EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000006386 (Gene tree)
Gene ID: 102305605
Gene Symbol: -
Alias: -
Full Name: serine and arginine rich splicing factor 6
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 4915 bases
Position: chrJH425478.1:478135-483049
Accession: 102305605
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000005017	RRM_1	PF00076.22	1.3e-31	1	2
ENSHBUP00000005017	RRM_1	PF00076.22	1.3e-31	2	2
ENSHBUP00000005027	RRM_1	PF00076.22	5.1e-13	1	1
ENSHBUP00000005017	RRM_3	PF08777.11	2e-07	1	1
ENSHBUP00000005027	RRM_3	PF08777.11	2.1e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000007702	-	753	-	ENSHBUP00000005027	250 (aa)	-	-
ENSHBUT00000007712	-	942	XM_005933458	ENSHBUP00000005017	313 (aa)	XP_005933520	-

Gene Model

Click here to download ENSHBUG00000006386's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000006386's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000006386	-	76	52.896	ENSHBUG00000012462	srsf5b	90	60.484
ENSHBUG00000006386	-	53	43.860	ENSHBUG00000019320	srsf9	73	41.711
ENSHBUG00000006386	-	52	43.787	ENSHBUG00000016788	srsf1a	91	38.655
ENSHBUG00000006386	-	57	41.361	ENSHBUG00000015576	-	91	42.917
ENSHBUG00000006386	-	97	69.355	ENSHBUG00000011326	-	66	77.966

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000006386	-	58	83.696	ENSG00000124193	SRSF6	56	89.474	Homo_sapiens
ENSHBUG00000006386	-	58	69.730	ENSAMEG00000003710	SRSF6	63	62.009	Ailuropoda_melanoleuca
ENSHBUG00000006386	-	100	84.615	ENSACIG00000020091	-	100	87.077	Amphilophus_citrinellus
ENSHBUG00000006386	-	99	60.961	ENSACIG00000023658	-	68	72.807	Amphilophus_citrinellus
ENSHBUG00000006386	-	100	86.250	ENSAOCG00000004309	-	100	87.188	Amphiprion_ocellaris
ENSHBUG00000006386	-	57	87.027	ENSAPEG00000013086	-	61	74.678	Amphiprion_percula
ENSHBUG00000006386	-	100	76.730	ENSAPEG00000020746	-	84	83.264	Amphiprion_percula
ENSHBUG00000006386	-	57	96.067	ENSATEG00000007255	-	82	81.659	Anabas_testudineus
ENSHBUG00000006386	-	57	86.188	ENSACAG00000002061	SRSF6	62	73.451	Anolis_carolinensis
ENSHBUG00000006386	-	58	83.696	ENSANAG00000024080	SRSF6	56	89.474	Aotus_nancymaae
ENSHBUG00000006386	-	57	81.720	ENSAMXG00000042692	-	96	80.000	Astyanax_mexicanus
ENSHBUG00000006386	-	57	84.946	ENSAMXG00000003101	-	90	66.667	Astyanax_mexicanus
ENSHBUG00000006386	-	58	84.239	ENSBTAG00000008527	SRSF6	56	90.789	Bos_taurus
ENSHBUG00000006386	-	58	83.696	ENSCJAG00000048403	SRSF6	80	73.684	Callithrix_jacchus
ENSHBUG00000006386	-	58	84.239	ENSCAFG00000009289	SRSF6	56	90.789	Canis_familiaris
ENSHBUG00000006386	-	58	84.239	ENSCAFG00020013559	SRSF6	56	90.789	Canis_lupus_dingo
ENSHBUG00000006386	-	58	84.239	ENSCHIG00000015890	-	56	90.789	Capra_hircus
ENSHBUG00000006386	-	58	83.696	ENSCHIG00000009148	-	63	73.684	Capra_hircus
ENSHBUG00000006386	-	58	63.889	ENSTSYG00000026476	SRSF6	56	56.250	Carlito_syrichta
ENSHBUG00000006386	-	58	78.261	ENSCPOG00000011761	SRSF6	56	89.474	Cavia_porcellus
ENSHBUG00000006386	-	58	75.135	ENSCCAG00000018540	-	75	66.960	Cebus_capucinus
ENSHBUG00000006386	-	58	83.696	ENSCCAG00000026018	-	56	89.474	Cebus_capucinus
ENSHBUG00000006386	-	58	83.696	ENSCATG00000030794	SRSF6	56	89.474	Cercocebus_atys
ENSHBUG00000006386	-	58	83.696	ENSCSAG00000014022	SRSF6	63	73.684	Chlorocebus_sabaeus
ENSHBUG00000006386	-	58	83.422	ENSCPBG00000018200	SRSF6	64	73.593	Chrysemys_picta_bellii
ENSHBUG00000006386	-	58	82.609	ENSCANG00000037774	-	63	72.807	Colobus_angolensis_palliatus
ENSHBUG00000006386	-	58	63.889	ENSCANG00000042529	-	57	56.250	Colobus_angolensis_palliatus
ENSHBUG00000006386	-	58	83.696	ENSCGRG00001022339	Srsf6	100	59.538	Cricetulus_griseus_chok1gshd
ENSHBUG00000006386	-	57	82.888	ENSDARG00000016783	srsf6b	80	92.105	Danio_rerio
ENSHBUG00000006386	-	57	81.006	ENSDARG00000013729	srsf6a	56	75.893	Danio_rerio
ENSHBUG00000006386	-	58	83.696	ENSDNOG00000008410	SRSF6	63	73.684	Dasypus_novemcinctus
ENSHBUG00000006386	-	58	83.696	ENSDORG00000028378	Srsf6	80	65.818	Dipodomys_ordii
ENSHBUG00000006386	-	58	80.328	ENSETEG00000006221	SRSF6	63	70.044	Echinops_telfairi
ENSHBUG00000006386	-	58	84.239	ENSEASG00005023429	SRSF6	63	74.123	Equus_asinus_asinus
ENSHBUG00000006386	-	58	84.239	ENSECAG00000023932	SRSF6	67	74.123	Equus_caballus
ENSHBUG00000006386	-	94	69.205	ENSELUG00000013506	SRSF6	68	93.421	Esox_lucius
ENSHBUG00000006386	-	57	88.172	ENSELUG00000024182	SRSF6	90	81.301	Esox_lucius
ENSHBUG00000006386	-	58	84.239	ENSFCAG00000032814	SRSF6	63	74.123	Felis_catus
ENSHBUG00000006386	-	58	63.889	ENSFDAG00000012191	SRSF6	57	56.250	Fukomys_damarensis
ENSHBUG00000006386	-	98	69.497	ENSFHEG00000023065	srsf6a	66	78.879	Fundulus_heteroclitus
ENSHBUG00000006386	-	77	83.871	ENSGMOG00000014458	srsf6a	63	76.230	Gadus_morhua
ENSHBUG00000006386	-	56	74.857	ENSGMOG00000006105	srsf6a	81	66.960	Gadus_morhua
ENSHBUG00000006386	-	57	82.353	ENSGALG00000000990	SRSF6	96	60.417	Gallus_gallus
ENSHBUG00000006386	-	58	84.530	ENSGACG00000006084	srsf6a	68	77.731	Gasterosteus_aculeatus
ENSHBUG00000006386	-	58	83.422	ENSGAGG00000003238	SRSF6	64	73.593	Gopherus_agassizii
ENSHBUG00000006386	-	58	83.696	ENSGGOG00000009808	SRSF6	56	89.474	Gorilla_gorilla
ENSHBUG00000006386	-	60	68.229	ENSHGLG00000007701	-	71	59.821	Heterocephalus_glaber_female
ENSHBUG00000006386	-	58	63.889	ENSHGLG00100005043	SRSF6	57	56.250	Heterocephalus_glaber_male
ENSHBUG00000006386	-	94	67.347	ENSHCOG00000002740	srsf6a	68	77.729	Hippocampus_comes
ENSHBUG00000006386	-	57	84.324	ENSIPUG00000004776	-	81	76.957	Ictalurus_punctatus
ENSHBUG00000006386	-	55	86.047	ENSIPUG00000016856	SRSF6	99	68.142	Ictalurus_punctatus
ENSHBUG00000006386	-	58	83.696	ENSSTOG00000010866	SRSF6	100	60.116	Ictidomys_tridecemlineatus
ENSHBUG00000006386	-	86	58.333	ENSKMAG00000011934	srsf6a	100	66.462	Kryptolebias_marmoratus
ENSHBUG00000006386	-	57	85.870	ENSLBEG00000007356	srsf6a	74	67.424	Labrus_bergylta
ENSHBUG00000006386	-	57	78.090	ENSLACG00000009389	-	54	63.774	Latimeria_chalumnae
ENSHBUG00000006386	-	95	66.129	ENSLACG00000005466	SRSF6	66	74.043	Latimeria_chalumnae
ENSHBUG00000006386	-	58	83.696	ENSMFAG00000036925	SRSF6	56	89.474	Macaca_fascicularis
ENSHBUG00000006386	-	58	83.696	ENSMMUG00000006742	SRSF6	56	89.474	Macaca_mulatta
ENSHBUG00000006386	-	58	83.152	ENSMNEG00000038270	-	63	73.246	Macaca_nemestrina
ENSHBUG00000006386	-	58	83.152	ENSMNEG00000027392	-	56	88.158	Macaca_nemestrina
ENSHBUG00000006386	-	97	62.824	ENSMAMG00000017161	srsf6a	63	76.923	Mastacembelus_armatus
ENSHBUG00000006386	-	100	93.396	ENSMZEG00005008032	-	100	94.340	Maylandia_zebra
ENSHBUG00000006386	-	100	63.578	ENSMZEG00005020658	-	71	70.742	Maylandia_zebra
ENSHBUG00000006386	-	58	83.152	ENSMICG00000008537	SRSF6	100	58.261	Microcebus_murinus
ENSHBUG00000006386	-	58	83.243	ENSMODG00000003107	SRSF6	64	73.799	Monodelphis_domestica
ENSHBUG00000006386	-	58	83.696	MGP_CAROLIEiJ_G0024606	Srsf6	56	89.474	Mus_caroli
ENSHBUG00000006386	-	58	83.696	ENSMUSG00000016921	Srsf6	100	59.538	Mus_musculus
ENSHBUG00000006386	-	58	83.696	MGP_PahariEiJ_G0026050	Srsf6	56	89.474	Mus_pahari
ENSHBUG00000006386	-	58	83.696	MGP_SPRETEiJ_G0025528	Srsf6	100	59.538	Mus_spretus
ENSHBUG00000006386	-	58	84.239	ENSMPUG00000017692	SRSF6	75	74.123	Mustela_putorius_furo
ENSHBUG00000006386	-	58	58.454	ENSMLUG00000016618	SRSF6	63	52.590	Myotis_lucifugus
ENSHBUG00000006386	-	58	83.696	ENSNGAG00000017560	Srsf6	56	89.474	Nannospalax_galili
ENSHBUG00000006386	-	100	99.361	ENSNBRG00000014709	-	100	99.361	Neolamprologus_brichardi
ENSHBUG00000006386	-	57	86.339	ENSNBRG00000001846	-	94	66.964	Neolamprologus_brichardi
ENSHBUG00000006386	-	58	83.696	ENSNLEG00000006524	SRSF6	56	89.474	Nomascus_leucogenys
ENSHBUG00000006386	-	58	83.243	ENSMEUG00000014615	SRSF6	72	73.799	Notamacropus_eugenii
ENSHBUG00000006386	-	86	65.899	ENSONIG00000001925	-	68	78.008	Oreochromis_niloticus
ENSHBUG00000006386	-	100	90.588	ENSONIG00000020247	-	100	87.353	Oreochromis_niloticus
ENSHBUG00000006386	-	56	54.286	ENSOCUG00000023999	-	82	48.416	Oryctolagus_cuniculus
ENSHBUG00000006386	-	58	68.063	ENSOCUG00000009785	-	74	59.402	Oryctolagus_cuniculus
ENSHBUG00000006386	-	57	77.654	ENSORLG00000003530	srsf6a	58	70.175	Oryzias_latipes
ENSHBUG00000006386	-	57	77.095	ENSORLG00015009410	srsf6a	58	69.737	Oryzias_latipes_hsok
ENSHBUG00000006386	-	58	74.444	ENSOMEG00000006001	srsf6a	67	62.151	Oryzias_melastigma
ENSHBUG00000006386	-	58	83.152	ENSOGAG00000014468	SRSF6	92	61.442	Otolemur_garnettii
ENSHBUG00000006386	-	58	82.514	ENSOARG00000003117	SRSF6	63	70.925	Ovis_aries
ENSHBUG00000006386	-	58	71.667	ENSPPAG00000043131	-	68	64.758	Pan_paniscus
ENSHBUG00000006386	-	58	83.152	ENSPPAG00000034327	-	73	61.000	Pan_paniscus
ENSHBUG00000006386	-	58	84.239	ENSPPRG00000008917	SRSF6	63	74.123	Panthera_pardus
ENSHBUG00000006386	-	58	71.667	ENSPTRG00000046274	-	68	64.758	Pan_troglodytes
ENSHBUG00000006386	-	58	83.696	ENSPTRG00000044686	-	56	89.474	Pan_troglodytes
ENSHBUG00000006386	-	58	83.696	ENSPANG00000035224	SRSF6	56	89.474	Papio_anubis
ENSHBUG00000006386	-	56	74.157	ENSPKIG00000015703	-	83	68.468	Paramormyrops_kingsleyae
ENSHBUG00000006386	-	94	68.471	ENSPKIG00000018463	-	75	90.789	Paramormyrops_kingsleyae
ENSHBUG00000006386	-	95	68.153	ENSPMGG00000014963	srsf6a	65	77.586	Periophthalmus_magnuspinnatus
ENSHBUG00000006386	-	58	83.243	ENSPCIG00000003820	SRSF6	56	89.474	Phascolarctos_cinereus
ENSHBUG00000006386	-	57	81.481	ENSPFOG00000006437	srsf6a	59	74.370	Poecilia_formosa
ENSHBUG00000006386	-	98	59.587	ENSPLAG00000009243	srsf6a	79	79.365	Poecilia_latipinna
ENSHBUG00000006386	-	57	83.696	ENSPMEG00000006042	SRSF6	66	76.170	Poecilia_mexicana
ENSHBUG00000006386	-	58	83.696	ENSPPYG00000011019	SRSF6	73	61.333	Pongo_abelii
ENSHBUG00000006386	-	58	84.239	ENSPCAG00000010954	SRSF6	65	74.123	Procavia_capensis
ENSHBUG00000006386	-	58	83.152	ENSPCOG00000026364	SRSF6	56	89.474	Propithecus_coquereli
ENSHBUG00000006386	-	58	83.696	ENSPVAG00000015232	SRSF6	63	73.684	Pteropus_vampyrus
ENSHBUG00000006386	-	100	99.681	ENSPNYG00000004944	-	100	99.681	Pundamilia_nyererei
ENSHBUG00000006386	-	57	86.339	ENSPNYG00000011272	-	51	85.405	Pundamilia_nyererei
ENSHBUG00000006386	-	58	83.696	ENSRNOG00000006380	Srsf6	100	59.538	Rattus_norvegicus
ENSHBUG00000006386	-	58	84.444	ENSRBIG00000041414	SRSF6	58	89.474	Rhinopithecus_bieti
ENSHBUG00000006386	-	58	83.696	ENSRROG00000029989	SRSF6	56	89.474	Rhinopithecus_roxellana
ENSHBUG00000006386	-	57	70.950	ENSSBOG00000034078	-	61	57.447	Saimiri_boliviensis_boliviensis
ENSHBUG00000006386	-	58	83.696	ENSSBOG00000033708	-	56	89.474	Saimiri_boliviensis_boliviensis
ENSHBUG00000006386	-	58	83.243	ENSSHAG00000012805	SRSF6	64	73.799	Sarcophilus_harrisii
ENSHBUG00000006386	-	57	83.420	ENSSFOG00015019681	-	81	67.568	Scleropages_formosus
ENSHBUG00000006386	-	57	86.667	ENSSFOG00015015169	SRSF6	73	78.298	Scleropages_formosus
ENSHBUG00000006386	-	96	76.415	ENSSMAG00000017447	-	72	83.966	Scophthalmus_maximus
ENSHBUG00000006386	-	90	67.544	ENSSMAG00000014819	-	60	65.644	Scophthalmus_maximus
ENSHBUG00000006386	-	57	86.486	ENSSDUG00000016097	srsf6a	100	63.636	Seriola_dumerili
ENSHBUG00000006386	-	98	59.877	ENSSLDG00000022841	srsf6a	100	62.242	Seriola_lalandi_dorsalis
ENSHBUG00000006386	-	57	87.293	ENSSPUG00000004967	SRSF6	56	89.474	Sphenodon_punctatus
ENSHBUG00000006386	-	82	70.943	ENSSPAG00000002362	srsf6a	66	82.979	Stegastes_partitus
ENSHBUG00000006386	-	58	84.239	ENSSSCG00000007362	SRSF6	72	74.123	Sus_scrofa
ENSHBUG00000006386	-	57	83.696	ENSTGUG00000003455	SRSF6	72	71.200	Taeniopygia_guttata
ENSHBUG00000006386	-	97	68.489	ENSTNIG00000001692	srsf6a	73	77.731	Tetraodon_nigroviridis
ENSHBUG00000006386	-	58	84.239	ENSUAMG00000003559	SRSF6	56	90.789	Ursus_americanus
ENSHBUG00000006386	-	57	85.635	ENSXMAG00000021849	srsf6a	69	74.783	Xiphophorus_maculatus