EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000006869 (Gene tree)
Gene ID: 102313123
Gene Symbol: ncl
Alias: fa12d03|wu:fa12d03|zgc:152810
Full Name: nucleolin
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 10479 bases
Position: chrJH425360.1:1207085-1217563
Accession: 102313123
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000025058	RRM_1	PF00076.22	1.7e-57	1	4
ENSHBUP00000025058	RRM_1	PF00076.22	1.7e-57	2	4
ENSHBUP00000025058	RRM_1	PF00076.22	1.7e-57	3	4
ENSHBUP00000025058	RRM_1	PF00076.22	1.7e-57	4	4
ENSHBUP00000005464	RRM_1	PF00076.22	1.8e-57	1	4
ENSHBUP00000005464	RRM_1	PF00076.22	1.8e-57	2	4
ENSHBUP00000005464	RRM_1	PF00076.22	1.8e-57	3	4
ENSHBUP00000005464	RRM_1	PF00076.22	1.8e-57	4	4

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000006962	-	6104	-	ENSHBUP00000025058	694 (aa)	-	-
ENSHBUT00000006945	-	6027	XM_005920924	ENSHBUP00000005464	698 (aa)	XP_005920986	UPI0003BC6322

Gene Model

Click here to download ENSHBUG00000006869's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000006869's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000006869	ncl	55	37.113	ENSHBUG00000006683	-	91	37.398
ENSHBUG00000006869	ncl	50	33.333	ENSHBUG00000006134	pabpc1l	59	33.333

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000006869	ncl	60	80.806	ENSAPOG00000023888	ncl	56	82.796	Acanthochromis_polyacanthus
ENSHBUG00000006869	ncl	58	42.857	ENSAPOG00000014534	-	67	43.081	Acanthochromis_polyacanthus
ENSHBUG00000006869	ncl	70	91.057	ENSACIG00000013234	ncl	62	90.515	Amphilophus_citrinellus
ENSHBUG00000006869	ncl	71	39.147	ENSAOCG00000014792	-	61	42.746	Amphiprion_ocellaris
ENSHBUG00000006869	ncl	71	38.953	ENSAPEG00000013612	-	60	42.487	Amphiprion_percula
ENSHBUG00000006869	ncl	60	81.754	ENSAPEG00000002769	ncl	52	83.065	Amphiprion_percula
ENSHBUG00000006869	ncl	62	45.534	ENSATEG00000019862	-	85	45.763	Anabas_testudineus
ENSHBUG00000006869	ncl	53	62.992	ENSACAG00000001006	-	52	62.895	Anolis_carolinensis
ENSHBUG00000006869	ncl	52	95.050	ENSACLG00000026031	ncl	82	95.050	Astatotilapia_calliptera
ENSHBUG00000006869	ncl	58	65.854	ENSAMXG00000001647	ncl	83	69.000	Astyanax_mexicanus
ENSHBUG00000006869	ncl	89	52.535	ENSCPBG00000016444	-	56	62.797	Chrysemys_picta_bellii
ENSHBUG00000006869	ncl	67	78.723	ENSCSEG00000015089	ncl	57	75.532	Cynoglossus_semilaevis
ENSHBUG00000006869	ncl	52	77.657	ENSCVAG00000012600	ncl	54	77.568	Cyprinodon_variegatus
ENSHBUG00000006869	ncl	60	72.471	ENSDARG00000002710	ncl	79	73.139	Danio_rerio
ENSHBUG00000006869	ncl	76	44.898	ENSDNOG00000031611	-	66	45.553	Dasypus_novemcinctus
ENSHBUG00000006869	ncl	51	50.000	ENSDNOG00000040257	-	61	49.180	Dasypus_novemcinctus
ENSHBUG00000006869	ncl	69	48.297	ENSEBUG00000016173	ncl	56	43.287	Eptatretus_burgeri
ENSHBUG00000006869	ncl	61	48.478	ENSELUG00000022826	-	81	50.532	Esox_lucius
ENSHBUG00000006869	ncl	60	70.423	ENSELUG00000006033	ncl	56	70.745	Esox_lucius
ENSHBUG00000006869	ncl	73	58.730	ENSFALG00000007592	-	55	58.225	Ficedula_albicollis
ENSHBUG00000006869	ncl	71	77.027	ENSFHEG00000018000	ncl	65	76.303	Fundulus_heteroclitus
ENSHBUG00000006869	ncl	54	66.667	ENSGMOG00000001341	ncl	59	66.310	Gadus_morhua
ENSHBUG00000006869	ncl	72	59.947	ENSGALG00000032930	NCL	55	59.424	Gallus_gallus
ENSHBUG00000006869	ncl	89	66.218	ENSGAFG00000015375	ncl	50	77.297	Gambusia_affinis
ENSHBUG00000006869	ncl	89	67.773	ENSGACG00000008970	ncl	86	77.419	Gasterosteus_aculeatus
ENSHBUG00000006869	ncl	89	50.920	ENSGAGG00000013330	-	56	62.005	Gopherus_agassizii
ENSHBUG00000006869	ncl	69	71.026	ENSHCOG00000010234	ncl	66	76.676	Hippocampus_comes
ENSHBUG00000006869	ncl	52	70.820	ENSIPUG00000024556	ncl	81	71.148	Ictalurus_punctatus
ENSHBUG00000006869	ncl	60	77.251	ENSKMAG00000008111	ncl	53	79.459	Kryptolebias_marmoratus
ENSHBUG00000006869	ncl	52	43.008	ENSLBEG00000014278	-	81	43.017	Labrus_bergylta
ENSHBUG00000006869	ncl	60	79.147	ENSLBEG00000019073	ncl	56	81.183	Labrus_bergylta
ENSHBUG00000006869	ncl	55	43.392	ENSLBEG00000007915	-	65	43.194	Labrus_bergylta
ENSHBUG00000006869	ncl	66	60.504	ENSLACG00000009328	ncl	71	60.317	Latimeria_chalumnae
ENSHBUG00000006869	ncl	59	51.699	ENSLACG00000022167	-	79	52.547	Latimeria_chalumnae
ENSHBUG00000006869	ncl	66	60.554	ENSLOCG00000004828	ncl	70	64.879	Lepisosteus_oculatus
ENSHBUG00000006869	ncl	57	42.344	ENSMAMG00000003479	-	69	42.448	Mastacembelus_armatus
ENSHBUG00000006869	ncl	100	97.863	ENSMZEG00005017438	ncl	100	97.863	Maylandia_zebra
ENSHBUG00000006869	ncl	52	59.350	ENSMGAG00000008147	-	86	59.030	Meleagris_gallopavo
ENSHBUG00000006869	ncl	57	78.338	ENSMMOG00000008553	ncl	83	82.051	Mola_mola
ENSHBUG00000006869	ncl	50	46.254	ENSMPUG00000001663	-	66	46.254	Mustela_putorius_furo
ENSHBUG00000006869	ncl	60	100.000	ENSNBRG00000000146	-	99	100.000	Neolamprologus_brichardi
ENSHBUG00000006869	ncl	63	100.000	ENSNBRG00000001232	ncl	100	100.000	Neolamprologus_brichardi
ENSHBUG00000006869	ncl	52	58.333	ENSMEUG00000012335	-	55	57.520	Notamacropus_eugenii
ENSHBUG00000006869	ncl	100	98.159	ENSONIG00000012508	ncl	100	98.159	Oreochromis_niloticus
ENSHBUG00000006869	ncl	53	38.919	ENSONIG00000010631	-	95	39.024	Oreochromis_niloticus
ENSHBUG00000006869	ncl	53	59.481	ENSOANG00000008732	-	61	60.000	Ornithorhynchus_anatinus
ENSHBUG00000006869	ncl	51	79.330	ENSORLG00000007055	ncl	58	76.815	Oryzias_latipes
ENSHBUG00000006869	ncl	58	38.942	ENSORLG00000004645	-	83	40.526	Oryzias_latipes
ENSHBUG00000006869	ncl	60	76.066	ENSORLG00020017943	ncl	51	78.706	Oryzias_latipes_hni
ENSHBUG00000006869	ncl	58	39.563	ENSORLG00020003497	-	74	40.526	Oryzias_latipes_hni
ENSHBUG00000006869	ncl	51	77.778	ENSORLG00015013815	ncl	85	77.451	Oryzias_latipes_hsok
ENSHBUG00000006869	ncl	58	39.855	ENSORLG00015006613	-	77	41.053	Oryzias_latipes_hsok
ENSHBUG00000006869	ncl	55	41.000	ENSOMEG00000015864	-	82	41.316	Oryzias_melastigma
ENSHBUG00000006869	ncl	78	71.059	ENSPKIG00000002604	ncl	53	73.190	Paramormyrops_kingsleyae
ENSHBUG00000006869	ncl	54	60.000	ENSPSIG00000002361	-	53	60.313	Pelodiscus_sinensis
ENSHBUG00000006869	ncl	60	71.734	ENSPMGG00000004709	ncl	79	72.787	Periophthalmus_magnuspinnatus
ENSHBUG00000006869	ncl	52	56.728	ENSPCIG00000003293	-	54	56.218	Phascolarctos_cinereus
ENSHBUG00000006869	ncl	66	75.699	ENSPFOG00000024205	ncl	57	77.488	Poecilia_formosa
ENSHBUG00000006869	ncl	66	75.269	ENSPLAG00000024026	ncl	50	78.378	Poecilia_latipinna
ENSHBUG00000006869	ncl	66	75.484	ENSPMEG00000006000	ncl	50	78.378	Poecilia_mexicana
ENSHBUG00000006869	ncl	100	98.140	ENSPNYG00000020494	ncl	100	98.140	Pundamilia_nyererei
ENSHBUG00000006869	ncl	60	68.322	ENSPNAG00000006192	ncl	51	69.867	Pygocentrus_nattereri
ENSHBUG00000006869	ncl	52	52.957	ENSSHAG00000002702	-	62	50.363	Sarcophilus_harrisii
ENSHBUG00000006869	ncl	64	68.527	ENSSFOG00015008583	ncl	56	74.531	Scleropages_formosus
ENSHBUG00000006869	ncl	59	43.714	ENSSFOG00015013153	-	75	45.875	Scleropages_formosus
ENSHBUG00000006869	ncl	70	38.848	ENSSMAG00000007582	-	62	45.789	Scophthalmus_maximus
ENSHBUG00000006869	ncl	89	70.747	ENSSMAG00000021241	ncl	53	79.200	Scophthalmus_maximus
ENSHBUG00000006869	ncl	77	75.926	ENSSDUG00000006128	ncl	85	81.452	Seriola_dumerili
ENSHBUG00000006869	ncl	66	40.756	ENSSDUG00000010922	-	70	44.357	Seriola_dumerili
ENSHBUG00000006869	ncl	69	78.144	ENSSLDG00000002012	ncl	53	81.183	Seriola_lalandi_dorsalis
ENSHBUG00000006869	ncl	59	42.857	ENSSLDG00000015784	-	71	43.269	Seriola_lalandi_dorsalis
ENSHBUG00000006869	ncl	53	60.513	ENSSPUG00000008244	-	54	60.733	Sphenodon_punctatus
ENSHBUG00000006869	ncl	52	80.142	ENSSPAG00000002637	ncl	79	80.142	Stegastes_partitus
ENSHBUG00000006869	ncl	56	44.363	ENSSPAG00000001859	-	67	43.032	Stegastes_partitus
ENSHBUG00000006869	ncl	71	58.777	ENSTGUG00000009782	-	61	57.853	Taeniopygia_guttata
ENSHBUG00000006869	ncl	51	76.257	ENSTNIG00000012186	ncl	61	76.075	Tetraodon_nigroviridis
ENSHBUG00000006869	ncl	53	61.111	ENSXETG00000009517	ncl	61	54.907	Xenopus_tropicalis
ENSHBUG00000006869	ncl	54	47.785	ENSXCOG00000003524	ncl	85	61.702	Xiphophorus_couchianus
ENSHBUG00000006869	ncl	53	40.318	ENSXCOG00000007369	-	89	40.053	Xiphophorus_couchianus
ENSHBUG00000006869	ncl	66	74.730	ENSXMAG00000005914	ncl	51	77.568	Xiphophorus_maculatus