni
ENSHBUG00000003726	smg7	96	72.589	ENSCPBG00000015724	SMG7	99	66.475	Chrysemys_picta_bellii
ENSHBUG00000003726	smg7	94	72.589	ENSCANG00000015680	SMG7	86	93.038	Colobus_angolensis_palliatus
ENSHBUG00000003726	smg7	97	71.574	ENSCGRG00001013705	Smg7	99	64.327	Cricetulus_griseus_chok1gshd
ENSHBUG00000003726	smg7	97	71.574	ENSCGRG00000018401	Smg7	100	63.899	Cricetulus_griseus_crigri
ENSHBUG00000003726	smg7	99	81.460	ENSCVAG00000011842	smg7	100	83.744	Cyprinodon_variegatus
ENSHBUG00000003726	smg7	100	76.373	ENSDARG00000060767	smg7	100	76.694	Danio_rerio
ENSHBUG00000003726	smg7	97	71.574	ENSDORG00000007331	Smg7	99	64.268	Dipodomys_ordii
ENSHBUG00000003726	smg7	99	63.737	ENSETEG00000002654	SMG7	99	62.954	Echinops_telfairi
ENSHBUG00000003726	smg7	97	72.081	ENSEASG00005006524	SMG7	99	65.153	Equus_asinus_asinus
ENSHBUG00000003726	smg7	94	88.358	ENSECAG00000004313	SMG7	97	88.131	Equus_caballus
ENSHBUG00000003726	smg7	98	68.712	ENSEEUG00000002024	SMG7	94	63.390	Erinaceus_europaeus
ENSHBUG00000003726	smg7	100	78.430	ENSELUG00000010293	smg7	100	78.730	Esox_lucius
ENSHBUG00000003726	smg7	97	73.096	ENSFCAG00000010900	SMG7	99	71.154	Felis_catus
ENSHBUG00000003726	smg7	96	70.558	ENSFALG00000003047	SMG7	100	64.304	Ficedula_albicollis
ENSHBUG00000003726	smg7	97	72.081	ENSFDAG00000012121	SMG7	99	63.576	Fukomys_damarensis
ENSHBUG00000003726	smg7	99	81.228	ENSFHEG00000011073	smg7	98	81.239	Fundulus_heteroclitus
ENSHBUG00000003726	smg7	91	81.391	ENSGMOG00000004916	smg7	91	81.391	Gadus_morhua
ENSHBUG00000003726	smg7	93	71.500	ENSGALG00000004667	SMG7	99	64.323	Gallus_gallus
ENSHBUG00000003726	smg7	99	80.622	ENSGAFG00000019000	smg7	98	80.868	Gambusia_affinis
ENSHBUG00000003726	smg7	99	85.542	ENSGACG00000001634	smg7	99	81.957	Gasterosteus_aculeatus
ENSHBUG00000003726	smg7	97	73.096	ENSGGOG00000002342	SMG7	82	91.875	Gorilla_gorilla
ENSHBUG00000003726	smg7	96	72.081	ENSHGLG00000009353	SMG7	100	64.411	Heterocephalus_glaber_female
ENSHBUG00000003726	smg7	96	72.081	ENSHGLG00100009637	-	99	64.685	Heterocephalus_glaber_male
ENSHBUG00000003726	smg7	97	61.929	ENSHGLG00100004878	-	99	59.042	Heterocephalus_glaber_male
ENSHBUG00000003726	smg7	100	76.131	ENSIPUG00000016997	smg7	100	76.717	Ictalurus_punctatus
ENSHBUG00000003726	smg7	97	72.589	ENSSTOG00000000401	SMG7	99	64.157	Ictidomys_tridecemlineatus
ENSHBUG00000003726	smg7	97	72.081	ENSJJAG00000012351	Smg7	99	64.046	Jaculus_jaculus
ENSHBUG00000003726	smg7	91	86.139	ENSKMAG00000004900	smg7	98	86.139	Kryptolebias_marmoratus
ENSHBUG00000003726	smg7	99	85.804	ENSLBEG00000002983	smg7	100	83.820	Labrus_bergylta
ENSHBUG00000003726	smg7	55	78.894	ENSLBEG00000005220	-	75	78.894	Labrus_bergylta
ENSHBUG00000003726	smg7	98	73.604	ENSLACG00000000972	SMG7	100	68.541	Latimeria_chalumnae
ENSHBUG00000003726	smg7	99	71.193	ENSLOCG00000002010	smg7	99	71.029	Lepisosteus_oculatus
ENSHBUG00000003726	smg7	97	71.574	ENSLAFG00000008186	SMG7	99	64.374	Loxodonta_africana
ENSHBUG00000003726	smg7	97	72.589	ENSMFAG00000031653	SMG7	86	93.038	Macaca_fascicularis
ENSHBUG00000003726	smg7	97	72.589	ENSMMUG00000018458	SMG7	99	65.128	Macaca_mulatta
ENSHBUG00000003726	smg7	94	72.589	ENSMNEG00000034798	SMG7	86	93.038	Macaca_nemestrina
ENSHBUG00000003726	smg7	97	72.589	ENSMLEG00000037170	SMG7	100	65.140	Mandrillus_leucophaeus
ENSHBUG00000003726	smg7	90	86.629	ENSMAMG00000018733	smg7	86	87.288	Mastacembelus_armatus
ENSHBUG00000003726	smg7	100	99.495	ENSMZEG00005015247	smg7	100	99.495	Maylandia_zebra
ENSHBUG00000003726	smg7	99	63.580	ENSMGAG00000001561	SMG7	99	64.304	Meleagris_gallopavo
ENSHBUG00000003726	smg7	97	72.589	ENSMAUG00000019484	Smg7	99	64.244	Mesocricetus_auratus
ENSHBUG00000003726	smg7	97	72.081	ENSMICG00000007145	SMG7	81	94.231	Microcebus_murinus
ENSHBUG00000003726	smg7	97	71.574	ENSMOCG00000020748	Smg7	99	64.244	Microtus_ochrogaster
ENSHBUG00000003726	smg7	100	81.189	ENSMMOG00000001524	smg7	98	87.000	Mola_mola
ENSHBUG00000003726	smg7	94	65.672	ENSMODG00000007139	SMG7	99	64.103	Monodelphis_domestica
ENSHBUG00000003726	smg7	100	87.846	ENSMALG00000000061	smg7	94	87.843	Monopterus_albus
ENSHBUG00000003726	smg7	97	72.081	MGP_CAROLIEiJ_G0014704	Smg7	99	63.934	Mus_caroli
ENSHBUG00000003726	smg7	97	72.081	ENSMUSG00000042772	Smg7	99	64.244	Mus_musculus
ENSHBUG00000003726	smg7	97	72.081	MGP_PahariEiJ_G0027940	Smg7	99	64.657	Mus_pahari
ENSHBUG00000003726	smg7	97	72.081	MGP_SPRETEiJ_G0015511	Smg7	99	64.327	Mus_spretus
ENSHBUG00000003726	smg7	96	71.574	ENSMPUG00000011732	SMG7	97	64.381	Mustela_putorius_furo
ENSHBUG00000003726	smg7	97	71.066	ENSMLUG00000015417	SMG7	99	64.404	Myotis_lucifugus
ENSHBUG00000003726	smg7	97	70.619	ENSNGAG00000009836	Smg7	99	64.138	Nannospalax_galili
ENSHBUG00000003726	smg7	98	90.390	ENSNBRG00000024343	smg7	99	90.390	Neolamprologus_brichardi
ENSHBUG00000003726	smg7	97	72.589	ENSNLEG00000018018	SMG7	100	65.225	Nomascus_leucogenys
ENSHBUG00000003726	smg7	72	65.341	ENSMEUG00000004681	SMG7	73	65.341	Notamacropus_eugenii
ENSHBUG00000003726	smg7	98	61.963	ENSOPRG00000013942	SMG7	96	59.793	Ochotona_princeps
ENSHBUG00000003726	smg7	97	72.081	ENSODEG00000010390	SMG7	99	64.575	Octodon_degus
ENSHBUG00000003726	smg7	99	98.118	ENSONIG00000000277	smg7	98	98.118	Oreochromis_niloticus
ENSHBUG00000003726	smg7	96	73.096	ENSOANG00000000994	SMG7	100	63.803	Ornithorhynchus_anatinus
ENSHBUG00000003726	smg7	98	64.417	ENSOCUG00000005887	SMG7	92	62.252	Oryctolagus_cuniculus
ENSHBUG00000003726	smg7	100	80.117	ENSORLG00000007314	smg7	100	80.705	Oryzias_latipes
ENSHBUG00000003726	smg7	100	80.537	ENSORLG00020015779	smg7	100	81.124	Oryzias_latipes_hni
ENSHBUG00000003726	smg7	100	80.789	ENSORLG00015012289	smg7	100	80.872	Oryzias_latipes_hsok
ENSHBUG00000003726	smg7	100	80.621	ENSOMEG00000002328	smg7	100	81.376	Oryzias_melastigma
ENSHBUG00000003726	smg7	99	64.332	ENSOGAG00000003107	SMG7	95	62.972	Otolemur_garnettii
ENSHBUG00000003726	smg7	97	73.604	ENSOARG00000001352	SMG7	100	63.741	Ovis_aries
ENSHBUG00000003726	smg7	94	72.589	ENSPPAG00000031619	SMG7	89	90.798	Pan_paniscus
ENSHBUG00000003726	smg7	97	73.096	ENSPPRG00000011222	SMG7	99	65.179	Panthera_pardus
ENSHBUG00000003726	smg7	99	68.098	ENSPTIG00000007242	SMG7	100	65.450	Panthera_tigris_altaica
ENSHBUG00000003726	smg7	94	72.589	ENSPTRG00000001764	SMG7	86	93.038	Pan_troglodytes
ENSHBUG00000003726	smg7	97	72.589	ENSPANG00000004520	SMG7	99	64.685	Papio_anubis
ENSHBUG00000003726	smg7	100	71.000	ENSPKIG00000007242	smg7	100	71.500	Paramormyrops_kingsleyae
ENSHBUG00000003726	smg7	96	72.589	ENSPSIG00000012201	SMG7	100	63.772	Pelodiscus_sinensis
ENSHBUG00000003726	smg7	62	62.406	ENSPMGG00000021833	smg7	86	70.536	Periophthalmus_magnuspinnatus
ENSHBUG00000003726	smg7	98	72.081	ENSPEMG00000011315	Smg7	99	64.516	Peromyscus_maniculatus_bairdii
ENSHBUG00000003726	smg7	97	73.096	ENSPCIG00000003786	SMG7	89	93.750	Phascolarctos_cinereus
ENSHBUG00000003726	smg7	100	82.319	ENSPFOG00000019219	smg7	100	82.490	Poecilia_formosa
ENSHBUG00000003726	smg7	99	81.050	ENSPLAG00000001446	smg7	98	81.239	Poecilia_latipinna
ENSHBUG00000003726	smg7	99	81.671	ENSPMEG00000005218	smg7	99	81.859	Poecilia_mexicana
ENSHBUG00000003726	smg7	89	78.817	ENSPREG00000019039	smg7	92	79.123	Poecilia_reticulata
ENSHBUG00000003726	smg7	99	65.320	ENSPPYG00000000427	SMG7	99	64.773	Pongo_abelii
ENSHBUG00000003726	smg7	86	72.648	ENSPCAG00000008360	SMG7	86	72.648	Procavia_capensis
ENSHBUG00000003726	smg7	97	73.096	ENSPCOG00000011996	SMG7	76	94.231	Propithecus_coquereli
ENSHBUG00000003726	smg7	92	74.757	ENSPVAG00000000851	SMG7	81	74.757	Pteropus_vampyrus
ENSHBUG00000003726	smg7	100	99.410	ENSPNYG00000007643	smg7	100	99.410	Pundamilia_nyererei
ENSHBUG00000003726	smg7	100	75.957	ENSPNAG00000011374	smg7	100	76.033	Pygocentrus_nattereri
ENSHBUG00000003726	smg7	97	72.222	ENSRNOG00000027962	Smg7	100	64.831	Rattus_norvegicus
ENSHBUG00000003726	smg7	97	72.589	ENSRBIG00000036316	SMG7	100	65.140	Rhinopithecus_bieti
ENSHBUG00000003726	smg7	97	72.589	ENSRROG00000035719	SMG7	100	65.140	Rhinopithecus_roxellana
ENSHBUG00000003726	smg7	95	72.081	ENSSBOG00000023454	SMG7	88	93.168	Saimiri_boliviensis_boliviensis
ENSHBUG00000003726	smg7	99	64.763	ENSSHAG00000013147	SMG7	99	63.605	Sarcophilus_harrisii
ENSHBUG00000003726	smg7	100	74.771	ENSSFOG00015017252	smg7	100	74.319	Scleropages_formosus
ENSHBUG00000003726	smg7	100	85.269	ENSSMAG00000006067	smg7	100	86.421	Scophthalmus_maximus
ENSHBUG00000003726	smg7	96	95.862	ENSSDUG00000017543	smg7	98	89.460	Seriola_dumerili
ENSHBUG00000003726	smg7	99	63.889	ENSSPUG00000002064	SMG7	99	63.339	Sphenodon_punctatus
ENSHBUG00000003726	smg7	99	86.071	ENSSPAG00000008733	smg7	98	86.166	Stegastes_partitus
ENSHBUG00000003726	smg7	97	73.096	ENSSSCG00000015558	SMG7	99	64.905	Sus_scrofa
ENSHBUG00000003726	smg7	99	63.755	ENSTGUG00000003928	SMG7	100	64.516	Taeniopygia_guttata
ENSHBUG00000003726	smg7	98	77.665	ENSTNIG00000002802	smg7	100	73.594	Tetraodon_nigroviridis
ENSHBUG00000003726	smg7	80	68.000	ENSTBEG00000003220	SMG7	75	68.000	Tupaia_belangeri
ENSHBUG00000003726	smg7	98	67.485	ENSTTRG00000014778	SMG7	94	64.103	Tursiops_truncatus
ENSHBUG00000003726	smg7	96	62.318	ENSUAMG00000017473	SMG7	100	62.896	Ursus_americanus
ENSHBUG00000003726	smg7	94	72.081	ENSUMAG00000016389	SMG7	100	64.109	Ursus_maritimus
ENSHBUG00000003726	smg7	97	72.081	ENSVVUG00000008976	SMG7	99	70.192	Vulpes_vulpes
ENSHBUG00000003726	smg7	99	59.670	ENSXETG00000012528	smg7	99	59.587	Xenopus_tropicalis
ENSHBUG00000003726	smg7	99	80.588	ENSXMAG00000007123	smg7	98	80.923	Xiphophorus_maculatus