EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000004249 (Gene tree)
Gene ID: 102296965
Gene Symbol: UPF2
Alias: DKFZP434D222|KIAA1408|RENT2|smg-3
Full Name: UPF2%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 19152 bases
Position: chrJH425361.1:1998978-2018129
Accession: 102296965
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000023399	Upf2	PF04050.14	2.6e-31	1	1
ENSHBUP00000023405	Upf2	PF04050.14	2.9e-31	1	1
ENSHBUP00000023405	MIF4G	PF02854.19	2e-80	1	3
ENSHBUP00000023405	MIF4G	PF02854.19	2e-80	2	3
ENSHBUP00000023405	MIF4G	PF02854.19	2e-80	3	3
ENSHBUP00000023399	MIF4G	PF02854.19	2.2e-80	1	3
ENSHBUP00000023399	MIF4G	PF02854.19	2.2e-80	2	3
ENSHBUP00000023399	MIF4G	PF02854.19	2.2e-80	3	3

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000011208	UPF2-202	6086	XM_005921055	ENSHBUP00000023399	1300 (aa)	XP_005921117	UPI0003AFCEED
ENSHBUT00000011189	UPF2-201	6260	XM_005921054	ENSHBUP00000023405	1273 (aa)	XP_005921116	UPI0003BC9049

Gene Model

Click here to download ENSHBUG00000004249's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000004249's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000004249	UPF2	100	82.592	ENSG00000151461	UPF2	100	80.748	Homo_sapiens
ENSHBUG00000004249	UPF2	100	90.368	ENSAPOG00000015837	UPF2	100	90.361	Acanthochromis_polyacanthus
ENSHBUG00000004249	UPF2	100	83.125	ENSAMEG00000004586	UPF2	100	81.279	Ailuropoda_melanoleuca
ENSHBUG00000004249	UPF2	100	98.507	ENSACIG00000018078	UPF2	100	98.507	Amphilophus_citrinellus
ENSHBUG00000004249	UPF2	100	96.708	ENSAOCG00000016766	UPF2	100	96.557	Amphiprion_ocellaris
ENSHBUG00000004249	UPF2	100	96.787	ENSAPEG00000019084	UPF2	100	96.635	Amphiprion_percula
ENSHBUG00000004249	UPF2	100	96.787	ENSATEG00000021677	UPF2	99	96.787	Anabas_testudineus
ENSHBUG00000004249	UPF2	100	78.833	ENSAPLG00000010287	UPF2	90	83.492	Anas_platyrhynchos
ENSHBUG00000004249	UPF2	100	82.891	ENSACAG00000009259	UPF2	100	82.839	Anolis_carolinensis
ENSHBUG00000004249	UPF2	91	79.177	ENSANAG00000028451	UPF2	93	79.249	Aotus_nancymaae
ENSHBUG00000004249	UPF2	100	99.843	ENSACLG00000012696	UPF2	100	99.686	Astatotilapia_calliptera
ENSHBUG00000004249	UPF2	100	89.445	ENSAMXG00000013700	UPF2	99	89.367	Astyanax_mexicanus
ENSHBUG00000004249	UPF2	100	83.047	ENSBTAG00000000288	UPF2	100	81.201	Bos_taurus
ENSHBUG00000004249	UPF2	100	82.344	ENSCJAG00000020685	UPF2	100	80.889	Callithrix_jacchus
ENSHBUG00000004249	UPF2	100	83.125	ENSCAFG00000004839	UPF2	100	81.201	Canis_familiaris
ENSHBUG00000004249	UPF2	95	86.735	ENSCAFG00020005882	UPF2	99	87.755	Canis_lupus_dingo
ENSHBUG00000004249	UPF2	100	83.203	ENSCHIG00000020359	UPF2	100	81.201	Capra_hircus
ENSHBUG00000004249	UPF2	100	82.812	ENSTSYG00000000935	UPF2	97	86.932	Carlito_syrichta
ENSHBUG00000004249	UPF2	91	75.086	ENSCAPG00000016658	UPF2	95	74.659	Cavia_aperea
ENSHBUG00000004249	UPF2	99	79.874	ENSCPOG00000008809	UPF2	100	79.167	Cavia_porcellus
ENSHBUG00000004249	UPF2	100	76.131	ENSCCAG00000035991	UPF2	100	74.766	Cebus_capucinus
ENSHBUG00000004249	UPF2	100	82.748	ENSCATG00000032679	UPF2	100	80.904	Cercocebus_atys
ENSHBUG00000004249	UPF2	100	81.861	ENSCLAG00000011434	UPF2	100	81.030	Chinchilla_lanigera
ENSHBUG00000004249	UPF2	100	82.748	ENSCSAG00000013372	UPF2	100	80.904	Chlorocebus_sabaeus
ENSHBUG00000004249	UPF2	79	88.914	ENSCHOG00000000422	UPF2	81	88.914	Choloepus_hoffmanni
ENSHBUG00000004249	UPF2	100	81.548	ENSCPBG00000027823	UPF2	100	81.562	Chrysemys_picta_bellii
ENSHBUG00000004249	UPF2	79	49.852	ENSCSAVG00000007772	-	99	48.826	Ciona_savignyi
ENSHBUG00000004249	UPF2	100	77.614	ENSCANG00000040396	UPF2	100	76.209	Colobus_angolensis_palliatus
ENSHBUG00000004249	UPF2	100	82.408	ENSCGRG00001019347	Upf2	100	80.406	Cricetulus_griseus_chok1gshd
ENSHBUG00000004249	UPF2	100	82.408	ENSCGRG00000017993	Upf2	100	80.406	Cricetulus_griseus_crigri
ENSHBUG00000004249	UPF2	99	85.759	ENSCSEG00000003520	UPF2	99	85.456	Cynoglossus_semilaevis
ENSHBUG00000004249	UPF2	99	94.234	ENSCVAG00000006167	UPF2	100	93.681	Cyprinodon_variegatus
ENSHBUG00000004249	UPF2	100	82.891	ENSDNOG00000018160	UPF2	100	80.889	Dasypus_novemcinctus
ENSHBUG00000004249	UPF2	100	82.734	ENSDORG00000002478	Upf2	100	80.811	Dipodomys_ordii
ENSHBUG00000004249	UPF2	73	92.647	ENSETEG00000011583	-	62	92.647	Echinops_telfairi
ENSHBUG00000004249	UPF2	64	73.826	ENSEBUG00000012448	-	93	68.460	Eptatretus_burgeri
ENSHBUG00000004249	UPF2	100	82.174	ENSEASG00005019274	UPF2	100	81.343	Equus_asinus_asinus
ENSHBUG00000004249	UPF2	100	82.174	ENSECAG00000017022	UPF2	100	81.343	Equus_caballus
ENSHBUG00000004249	UPF2	82	75.000	ENSEEUG00000007819	UPF2	74	75.441	Erinaceus_europaeus
ENSHBUG00000004249	UPF2	100	88.837	ENSELUG00000012014	UPF2	99	89.305	Esox_lucius
ENSHBUG00000004249	UPF2	100	85.475	ENSFCAG00000005785	UPF2	100	81.045	Felis_catus
ENSHBUG00000004249	UPF2	100	83.450	ENSFALG00000001889	UPF2	98	81.655	Ficedula_albicollis
ENSHBUG00000004249	UPF2	100	81.392	ENSFDAG00000014348	UPF2	100	80.406	Fukomys_damarensis
ENSHBUG00000004249	UPF2	99	94.392	ENSFHEG00000009826	UPF2	100	93.849	Fundulus_heteroclitus
ENSHBUG00000004249	UPF2	91	90.147	ENSGMOG00000005557	UPF2	100	88.447	Gadus_morhua
ENSHBUG00000004249	UPF2	100	84.387	ENSGALG00000033772	UPF2	100	82.385	Gallus_gallus
ENSHBUG00000004249	UPF2	100	93.495	ENSGAFG00000020867	UPF2	100	92.958	Gambusia_affinis
ENSHBUG00000004249	UPF2	100	93.130	ENSGACG00000001080	UPF2	100	93.677	Gasterosteus_aculeatus
ENSHBUG00000004249	UPF2	100	82.592	ENSGAGG00000002700	UPF2	100	80.685	Gopherus_agassizii
ENSHBUG00000004249	UPF2	100	82.592	ENSGGOG00000001479	UPF2	100	80.748	Gorilla_gorilla
ENSHBUG00000004249	UPF2	100	81.470	ENSHGLG00000015176	-	100	80.640	Heterocephalus_glaber_female
ENSHBUG00000004249	UPF2	100	72.749	ENSHGLG00000003822	-	99	72.827	Heterocephalus_glaber_female
ENSHBUG00000004249	UPF2	100	79.203	ENSHGLG00100010036	UPF2	100	78.013	Heterocephalus_glaber_male
ENSHBUG00000004249	UPF2	100	91.101	ENSHCOG00000004025	UPF2	99	91.023	Hippocampus_comes
ENSHBUG00000004249	UPF2	100	87.881	ENSIPUG00000015524	UPF2	100	85.714	Ictalurus_punctatus
ENSHBUG00000004249	UPF2	100	82.812	ENSSTOG00000013075	UPF2	100	80.733	Ictidomys_tridecemlineatus
ENSHBUG00000004249	UPF2	100	79.750	ENSJJAG00000004913	Upf2	100	80.484	Jaculus_jaculus
ENSHBUG00000004249	UPF2	99	94.313	ENSKMAG00000001071	UPF2	100	94.164	Kryptolebias_marmoratus
ENSHBUG00000004249	UPF2	100	95.455	ENSLBEG00000016394	-	99	95.455	Labrus_bergylta
ENSHBUG00000004249	UPF2	80	92.654	ENSLBEG00000000728	-	94	92.564	Labrus_bergylta
ENSHBUG00000004249	UPF2	99	77.457	ENSLACG00000015945	UPF2	100	77.691	Latimeria_chalumnae
ENSHBUG00000004249	UPF2	99	88.644	ENSLOCG00000015698	UPF2	100	88.189	Lepisosteus_oculatus
ENSHBUG00000004249	UPF2	100	82.748	ENSMFAG00000043865	UPF2	100	80.904	Macaca_fascicularis
ENSHBUG00000004249	UPF2	100	82.748	ENSMMUG00000008241	UPF2	100	80.904	Macaca_mulatta
ENSHBUG00000004249	UPF2	80	83.528	ENSMNEG00000008062	UPF2	99	81.189	Macaca_nemestrina
ENSHBUG00000004249	UPF2	100	80.733	ENSMLEG00000036120	UPF2	100	78.923	Mandrillus_leucophaeus
ENSHBUG00000004249	UPF2	100	96.708	ENSMAMG00000018276	UPF2	100	96.557	Mastacembelus_armatus
ENSHBUG00000004249	UPF2	100	99.843	ENSMZEG00005021595	UPF2	100	99.686	Maylandia_zebra
ENSHBUG00000004249	UPF2	99	84.000	ENSMGAG00000004573	UPF2	99	82.275	Meleagris_gallopavo
ENSHBUG00000004249	UPF2	100	80.375	ENSMAUG00000016512	Upf2	100	78.376	Mesocricetus_auratus
ENSHBUG00000004249	UPF2	95	86.224	ENSMICG00000001716	UPF2	99	87.245	Microcebus_murinus
ENSHBUG00000004249	UPF2	100	81.377	ENSMOCG00000008263	Upf2	100	80.781	Microtus_ochrogaster
ENSHBUG00000004249	UPF2	100	89.655	ENSMMOG00000006528	UPF2	100	89.498	Mola_mola
ENSHBUG00000004249	UPF2	100	81.172	ENSMODG00000016794	UPF2	100	81.279	Monodelphis_domestica
ENSHBUG00000004249	UPF2	100	94.828	ENSMALG00000002663	UPF2	100	94.828	Monopterus_albus
ENSHBUG00000004249	UPF2	100	82.252	MGP_CAROLIEiJ_G0023157	Upf2	99	84.669	Mus_caroli
ENSHBUG00000004249	UPF2	100	82.565	ENSMUSG00000043241	Upf2	99	83.902	Mus_musculus
ENSHBUG00000004249	UPF2	100	82.643	MGP_PahariEiJ_G0019217	Upf2	100	83.585	Mus_pahari
ENSHBUG00000004249	UPF2	100	82.799	MGP_SPRETEiJ_G0024075	Upf2	100	83.585	Mus_spretus
ENSHBUG00000004249	UPF2	100	82.969	ENSMPUG00000001064	UPF2	100	81.201	Mustela_putorius_furo
ENSHBUG00000004249	UPF2	100	82.449	ENSMLUG00000000228	UPF2	100	80.685	Myotis_lucifugus
ENSHBUG00000004249	UPF2	100	100.000	ENSNBRG00000013629	UPF2	100	99.843	Neolamprologus_brichardi
ENSHBUG00000004249	UPF2	100	82.592	ENSNLEG00000012058	UPF2	100	80.748	Nomascus_leucogenys
ENSHBUG00000004249	UPF2	72	93.662	ENSOPRG00000006801	-	73	93.662	Ochotona_princeps
ENSHBUG00000004249	UPF2	100	81.704	ENSODEG00000001290	UPF2	100	80.718	Octodon_degus
ENSHBUG00000004249	UPF2	100	99.607	ENSONIG00000017991	UPF2	100	99.530	Oreochromis_niloticus
ENSHBUG00000004249	UPF2	100	81.712	ENSOCUG00000006230	UPF2	100	80.856	Oryctolagus_cuniculus
ENSHBUG00000004249	UPF2	100	92.561	ENSORLG00000017189	UPF2	100	92.572	Oryzias_latipes
ENSHBUG00000004249	UPF2	100	92.639	ENSORLG00020005969	UPF2	100	92.651	Oryzias_latipes_hni
ENSHBUG00000004249	UPF2	100	92.639	ENSORLG00015005713	UPF2	100	92.651	Oryzias_latipes_hsok
ENSHBUG00000004249	UPF2	100	89.498	ENSOMEG00000023420	UPF2	99	88.657	Oryzias_melastigma
ENSHBUG00000004249	UPF2	100	83.203	ENSOGAG00000005796	UPF2	100	80.811	Otolemur_garnettii
ENSHBUG00000004249	UPF2	100	83.073	ENSOARG00000014587	UPF2	100	81.075	Ovis_aries
ENSHBUG00000004249	UPF2	100	80.109	ENSPPAG00000037953	UPF2	100	78.298	Pan_paniscus
ENSHBUG00000004249	UPF2	100	82.969	ENSPPRG00000000690	UPF2	100	81.045	Panthera_pardus
ENSHBUG00000004249	UPF2	100	82.969	ENSPTIG00000008867	UPF2	100	81.045	Panthera_tigris_altaica
ENSHBUG00000004249	UPF2	100	82.592	ENSPTRG00000002291	UPF2	100	80.748	Pan_troglodytes
ENSHBUG00000004249	UPF2	100	82.748	ENSPANG00000023399	UPF2	100	80.904	Papio_anubis
ENSHBUG00000004249	UPF2	100	88.428	ENSPKIG00000025502	UPF2	100	86.729	Paramormyrops_kingsleyae
ENSHBUG00000004249	UPF2	59	81.579	ENSPSIG00000015158	UPF2	95	81.447	Pelodiscus_sinensis
ENSHBUG00000004249	UPF2	100	90.204	ENSPMGG00000005259	UPF2	100	90.204	Periophthalmus_magnuspinnatus
ENSHBUG00000004249	UPF2	93	76.945	ENSPEMG00000015731	Upf2	99	70.119	Peromyscus_maniculatus_bairdii
ENSHBUG00000004249	UPF2	100	83.359	ENSPCIG00000006656	UPF2	100	81.484	Phascolarctos_cinereus
ENSHBUG00000004249	UPF2	100	93.887	ENSPFOG00000017118	UPF2	100	93.349	Poecilia_formosa
ENSHBUG00000004249	UPF2	100	93.887	ENSPLAG00000005094	UPF2	100	93.349	Poecilia_latipinna
ENSHBUG00000004249	UPF2	100	93.809	ENSPMEG00000017009	UPF2	100	93.271	Poecilia_mexicana
ENSHBUG00000004249	UPF2	100	92.163	ENSPREG00000021880	UPF2	100	92.163	Poecilia_reticulata
ENSHBUG00000004249	UPF2	66	84.899	ENSPPYG00000002089	-	100	84.935	Pongo_abelii
ENSHBUG00000004249	UPF2	95	81.237	ENSPCAG00000000684	UPF2	100	70.749	Procavia_capensis
ENSHBUG00000004249	UPF2	100	80.234	ENSPCOG00000021656	UPF2	100	78.594	Propithecus_coquereli
ENSHBUG00000004249	UPF2	100	76.503	ENSPVAG00000017286	UPF2	100	74.513	Pteropus_vampyrus
ENSHBUG00000004249	UPF2	100	97.408	ENSPNYG00000017096	UPF2	100	97.408	Pundamilia_nyererei
ENSHBUG00000004249	UPF2	100	89.539	ENSPNAG00000009357	UPF2	100	89.634	Pygocentrus_nattereri
ENSHBUG00000004249	UPF2	100	78.755	ENSRNOG00000023593	Upf2	98	94.318	Rattus_norvegicus
ENSHBUG00000004249	UPF2	100	81.562	ENSRBIG00000037780	UPF2	100	80.063	Rhinopithecus_bieti
ENSHBUG00000004249	UPF2	100	82.514	ENSRROG00000043547	UPF2	100	80.592	Rhinopithecus_roxellana
ENSHBUG00000004249	UPF2	100	82.109	ENSSBOG00000020012	UPF2	100	80.577	Saimiri_boliviensis_boliviensis
ENSHBUG00000004249	UPF2	100	87.334	ENSSFOG00015023788	upf2	100	87.198	Scleropages_formosus
ENSHBUG00000004249	UPF2	90	92.028	ENSSMAG00000007637	UPF2	100	91.770	Scophthalmus_maximus
ENSHBUG00000004249	UPF2	100	96.473	ENSSDUG00000017244	UPF2	99	96.473	Seriola_dumerili
ENSHBUG00000004249	UPF2	100	93.025	ENSSLDG00000016866	UPF2	100	92.633	Seriola_lalandi_dorsalis
ENSHBUG00000004249	UPF2	100	81.733	ENSSARG00000008615	UPF2	100	79.969	Sorex_araneus
ENSHBUG00000004249	UPF2	100	80.859	ENSSPUG00000014544	UPF2	99	80.703	Sphenodon_punctatus
ENSHBUG00000004249	UPF2	68	84.765	ENSSSCG00000011117	-	99	84.994	Sus_scrofa
ENSHBUG00000004249	UPF2	99	83.047	ENSTGUG00000002163	-	100	81.406	Taeniopygia_guttata
ENSHBUG00000004249	UPF2	100	93.809	ENSTRUG00000007519	UPF2	99	93.809	Takifugu_rubripes
ENSHBUG00000004249	UPF2	100	90.219	ENSTNIG00000004453	UPF2	100	89.609	Tetraodon_nigroviridis
ENSHBUG00000004249	UPF2	93	75.252	ENSTBEG00000012679	UPF2	93	73.490	Tupaia_belangeri
ENSHBUG00000004249	UPF2	100	81.861	ENSTTRG00000016388	UPF2	100	81.109	Tursiops_truncatus
ENSHBUG00000004249	UPF2	87	94.382	ENSUAMG00000023560	UPF2	98	94.382	Ursus_americanus
ENSHBUG00000004249	UPF2	100	83.203	ENSUMAG00000012953	UPF2	95	81.406	Ursus_maritimus
ENSHBUG00000004249	UPF2	83	96.774	ENSVPAG00000006763	UPF2	85	96.774	Vicugna_pacos
ENSHBUG00000004249	UPF2	100	83.125	ENSVVUG00000006166	UPF2	100	81.201	Vulpes_vulpes
ENSHBUG00000004249	UPF2	100	79.891	ENSXETG00000033103	UPF2	91	84.496	Xenopus_tropicalis
ENSHBUG00000004249	UPF2	100	93.652	ENSXCOG00000011604	UPF2	100	93.260	Xiphophorus_couchianus
ENSHBUG00000004249	UPF2	100	93.809	ENSXMAG00000017209	UPF2	100	93.271	Xiphophorus_maculatus