EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000005061 (Gene tree)
Gene ID: 102288945
Gene Symbol: SRRM3
Alias: FLJ37078
Full Name: serine/arginine repetitive matrix protein 3-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 171387 bases
Position: chrJH425348.1:31197-202583
Accession: 102288945
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000003790	cwf21	PF08312.12	2e-15	1	1
ENSHBUP00000023957	cwf21	PF08312.12	2e-15	1	1
ENSHBUP00000003790	SRRM_C	PF15230.6	1.3e-22	1	1
ENSHBUP00000023957	SRRM_C	PF15230.6	1.3e-22	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000009772	SRRM3-201	4541	XM_005918957	ENSHBUP00000023957	641 (aa)	XP_005919019	UPI0003BD7AE6
ENSHBUT00000009785	SRRM3-202	4426	XM_005918959	ENSHBUP00000003790	641 (aa)	XP_005919021	UPI0003BD7AE6

Gene Model

Click here to download ENSHBUG00000005061's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000005061's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000005061	SRRM3	87	83.009	ENSAPOG00000000288	SRRM3	87	83.039	Acanthochromis_polyacanthus
ENSHBUG00000005061	SRRM3	100	99.220	ENSACLG00000005269	SRRM3	100	99.220	Astatotilapia_calliptera
ENSHBUG00000005061	SRRM3	87	54.017	ENSAMXG00000016051	-	88	56.089	Astyanax_mexicanus
ENSHBUG00000005061	SRRM3	87	44.868	ENSCPBG00000027784	SRRM3	90	41.503	Chrysemys_picta_bellii
ENSHBUG00000005061	SRRM3	87	69.634	ENSCSEG00000010978	-	80	68.522	Cynoglossus_semilaevis
ENSHBUG00000005061	SRRM3	87	76.991	ENSGAFG00000014777	SRRM3	88	77.032	Gambusia_affinis
ENSHBUG00000005061	SRRM3	87	46.370	ENSGAGG00000021058	SRRM3	96	42.623	Gopherus_agassizii
ENSHBUG00000005061	SRRM3	87	49.659	ENSIPUG00000012467	srrm3	87	54.437	Ictalurus_punctatus
ENSHBUG00000005061	SRRM3	88	78.010	ENSKMAG00000013495	SRRM3	87	78.032	Kryptolebias_marmoratus
ENSHBUG00000005061	SRRM3	52	57.910	ENSLOCG00000002879	SRRM3	98	56.091	Lepisosteus_oculatus
ENSHBUG00000005061	SRRM3	89	79.655	ENSMALG00000000844	-	89	79.718	Monopterus_albus
ENSHBUG00000005061	SRRM3	88	68.833	ENSONIG00000012732	-	97	67.662	Oreochromis_niloticus
ENSHBUG00000005061	SRRM3	88	75.439	ENSORLG00000026242	-	89	75.309	Oryzias_latipes
ENSHBUG00000005061	SRRM3	100	73.148	ENSORLG00020016592	-	89	75.838	Oryzias_latipes_hni
ENSHBUG00000005061	SRRM3	88	75.439	ENSORLG00015022712	SRRM3	89	75.309	Oryzias_latipes_hsok
ENSHBUG00000005061	SRRM3	100	72.840	ENSOMEG00000010768	-	88	73.898	Oryzias_melastigma
ENSHBUG00000005061	SRRM3	87	53.152	ENSPKIG00000017233	SRRM3	97	53.548	Paramormyrops_kingsleyae
ENSHBUG00000005061	SRRM3	88	57.601	ENSPFOG00000009007	SRRM3	89	55.743	Poecilia_formosa
ENSHBUG00000005061	SRRM3	87	76.283	ENSPMEG00000011981	-	87	76.325	Poecilia_mexicana
ENSHBUG00000005061	SRRM3	87	77.168	ENSPREG00000008138	-	87	77.208	Poecilia_reticulata
ENSHBUG00000005061	SRRM3	87	54.701	ENSPNAG00000009621	SRRM3	87	57.070	Pygocentrus_nattereri
ENSHBUG00000005061	SRRM3	61	53.865	ENSSFOG00015001696	SRRM3	91	56.136	Scleropages_formosus
ENSHBUG00000005061	SRRM3	87	80.423	ENSSMAG00000000476	SRRM3	89	80.458	Scophthalmus_maximus
ENSHBUG00000005061	SRRM3	87	79.412	ENSSLDG00000020070	SRRM3	87	79.965	Seriola_lalandi_dorsalis
ENSHBUG00000005061	SRRM3	67	77.778	ENSTNIG00000008549	-	71	77.778	Tetraodon_nigroviridis
ENSHBUG00000005061	SRRM3	87	76.637	ENSXMAG00000005663	-	88	76.678	Xiphophorus_maculatus