EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000005365 (Gene tree)
Gene ID: 102304274
Gene Symbol: patl1
Alias: fa11d04|wu:fa11d04|zgc:158239
Full Name: PAT1 homolog 1%2C processing body mRNA decay factor
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 16264 bases
Position: chrJH426419.1:33945-50208
Accession: 102304274
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000004073	PAT1	PF09770.9	4.4e-13	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000009301	-	7090	XM_005951542	ENSHBUP00000004073	825 (aa)	XP_005951604	UPI0003BCA547

Gene Model

Click here to download ENSHBUG00000005365's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000005365's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000005365	patl1	84	49.847	ENSG00000166889	PATL1	62	66.667	Homo_sapiens
ENSHBUG00000005365	patl1	86	83.006	ENSAPOG00000021290	patl1	99	88.780	Acanthochromis_polyacanthus
ENSHBUG00000005365	patl1	84	50.534	ENSAMEG00000014215	PATL1	62	66.667	Ailuropoda_melanoleuca
ENSHBUG00000005365	patl1	99	81.477	ENSACIG00000005182	patl1	96	91.892	Amphilophus_citrinellus
ENSHBUG00000005365	patl1	94	81.633	ENSAOCG00000021993	patl1	95	82.225	Amphiprion_ocellaris
ENSHBUG00000005365	patl1	99	87.380	ENSAPEG00000021391	patl1	100	88.715	Amphiprion_percula
ENSHBUG00000005365	patl1	52	35.294	ENSATEG00000019567	patl2	60	36.111	Anabas_testudineus
ENSHBUG00000005365	patl1	100	84.910	ENSATEG00000002230	patl1	100	82.754	Anabas_testudineus
ENSHBUG00000005365	patl1	51	49.571	ENSAPLG00000013394	PATL1	64	54.747	Anas_platyrhynchos
ENSHBUG00000005365	patl1	80	50.560	ENSACAG00000006607	PATL1	62	62.712	Anolis_carolinensis
ENSHBUG00000005365	patl1	84	49.847	ENSANAG00000023078	PATL1	62	66.667	Aotus_nancymaae
ENSHBUG00000005365	patl1	100	99.515	ENSACLG00000005144	patl1	100	99.515	Astatotilapia_calliptera
ENSHBUG00000005365	patl1	60	86.683	ENSAMXG00000010731	patl1	100	74.248	Astyanax_mexicanus
ENSHBUG00000005365	patl1	52	37.143	ENSAMXG00000020293	patl2	57	38.191	Astyanax_mexicanus
ENSHBUG00000005365	patl1	84	50.382	ENSBTAG00000005913	PATL1	62	66.667	Bos_taurus
ENSHBUG00000005365	patl1	84	49.847	ENSCJAG00000016192	PATL1	62	66.667	Callithrix_jacchus
ENSHBUG00000005365	patl1	51	36.404	ENSCJAG00000002379	PATL2	72	37.838	Callithrix_jacchus
ENSHBUG00000005365	patl1	84	50.687	ENSCAFG00000007581	PATL1	62	66.667	Canis_familiaris
ENSHBUG00000005365	patl1	84	50.765	ENSCAFG00020001648	PATL1	64	66.667	Canis_lupus_dingo
ENSHBUG00000005365	patl1	84	49.160	ENSCHIG00000025913	PATL1	63	66.667	Capra_hircus
ENSHBUG00000005365	patl1	52	38.375	ENSCHIG00000026665	PATL2	74	39.604	Capra_hircus
ENSHBUG00000005365	patl1	84	49.924	ENSTSYG00000012748	PATL1	62	66.667	Carlito_syrichta
ENSHBUG00000005365	patl1	51	36.629	ENSTSYG00000032456	PATL2	72	37.192	Carlito_syrichta
ENSHBUG00000005365	patl1	84	50.485	ENSCAPG00000013668	PATL1	61	68.333	Cavia_aperea
ENSHBUG00000005365	patl1	84	50.485	ENSCPOG00000006827	PATL1	60	68.333	Cavia_porcellus
ENSHBUG00000005365	patl1	84	49.847	ENSCCAG00000023759	PATL1	62	66.667	Cebus_capucinus
ENSHBUG00000005365	patl1	84	49.694	ENSCATG00000009629	PATL1	62	66.667	Cercocebus_atys
ENSHBUG00000005365	patl1	83	49.847	ENSCLAG00000003427	PATL1	61	69.231	Chinchilla_lanigera
ENSHBUG00000005365	patl1	72	49.694	ENSCSAG00000006095	PATL1	60	53.717	Chlorocebus_sabaeus
ENSHBUG00000005365	patl1	60	57.576	ENSCHOG00000001611	PATL1	82	57.576	Choloepus_hoffmanni
ENSHBUG00000005365	patl1	51	36.465	ENSCANG00000013856	PATL2	73	37.805	Colobus_angolensis_palliatus
ENSHBUG00000005365	patl1	84	49.694	ENSCANG00000039197	PATL1	62	66.102	Colobus_angolensis_palliatus
ENSHBUG00000005365	patl1	83	50.617	ENSCGRG00001024927	Patl1	62	66.667	Cricetulus_griseus_chok1gshd
ENSHBUG00000005365	patl1	52	35.268	ENSCGRG00001010801	Patl2	73	37.302	Cricetulus_griseus_chok1gshd
ENSHBUG00000005365	patl1	52	35.268	ENSCGRG00000013007	Patl2	73	37.302	Cricetulus_griseus_crigri
ENSHBUG00000005365	patl1	83	50.617	ENSCGRG00000000461	Patl1	61	67.308	Cricetulus_griseus_crigri
ENSHBUG00000005365	patl1	50	34.107	ENSCSEG00000009438	patl2	57	33.756	Cynoglossus_semilaevis
ENSHBUG00000005365	patl1	100	82.079	ENSCSEG00000008261	patl1	100	81.265	Cynoglossus_semilaevis
ENSHBUG00000005365	patl1	75	87.500	ENSCVAG00000006664	patl1	85	87.500	Cyprinodon_variegatus
ENSHBUG00000005365	patl1	100	71.770	ENSDARG00000017423	patl1	100	69.868	Danio_rerio
ENSHBUG00000005365	patl1	73	48.606	ENSDNOG00000038865	PATL1	75	52.998	Dasypus_novemcinctus
ENSHBUG00000005365	patl1	84	49.541	ENSDORG00000000237	Patl1	62	68.333	Dipodomys_ordii
ENSHBUG00000005365	patl1	51	35.682	ENSEASG00005017984	PATL2	71	36.567	Equus_asinus_asinus
ENSHBUG00000005365	patl1	84	50.152	ENSEASG00005007963	PATL1	64	66.667	Equus_asinus_asinus
ENSHBUG00000005365	patl1	84	50.305	ENSECAG00000011411	PATL1	62	66.667	Equus_caballus
ENSHBUG00000005365	patl1	51	35.714	ENSECAG00000013462	PATL2	72	36.585	Equus_caballus
ENSHBUG00000005365	patl1	58	35.119	ENSELUG00000023244	patl2	54	37.626	Esox_lucius
ENSHBUG00000005365	patl1	100	71.087	ENSELUG00000024249	patl1	100	71.344	Esox_lucius
ENSHBUG00000005365	patl1	84	50.459	ENSFCAG00000015573	PATL1	62	66.667	Felis_catus
ENSHBUG00000005365	patl1	51	37.330	ENSFCAG00000027170	PATL2	73	38.557	Felis_catus
ENSHBUG00000005365	patl1	82	51.703	ENSFALG00000012150	PATL1	62	62.712	Ficedula_albicollis
ENSHBUG00000005365	patl1	58	34.921	ENSFALG00000009768	PATL2	55	37.215	Ficedula_albicollis
ENSHBUG00000005365	patl1	83	49.846	ENSFDAG00000016128	PATL1	61	67.308	Fukomys_damarensis
ENSHBUG00000005365	patl1	99	83.840	ENSFHEG00000017790	patl1	100	83.676	Fundulus_heteroclitus
ENSHBUG00000005365	patl1	54	36.017	ENSGALG00000002167	PATL2	50	37.931	Gallus_gallus
ENSHBUG00000005365	patl1	80	66.667	ENSGALG00000042641	PATL1	63	66.667	Gallus_gallus
ENSHBUG00000005365	patl1	100	83.696	ENSGAFG00000006508	patl1	100	82.367	Gambusia_affinis
ENSHBUG00000005365	patl1	81	87.931	ENSGACG00000016448	patl1	99	72.450	Gasterosteus_aculeatus
ENSHBUG00000005365	patl1	78	66.667	ENSGAGG00000004461	PATL1	64	66.667	Gopherus_agassizii
ENSHBUG00000005365	patl1	84	49.847	ENSGGOG00000004335	PATL1	64	66.667	Gorilla_gorilla
ENSHBUG00000005365	patl1	84	49.515	ENSHGLG00000018173	PATL1	62	68.333	Heterocephalus_glaber_female
ENSHBUG00000005365	patl1	83	49.388	ENSHGLG00100003453	PATL1	63	58.621	Heterocephalus_glaber_male
ENSHBUG00000005365	patl1	100	80.746	ENSHCOG00000001898	patl1	100	79.663	Hippocampus_comes
ENSHBUG00000005365	patl1	82	50.612	ENSSTOG00000013764	PATL1	61	67.347	Ictidomys_tridecemlineatus
ENSHBUG00000005365	patl1	51	35.556	ENSSTOG00000033848	PATL2	72	37.408	Ictidomys_tridecemlineatus
ENSHBUG00000005365	patl1	83	49.541	ENSJJAG00000010135	Patl1	61	69.231	Jaculus_jaculus
ENSHBUG00000005365	patl1	100	88.327	ENSKMAG00000020848	patl1	100	88.448	Kryptolebias_marmoratus
ENSHBUG00000005365	patl1	50	36.028	ENSLBEG00000022344	patl2	53	36.935	Labrus_bergylta
ENSHBUG00000005365	patl1	100	88.278	ENSLBEG00000023617	patl1	100	87.665	Labrus_bergylta
ENSHBUG00000005365	patl1	75	65.385	ENSLACG00000004640	PATL1	63	68.750	Latimeria_chalumnae
ENSHBUG00000005365	patl1	100	62.089	ENSLOCG00000000717	patl1	100	61.547	Lepisosteus_oculatus
ENSHBUG00000005365	patl1	84	50.459	ENSLAFG00000015161	PATL1	62	66.667	Loxodonta_africana
ENSHBUG00000005365	patl1	84	49.694	ENSMFAG00000040851	PATL1	62	66.667	Macaca_fascicularis
ENSHBUG00000005365	patl1	84	49.694	ENSMMUG00000017287	PATL1	62	66.667	Macaca_mulatta
ENSHBUG00000005365	patl1	84	49.694	ENSMNEG00000038692	PATL1	62	66.667	Macaca_nemestrina
ENSHBUG00000005365	patl1	84	49.541	ENSMLEG00000030044	PATL1	62	66.667	Mandrillus_leucophaeus
ENSHBUG00000005365	patl1	100	85.629	ENSMAMG00000003950	patl1	100	85.030	Mastacembelus_armatus
ENSHBUG00000005365	patl1	100	99.273	ENSMZEG00005013404	patl1	100	99.273	Maylandia_zebra
ENSHBUG00000005365	patl1	73	67.857	ENSMGAG00000003406	PATL1	59	67.857	Meleagris_gallopavo
ENSHBUG00000005365	patl1	71	44.688	ENSMAUG00000012059	Patl1	72	54.305	Mesocricetus_auratus
ENSHBUG00000005365	patl1	55	35.129	ENSMAUG00000001008	Patl2	75	36.456	Mesocricetus_auratus
ENSHBUG00000005365	patl1	84	47.573	ENSMICG00000004172	PATL1	60	66.667	Microcebus_murinus
ENSHBUG00000005365	patl1	83	50.617	ENSMOCG00000010087	Patl1	62	66.667	Microtus_ochrogaster
ENSHBUG00000005365	patl1	81	83.798	ENSMMOG00000013711	patl1	93	93.333	Mola_mola
ENSHBUG00000005365	patl1	51	37.143	ENSMODG00000017690	PATL2	71	38.072	Monodelphis_domestica
ENSHBUG00000005365	patl1	80	51.185	ENSMODG00000020201	PATL1	62	66.667	Monodelphis_domestica
ENSHBUG00000005365	patl1	95	74.140	ENSMALG00000018706	patl1	100	73.980	Monopterus_albus
ENSHBUG00000005365	patl1	84	51.223	MGP_CAROLIEiJ_G0022739	Patl1	62	66.667	Mus_caroli
ENSHBUG00000005365	patl1	84	51.070	ENSMUSG00000046139	Patl1	62	66.667	Mus_musculus
ENSHBUG00000005365	patl1	84	51.070	MGP_PahariEiJ_G0014233	Patl1	62	66.667	Mus_pahari
ENSHBUG00000005365	patl1	84	51.223	MGP_SPRETEiJ_G0023652	Patl1	62	66.667	Mus_spretus
ENSHBUG00000005365	patl1	84	50.534	ENSMPUG00000014607	PATL1	62	66.667	Mustela_putorius_furo
ENSHBUG00000005365	patl1	84	50.789	ENSMLUG00000011169	PATL1	63	66.667	Myotis_lucifugus
ENSHBUG00000005365	patl1	84	49.771	ENSNGAG00000003682	Patl1	61	66.667	Nannospalax_galili
ENSHBUG00000005365	patl1	66	98.788	ENSNBRG00000015372	patl1	75	98.788	Neolamprologus_brichardi
ENSHBUG00000005365	patl1	84	48.598	ENSNLEG00000013081	PATL1	64	66.667	Nomascus_leucogenys
ENSHBUG00000005365	patl1	56	57.047	ENSMEUG00000009391	PATL1	73	56.291	Notamacropus_eugenii
ENSHBUG00000005365	patl1	60	54.974	ENSOPRG00000007963	PATL1	78	54.061	Ochotona_princeps
ENSHBUG00000005365	patl1	100	98.424	ENSONIG00000004170	patl1	100	98.424	Oreochromis_niloticus
ENSHBUG00000005365	patl1	84	50.459	ENSOCUG00000002156	PATL1	62	66.667	Oryctolagus_cuniculus
ENSHBUG00000005365	patl1	84	49.694	ENSOGAG00000004351	PATL1	62	66.667	Otolemur_garnettii
ENSHBUG00000005365	patl1	50	37.300	ENSOARG00000003762	PATL2	72	38.442	Ovis_aries
ENSHBUG00000005365	patl1	83	49.466	ENSOARG00000012005	PATL1	59	67.308	Ovis_aries
ENSHBUG00000005365	patl1	84	49.847	ENSPPAG00000034275	PATL1	63	66.667	Pan_paniscus
ENSHBUG00000005365	patl1	51	36.652	ENSPPRG00000004279	PATL2	73	37.624	Panthera_pardus
ENSHBUG00000005365	patl1	83	50.459	ENSPPRG00000020639	PATL1	61	67.308	Panthera_pardus
ENSHBUG00000005365	patl1	84	50.459	ENSPTIG00000019298	PATL1	62	66.667	Panthera_tigris_altaica
ENSHBUG00000005365	patl1	51	36.652	ENSPTIG00000018964	PATL2	73	37.624	Panthera_tigris_altaica
ENSHBUG00000005365	patl1	84	47.573	ENSPTRG00000003697	PATL1	91	66.667	Pan_troglodytes
ENSHBUG00000005365	patl1	84	49.694	ENSPANG00000035620	PATL1	62	66.667	Papio_anubis
ENSHBUG00000005365	patl1	100	71.170	ENSPKIG00000016224	patl1	100	69.843	Paramormyrops_kingsleyae
ENSHBUG00000005365	patl1	82	65.000	ENSPSIG00000016206	PATL1	59	65.000	Pelodiscus_sinensis
ENSHBUG00000005365	patl1	52	33.483	ENSPMGG00000014550	patl2	62	35.279	Periophthalmus_magnuspinnatus
ENSHBUG00000005365	patl1	100	79.469	ENSPMGG00000002644	patl1	100	77.778	Periophthalmus_magnuspinnatus
ENSHBUG00000005365	patl1	50	36.468	ENSPEMG00000016509	Patl2	67	38.333	Peromyscus_maniculatus_bairdii
ENSHBUG00000005365	patl1	83	50.463	ENSPEMG00000014215	Patl1	62	66.667	Peromyscus_maniculatus_bairdii
ENSHBUG00000005365	patl1	83	50.305	ENSPCIG00000010852	PATL1	62	66.667	Phascolarctos_cinereus
ENSHBUG00000005365	patl1	100	81.182	ENSPFOG00000007768	patl1	100	81.842	Poecilia_formosa
ENSHBUG00000005365	patl1	100	82.750	ENSPLAG00000018465	patl1	100	83.112	Poecilia_latipinna
ENSHBUG00000005365	patl1	100	83.353	ENSPMEG00000006555	patl1	100	82.871	Poecilia_mexicana
ENSHBUG00000005365	patl1	90	80.914	ENSPREG00000003874	patl1	95	80.376	Poecilia_reticulata
ENSHBUG00000005365	patl1	84	50.000	ENSPPYG00000003230	PATL1	62	66.667	Pongo_abelii
ENSHBUG00000005365	patl1	84	49.694	ENSPCOG00000020770	PATL1	64	66.667	Propithecus_coquereli
ENSHBUG00000005365	patl1	52	37.445	ENSPCOG00000000295	PATL2	99	39.892	Propithecus_coquereli
ENSHBUG00000005365	patl1	72	48.690	ENSPVAG00000015239	PATL1	63	50.976	Pteropus_vampyrus
ENSHBUG00000005365	patl1	100	80.970	ENSPNYG00000018936	patl1	100	80.970	Pundamilia_nyererei
ENSHBUG00000005365	patl1	100	74.639	ENSPNAG00000017907	patl1	100	74.096	Pygocentrus_nattereri
ENSHBUG00000005365	patl1	51	37.778	ENSPNAG00000002315	patl2	57	38.750	Pygocentrus_nattereri
ENSHBUG00000005365	patl1	84	50.153	ENSRNOG00000021052	Patl1	62	66.667	Rattus_norvegicus
ENSHBUG00000005365	patl1	84	47.573	ENSRBIG00000032263	PATL1	82	66.667	Rhinopithecus_bieti
ENSHBUG00000005365	patl1	84	49.694	ENSRROG00000032861	PATL1	62	66.667	Rhinopithecus_roxellana
ENSHBUG00000005365	patl1	84	50.000	ENSSBOG00000025195	PATL1	63	66.667	Saimiri_boliviensis_boliviensis
ENSHBUG00000005365	patl1	83	50.152	ENSSHAG00000004309	PATL1	62	66.667	Sarcophilus_harrisii
ENSHBUG00000005365	patl1	100	70.531	ENSSFOG00015009614	patl1	100	70.843	Scleropages_formosus
ENSHBUG00000005365	patl1	100	84.856	ENSSMAG00000009482	patl1	100	84.976	Scophthalmus_maximus
ENSHBUG00000005365	patl1	100	85.731	ENSSDUG00000005362	patl1	100	85.731	Seriola_dumerili
ENSHBUG00000005365	patl1	100	85.357	ENSSLDG00000019146	patl1	100	85.357	Seriola_lalandi_dorsalis
ENSHBUG00000005365	patl1	57	51.048	ENSSARG00000009600	PATL1	54	55.396	Sorex_araneus
ENSHBUG00000005365	patl1	83	52.322	ENSSPUG00000009453	PATL1	63	70.000	Sphenodon_punctatus
ENSHBUG00000005365	patl1	84	50.076	ENSSSCG00000013124	PATL1	62	66.667	Sus_scrofa
ENSHBUG00000005365	patl1	84	50.305	ENSTGUG00000006222	PATL1	61	64.286	Taeniopygia_guttata
ENSHBUG00000005365	patl1	100	72.249	ENSTRUG00000000709	patl1	100	70.084	Takifugu_rubripes
ENSHBUG00000005365	patl1	74	47.664	ENSTBEG00000000796	PATL1	60	61.538	Tupaia_belangeri
ENSHBUG00000005365	patl1	63	54.712	ENSTTRG00000009389	PATL1	83	53.807	Tursiops_truncatus
ENSHBUG00000005365	patl1	83	50.459	ENSUMAG00000018634	PATL1	63	77.778	Ursus_maritimus
ENSHBUG00000005365	patl1	84	50.473	ENSVVUG00000016668	PATL1	64	65.000	Vulpes_vulpes
ENSHBUG00000005365	patl1	68	89.831	ENSXCOG00000010808	patl1	99	89.474	Xiphophorus_couchianus
ENSHBUG00000005365	patl1	52	35.747	ENSXMAG00000018464	patl2	54	36.548	Xiphophorus_maculatus
ENSHBUG00000005365	patl1	100	83.454	ENSXMAG00000013834	patl1	100	82.609	Xiphophorus_maculatus