EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000005908 (Gene tree)
Gene ID: 102310584
Gene Symbol: xrn1
Alias: wu:fk92c07|zgc:63635
Full Name: 5'-3' exoribonuclease 1
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 20451 bases
Position: chrJH425536.1:885582-906032
Accession: 102310584
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000004248	XRN_N	PF03159.18	9.5e-95	1	1
ENSHBUP00000024239	XRN_N	PF03159.18	1.2e-94	1	1
ENSHBUP00000004216	XRN_N	PF03159.18	1.1e-48	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000009062	-	4911	-	ENSHBUP00000024239	1636 (aa)	-	-
ENSHBUT00000009026	-	5007	XM_005936993	ENSHBUP00000004248	1668 (aa)	XP_005937055	-
ENSHBUT00000009089	-	1461	-	ENSHBUP00000004216	486 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000005908's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000005908's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000005908	xrn1	98	72.279	ENSG00000114127	XRN1	97	95.192	Homo_sapiens
ENSHBUG00000005908	xrn1	98	84.823	ENSAPOG00000000622	xrn1	100	83.182	Acanthochromis_polyacanthus
ENSHBUG00000005908	xrn1	98	72.746	ENSAMEG00000012538	XRN1	94	70.166	Ailuropoda_melanoleuca
ENSHBUG00000005908	xrn1	100	87.993	ENSACIG00000001057	xrn1	100	89.246	Amphilophus_citrinellus
ENSHBUG00000005908	xrn1	98	84.823	ENSAOCG00000014097	xrn1	100	83.873	Amphiprion_ocellaris
ENSHBUG00000005908	xrn1	98	84.886	ENSAPEG00000006620	xrn1	99	85.587	Amphiprion_percula
ENSHBUG00000005908	xrn1	97	86.109	ENSATEG00000009752	xrn1	99	86.109	Anabas_testudineus
ENSHBUG00000005908	xrn1	98	73.663	ENSAPLG00000004905	XRN1	94	69.992	Anas_platyrhynchos
ENSHBUG00000005908	xrn1	98	72.671	ENSACAG00000004985	XRN1	94	69.279	Anolis_carolinensis
ENSHBUG00000005908	xrn1	98	73.511	ENSANAG00000029013	XRN1	99	72.296	Aotus_nancymaae
ENSHBUG00000005908	xrn1	100	94.903	ENSACLG00000004806	xrn1	100	94.903	Astatotilapia_calliptera
ENSHBUG00000005908	xrn1	99	67.719	ENSAMXG00000019370	xrn1	95	97.087	Astyanax_mexicanus
ENSHBUG00000005908	xrn1	98	72.541	ENSBTAG00000011524	XRN1	100	59.794	Bos_taurus
ENSHBUG00000005908	xrn1	95	45.336	WBGene00012730	xrn-1	80	37.348	Caenorhabditis_elegans
ENSHBUG00000005908	xrn1	98	72.895	ENSCJAG00000001872	XRN1	100	60.638	Callithrix_jacchus
ENSHBUG00000005908	xrn1	98	73.566	ENSCAFG00000007783	XRN1	94	71.044	Canis_familiaris
ENSHBUG00000005908	xrn1	98	74.534	ENSCAFG00020009120	XRN1	99	76.115	Canis_lupus_dingo
ENSHBUG00000005908	xrn1	98	72.541	ENSCHIG00000019192	XRN1	94	70.174	Capra_hircus
ENSHBUG00000005908	xrn1	98	72.690	ENSTSYG00000002705	XRN1	100	61.047	Carlito_syrichta
ENSHBUG00000005908	xrn1	98	58.455	ENSCAPG00000004604	-	99	63.712	Cavia_aperea
ENSHBUG00000005908	xrn1	98	72.895	ENSCCAG00000034800	XRN1	99	75.436	Cebus_capucinus
ENSHBUG00000005908	xrn1	98	72.690	ENSCATG00000041794	XRN1	96	70.500	Cercocebus_atys
ENSHBUG00000005908	xrn1	98	72.951	ENSCLAG00000001451	XRN1	99	75.277	Chinchilla_lanigera
ENSHBUG00000005908	xrn1	98	72.895	ENSCSAG00000011265	XRN1	100	60.161	Chlorocebus_sabaeus
ENSHBUG00000005908	xrn1	56	93.506	ENSCHOG00000013961	-	53	93.506	Choloepus_hoffmanni
ENSHBUG00000005908	xrn1	97	54.470	ENSCING00000001334	-	95	68.378	Ciona_intestinalis
ENSHBUG00000005908	xrn1	95	58.263	ENSCSAVG00000008584	-	93	50.896	Ciona_savignyi
ENSHBUG00000005908	xrn1	98	72.895	ENSCANG00000037495	XRN1	99	75.436	Colobus_angolensis_palliatus
ENSHBUG00000005908	xrn1	98	73.306	ENSCGRG00001019411	Xrn1	99	75.594	Cricetulus_griseus_chok1gshd
ENSHBUG00000005908	xrn1	98	73.306	ENSCGRG00000012464	Xrn1	99	75.594	Cricetulus_griseus_crigri
ENSHBUG00000005908	xrn1	98	79.710	ENSCSEG00000021285	xrn1	93	99.029	Cynoglossus_semilaevis
ENSHBUG00000005908	xrn1	69	84.187	ENSCVAG00000013089	xrn1	99	84.411	Cyprinodon_variegatus
ENSHBUG00000005908	xrn1	97	76.398	ENSDARG00000091652	xrn1	100	77.893	Danio_rerio
ENSHBUG00000005908	xrn1	98	73.101	ENSDORG00000013833	Xrn1	100	60.208	Dipodomys_ordii
ENSHBUG00000005908	xrn1	95	49.260	FBgn0020261	pcm	77	38.567	Drosophila_melanogaster
ENSHBUG00000005908	xrn1	85	71.171	ENSETEG00000003978	XRN1	88	71.074	Echinops_telfairi
ENSHBUG00000005908	xrn1	98	73.913	ENSEASG00005002687	XRN1	99	75.158	Equus_asinus_asinus
ENSHBUG00000005908	xrn1	98	73.566	ENSECAG00000008301	XRN1	100	60.149	Equus_caballus
ENSHBUG00000005908	xrn1	95	74.630	ENSEEUG00000011323	XRN1	92	63.875	Erinaceus_europaeus
ENSHBUG00000005908	xrn1	95	77.754	ENSELUG00000000169	xrn1	100	70.287	Esox_lucius
ENSHBUG00000005908	xrn1	98	63.542	ENSFCAG00000027589	XRN1	99	76.522	Felis_catus
ENSHBUG00000005908	xrn1	98	73.608	ENSFALG00000007021	XRN1	95	69.767	Ficedula_albicollis
ENSHBUG00000005908	xrn1	98	72.895	ENSFDAG00000020494	XRN1	99	75.277	Fukomys_damarensis
ENSHBUG00000005908	xrn1	95	78.355	ENSFHEG00000017356	-	96	77.489	Fundulus_heteroclitus
ENSHBUG00000005908	xrn1	98	73.292	ENSGMOG00000006396	xrn1	88	73.213	Gadus_morhua
ENSHBUG00000005908	xrn1	98	73.967	ENSGALG00000002706	XRN1	94	70.287	Gallus_gallus
ENSHBUG00000005908	xrn1	99	84.585	ENSGACG00000014328	xrn1	95	84.585	Gasterosteus_aculeatus
ENSHBUG00000005908	xrn1	98	73.140	ENSGAGG00000017535	XRN1	93	70.245	Gopherus_agassizii
ENSHBUG00000005908	xrn1	98	72.279	ENSGGOG00000008047	XRN1	100	60.615	Gorilla_gorilla
ENSHBUG00000005908	xrn1	98	73.101	ENSHGLG00000014476	XRN1	99	75.277	Heterocephalus_glaber_female
ENSHBUG00000005908	xrn1	98	73.101	ENSHGLG00100015130	XRN1	99	75.277	Heterocephalus_glaber_male
ENSHBUG00000005908	xrn1	98	79.588	ENSHCOG00000014062	xrn1	99	81.944	Hippocampus_comes
ENSHBUG00000005908	xrn1	95	74.262	ENSIPUG00000015229	xrn1	100	68.433	Ictalurus_punctatus
ENSHBUG00000005908	xrn1	98	72.541	ENSSTOG00000013552	XRN1	99	75.119	Ictidomys_tridecemlineatus
ENSHBUG00000005908	xrn1	98	72.746	ENSJJAG00000010863	Xrn1	99	74.257	Jaculus_jaculus
ENSHBUG00000005908	xrn1	95	82.839	ENSKMAG00000021356	xrn1	100	77.041	Kryptolebias_marmoratus
ENSHBUG00000005908	xrn1	98	80.665	ENSLBEG00000018656	xrn1	98	98.077	Labrus_bergylta
ENSHBUG00000005908	xrn1	98	72.428	ENSLACG00000009020	XRN1	94	70.370	Latimeria_chalumnae
ENSHBUG00000005908	xrn1	98	74.743	ENSLOCG00000007944	xrn1	95	73.550	Lepisosteus_oculatus
ENSHBUG00000005908	xrn1	98	73.347	ENSLAFG00000015426	XRN1	99	72.523	Loxodonta_africana
ENSHBUG00000005908	xrn1	98	72.690	ENSMFAG00000032599	XRN1	100	60.673	Macaca_fascicularis
ENSHBUG00000005908	xrn1	98	72.690	ENSMMUG00000014038	XRN1	100	60.673	Macaca_mulatta
ENSHBUG00000005908	xrn1	98	72.784	ENSMNEG00000034217	XRN1	100	60.615	Macaca_nemestrina
ENSHBUG00000005908	xrn1	71	70.474	ENSMLEG00000041349	-	99	75.711	Mandrillus_leucophaeus
ENSHBUG00000005908	xrn1	98	84.615	ENSMAMG00000013219	xrn1	94	84.615	Mastacembelus_armatus
ENSHBUG00000005908	xrn1	100	94.728	ENSMZEG00005015099	xrn1	100	94.728	Maylandia_zebra
ENSHBUG00000005908	xrn1	98	70.868	ENSMGAG00000006333	XRN1	94	69.478	Meleagris_gallopavo
ENSHBUG00000005908	xrn1	98	72.990	ENSMICG00000048948	XRN1	97	95.192	Microcebus_murinus
ENSHBUG00000005908	xrn1	98	73.101	ENSMOCG00000008665	Xrn1	99	75.436	Microtus_ochrogaster
ENSHBUG00000005908	xrn1	94	79.526	ENSMMOG00000020896	-	96	76.427	Mola_mola
ENSHBUG00000005908	xrn1	98	72.840	ENSMODG00000021236	XRN1	100	59.520	Monodelphis_domestica
ENSHBUG00000005908	xrn1	99	77.029	ENSMALG00000004098	xrn1	100	77.394	Monopterus_albus
ENSHBUG00000005908	xrn1	98	73.717	MGP_CAROLIEiJ_G0032535	Xrn1	100	87.805	Mus_caroli
ENSHBUG00000005908	xrn1	98	73.511	ENSMUSG00000032410	Xrn1	100	87.805	Mus_musculus
ENSHBUG00000005908	xrn1	98	73.306	MGP_PahariEiJ_G0015404	Xrn1	100	87.805	Mus_pahari
ENSHBUG00000005908	xrn1	98	73.511	MGP_SPRETEiJ_G0033678	Xrn1	100	87.805	Mus_spretus
ENSHBUG00000005908	xrn1	98	73.663	ENSMPUG00000012040	XRN1	100	60.663	Mustela_putorius_furo
ENSHBUG00000005908	xrn1	98	72.690	ENSMLUG00000016885	XRN1	94	70.182	Myotis_lucifugus
ENSHBUG00000005908	xrn1	98	66.460	ENSNGAG00000023964	Xrn1	99	70.906	Nannospalax_galili
ENSHBUG00000005908	xrn1	98	73.101	ENSNLEG00000004726	XRN1	100	60.731	Nomascus_leucogenys
ENSHBUG00000005908	xrn1	67	95.876	ENSMEUG00000014473	-	66	96.117	Notamacropus_eugenii
ENSHBUG00000005908	xrn1	87	65.438	ENSOPRG00000007337	-	73	66.423	Ochotona_princeps
ENSHBUG00000005908	xrn1	99	95.253	ENSONIG00000016673	xrn1	99	93.484	Oreochromis_niloticus
ENSHBUG00000005908	xrn1	90	72.321	ENSOANG00000006735	XRN1	93	68.081	Ornithorhynchus_anatinus
ENSHBUG00000005908	xrn1	98	73.196	ENSOCUG00000001861	XRN1	94	70.681	Oryctolagus_cuniculus
ENSHBUG00000005908	xrn1	100	79.268	ENSORLG00000013005	xrn1	98	79.327	Oryzias_latipes
ENSHBUG00000005908	xrn1	95	84.110	ENSORLG00020005559	xrn1	100	79.196	Oryzias_latipes_hni
ENSHBUG00000005908	xrn1	95	83.686	ENSORLG00015022523	xrn1	99	80.229	Oryzias_latipes_hsok
ENSHBUG00000005908	xrn1	99	84.240	ENSOMEG00000015397	xrn1	99	86.241	Oryzias_melastigma
ENSHBUG00000005908	xrn1	98	66.324	ENSOGAG00000000170	XRN1	100	59.172	Otolemur_garnettii
ENSHBUG00000005908	xrn1	98	72.336	ENSOARG00000006343	XRN1	94	70.119	Ovis_aries
ENSHBUG00000005908	xrn1	98	72.485	ENSPPAG00000010180	XRN1	100	60.824	Pan_paniscus
ENSHBUG00000005908	xrn1	98	73.415	ENSPPRG00000007125	XRN1	100	61.137	Panthera_pardus
ENSHBUG00000005908	xrn1	98	73.415	ENSPTIG00000021081	XRN1	100	61.137	Panthera_tigris_altaica
ENSHBUG00000005908	xrn1	98	72.485	ENSPTRG00000015482	XRN1	100	60.824	Pan_troglodytes
ENSHBUG00000005908	xrn1	98	72.690	ENSPANG00000010638	XRN1	100	60.731	Papio_anubis
ENSHBUG00000005908	xrn1	98	74.074	ENSPSIG00000018050	XRN1	94	70.463	Pelodiscus_sinensis
ENSHBUG00000005908	xrn1	98	79.296	ENSPMGG00000002648	xrn1	99	86.446	Periophthalmus_magnuspinnatus
ENSHBUG00000005908	xrn1	98	73.101	ENSPEMG00000020610	Xrn1	99	75.594	Peromyscus_maniculatus_bairdii
ENSHBUG00000005908	xrn1	97	51.934	ENSPMAG00000002975	xrn1	99	49.916	Petromyzon_marinus
ENSHBUG00000005908	xrn1	98	73.251	ENSPCIG00000028735	XRN1	99	75.556	Phascolarctos_cinereus
ENSHBUG00000005908	xrn1	96	82.083	ENSPFOG00000013932	xrn1	99	82.013	Poecilia_formosa
ENSHBUG00000005908	xrn1	96	84.000	ENSPLAG00000021653	xrn1	99	82.476	Poecilia_latipinna
ENSHBUG00000005908	xrn1	96	82.218	ENSPMEG00000003076	xrn1	95	82.557	Poecilia_mexicana
ENSHBUG00000005908	xrn1	99	79.381	ENSPREG00000021147	xrn1	100	79.638	Poecilia_reticulata
ENSHBUG00000005908	xrn1	98	73.101	ENSPPYG00000014172	XRN1	100	60.334	Pongo_abelii
ENSHBUG00000005908	xrn1	95	73.319	ENSPCAG00000005638	XRN1	91	65.559	Procavia_capensis
ENSHBUG00000005908	xrn1	98	72.485	ENSPCOG00000013089	XRN1	99	75.119	Propithecus_coquereli
ENSHBUG00000005908	xrn1	98	65.361	ENSPVAG00000016265	XRN1	91	69.370	Pteropus_vampyrus
ENSHBUG00000005908	xrn1	100	97.045	ENSPNYG00000010570	xrn1	100	97.045	Pundamilia_nyererei
ENSHBUG00000005908	xrn1	98	71.721	ENSPNAG00000023531	xrn1	100	68.548	Pygocentrus_nattereri
ENSHBUG00000005908	xrn1	98	73.306	ENSRNOG00000042951	Xrn1	94	70.285	Rattus_norvegicus
ENSHBUG00000005908	xrn1	98	72.485	ENSRBIG00000041227	XRN1	100	60.093	Rhinopithecus_bieti
ENSHBUG00000005908	xrn1	71	69.638	ENSRROG00000033764	-	100	95.146	Rhinopithecus_roxellana
ENSHBUG00000005908	xrn1	87	48.327	YGL173C	XRN1	74	51.762	Saccharomyces_cerevisiae
ENSHBUG00000005908	xrn1	98	72.895	ENSSBOG00000029561	XRN1	100	60.127	Saimiri_boliviensis_boliviensis
ENSHBUG00000005908	xrn1	98	73.457	ENSSHAG00000016207	XRN1	95	68.203	Sarcophilus_harrisii
ENSHBUG00000005908	xrn1	95	77.004	ENSSFOG00015024211	xrn1	100	66.470	Scleropages_formosus
ENSHBUG00000005908	xrn1	99	80.638	ENSSMAG00000016534	xrn1	100	82.246	Scophthalmus_maximus
ENSHBUG00000005908	xrn1	95	85.805	ENSSDUG00000010306	xrn1	98	88.609	Seriola_dumerili
ENSHBUG00000005908	xrn1	95	86.963	ENSSLDG00000021543	xrn1	100	86.963	Seriola_lalandi_dorsalis
ENSHBUG00000005908	xrn1	98	73.306	ENSSARG00000007741	-	75	65.638	Sorex_araneus
ENSHBUG00000005908	xrn1	98	73.196	ENSSPUG00000010779	-	97	73.196	Sphenodon_punctatus
ENSHBUG00000005908	xrn1	97	87.552	ENSSPAG00000009856	-	95	87.552	Stegastes_partitus
ENSHBUG00000005908	xrn1	98	73.402	ENSTGUG00000008498	XRN1	95	70.929	Taeniopygia_guttata
ENSHBUG00000005908	xrn1	97	77.963	ENSTRUG00000004895	xrn1	99	79.418	Takifugu_rubripes
ENSHBUG00000005908	xrn1	99	78.275	ENSTNIG00000017615	xrn1	97	79.403	Tetraodon_nigroviridis
ENSHBUG00000005908	xrn1	84	80.429	ENSTBEG00000003256	XRN1	84	79.028	Tupaia_belangeri
ENSHBUG00000005908	xrn1	98	70.697	ENSTTRG00000012914	XRN1	100	56.676	Tursiops_truncatus
ENSHBUG00000005908	xrn1	98	69.278	ENSUAMG00000001608	XRN1	99	71.722	Ursus_americanus
ENSHBUG00000005908	xrn1	98	73.361	ENSUMAG00000013625	XRN1	94	70.491	Ursus_maritimus
ENSHBUG00000005908	xrn1	98	73.045	ENSVPAG00000004690	XRN1	100	58.210	Vicugna_pacos
ENSHBUG00000005908	xrn1	98	73.814	ENSVVUG00000024461	XRN1	99	75.355	Vulpes_vulpes
ENSHBUG00000005908	xrn1	98	72.279	ENSXETG00000000619	xrn1	99	80.890	Xenopus_tropicalis
ENSHBUG00000005908	xrn1	96	80.842	ENSXCOG00000007917	xrn1	100	77.692	Xiphophorus_couchianus
ENSHBUG00000005908	xrn1	95	83.106	ENSXMAG00000018320	xrn1	98	84.275	Xiphophorus_maculatus