EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000007581 (Gene tree)
Gene ID: 102293830
Gene Symbol: srl
Alias: im:6899248|wu:fb94b10|zgc:153844
Full Name: sarcalumenin
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 13217 bases
Position: chrJH425718.1:331628-344844
Accession: 102293830
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000006183	MMR_HSR1	PF01926.23	2.7e-08	1	1
ENSHBUP00000006179	MMR_HSR1	PF01926.23	2.8e-08	1	1
ENSHBUP00000025512	MMR_HSR1	PF01926.23	2.8e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000005743	-	2669	XM_005943987	ENSHBUP00000006183	482 (aa)	XP_005944049	UPI0003297560
ENSHBUT00000005756	-	2633	XM_005943988	ENSHBUP00000006179	470 (aa)	XP_005944050	UPI000329D814
ENSHBUT00000005772	-	1371	-	ENSHBUP00000025512	456 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000007581's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000007581's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000007581	srl	90	32.297	ENSHBUG00000009900	ehd2b	74	32.297
ENSHBUG00000007581	srl	88	32.754	ENSHBUG00000016153	ehd4	71	32.754
ENSHBUG00000007581	srl	90	31.311	ENSHBUG00000008791	-	73	31.311
ENSHBUG00000007581	srl	85	31.795	ENSHBUG00000012087	ehd1a	71	31.795
ENSHBUG00000007581	srl	82	32.976	ENSHBUG00000023210	ehd3	70	33.333
ENSHBUG00000007581	srl	99	74.839	ENSHBUG00000015710	SRL	58	74.839

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000007581	srl	97	83.032	ENSG00000185739	SRL	99	83.256	Homo_sapiens
ENSHBUG00000007581	srl	97	77.201	ENSAPOG00000012432	SRL	99	77.201	Acanthochromis_polyacanthus
ENSHBUG00000007581	srl	100	96.815	ENSAPOG00000018093	srl	100	96.815	Acanthochromis_polyacanthus
ENSHBUG00000007581	srl	98	82.000	ENSAMEG00000010862	SRL	51	82.000	Ailuropoda_melanoleuca
ENSHBUG00000007581	srl	98	98.441	ENSACIG00000015799	srl	100	98.670	Amphilophus_citrinellus
ENSHBUG00000007581	srl	98	75.670	ENSACIG00000015419	SRL	99	75.670	Amphilophus_citrinellus
ENSHBUG00000007581	srl	95	97.465	ENSAOCG00000007574	srl	100	97.465	Amphiprion_ocellaris
ENSHBUG00000007581	srl	99	76.380	ENSAOCG00000017049	SRL	100	75.870	Amphiprion_ocellaris
ENSHBUG00000007581	srl	99	73.230	ENSAPEG00000006533	SRL	100	73.043	Amphiprion_percula
ENSHBUG00000007581	srl	100	97.101	ENSAPEG00000006911	srl	100	97.101	Amphiprion_percula
ENSHBUG00000007581	srl	100	96.687	ENSATEG00000024315	srl	100	96.687	Anabas_testudineus
ENSHBUG00000007581	srl	98	76.356	ENSATEG00000009643	SRL	53	76.573	Anabas_testudineus
ENSHBUG00000007581	srl	97	82.340	ENSACAG00000016380	SRL	89	81.352	Anolis_carolinensis
ENSHBUG00000007581	srl	99	74.569	ENSACLG00000024674	SRL	58	74.569	Astatotilapia_calliptera
ENSHBUG00000007581	srl	100	100.000	ENSACLG00000027685	srl	100	100.000	Astatotilapia_calliptera
ENSHBUG00000007581	srl	99	92.308	ENSAMXG00000018789	srl	92	92.308	Astyanax_mexicanus
ENSHBUG00000007581	srl	92	77.857	ENSAMXG00000038693	SRL	100	73.951	Astyanax_mexicanus
ENSHBUG00000007581	srl	98	83.073	ENSBTAG00000001078	SRL	58	82.237	Bos_taurus
ENSHBUG00000007581	srl	97	83.032	ENSCJAG00000019750	SRL	98	81.075	Callithrix_jacchus
ENSHBUG00000007581	srl	97	82.805	ENSCAFG00000019233	SRL	86	80.435	Canis_familiaris
ENSHBUG00000007581	srl	97	82.805	ENSCAFG00020025024	SRL	56	81.678	Canis_lupus_dingo
ENSHBUG00000007581	srl	98	83.073	ENSCHIG00000017927	SRL	57	82.637	Capra_hircus
ENSHBUG00000007581	srl	98	82.667	ENSTSYG00000007919	SRL	99	83.953	Carlito_syrichta
ENSHBUG00000007581	srl	98	82.444	ENSCPOG00000012643	SRL	98	81.505	Cavia_porcellus
ENSHBUG00000007581	srl	97	77.602	ENSCCAG00000032646	SRL	100	84.433	Cebus_capucinus
ENSHBUG00000007581	srl	97	83.032	ENSCATG00000032227	-	98	81.075	Cercocebus_atys
ENSHBUG00000007581	srl	98	82.667	ENSCLAG00000016242	SRL	98	81.720	Chinchilla_lanigera
ENSHBUG00000007581	srl	84	85.974	ENSCHOG00000001618	SRL	52	85.974	Choloepus_hoffmanni
ENSHBUG00000007581	srl	98	85.492	ENSCPBG00000026371	SRL	99	81.590	Chrysemys_picta_bellii
ENSHBUG00000007581	srl	91	60.911	ENSCING00000005231	-	93	60.911	Ciona_intestinalis
ENSHBUG00000007581	srl	97	83.032	ENSCANG00000035872	SRL	99	83.256	Colobus_angolensis_palliatus
ENSHBUG00000007581	srl	98	83.333	ENSCGRG00001016630	Srl	98	82.151	Cricetulus_griseus_chok1gshd
ENSHBUG00000007581	srl	98	83.333	ENSCGRG00000005458	Srl	98	82.151	Cricetulus_griseus_crigri
ENSHBUG00000007581	srl	98	75.501	ENSCSEG00000011866	SRL	95	73.248	Cynoglossus_semilaevis
ENSHBUG00000007581	srl	100	96.178	ENSCSEG00000016151	srl	100	96.178	Cynoglossus_semilaevis
ENSHBUG00000007581	srl	100	92.946	ENSCVAG00000003513	srl	100	94.410	Cyprinodon_variegatus
ENSHBUG00000007581	srl	98	76.638	ENSCVAG00000022465	SRL	61	76.638	Cyprinodon_variegatus
ENSHBUG00000007581	srl	100	91.494	ENSDARG00000104587	srl	100	91.494	Danio_rerio
ENSHBUG00000007581	srl	83	78.646	ENSDARG00000112959	CABZ01072309.1	100	78.646	Danio_rerio
ENSHBUG00000007581	srl	98	82.667	ENSDNOG00000011643	SRL	54	82.667	Dasypus_novemcinctus
ENSHBUG00000007581	srl	98	83.111	ENSDORG00000014807	Srl	98	82.151	Dipodomys_ordii
ENSHBUG00000007581	srl	81	65.775	ENSEBUG00000015937	srl	94	65.775	Eptatretus_burgeri
ENSHBUG00000007581	srl	98	82.628	ENSEASG00005000942	SRL	55	81.798	Equus_asinus_asinus
ENSHBUG00000007581	srl	98	82.628	ENSECAG00000024219	SRL	98	81.681	Equus_caballus
ENSHBUG00000007581	srl	100	87.064	ENSELUG00000015616	srl	100	87.064	Esox_lucius
ENSHBUG00000007581	srl	97	82.579	ENSFCAG00000022075	SRL	98	80.645	Felis_catus
ENSHBUG00000007581	srl	96	83.636	ENSFALG00000004328	SRL	63	83.636	Ficedula_albicollis
ENSHBUG00000007581	srl	99	82.637	ENSFDAG00000006199	SRL	98	82.581	Fukomys_damarensis
ENSHBUG00000007581	srl	98	77.130	ENSFHEG00000011854	SRL	99	77.354	Fundulus_heteroclitus
ENSHBUG00000007581	srl	100	94.617	ENSFHEG00000011239	srl	100	94.617	Fundulus_heteroclitus
ENSHBUG00000007581	srl	97	89.648	ENSGMOG00000014954	srl	100	91.850	Gadus_morhua
ENSHBUG00000007581	srl	96	83.864	ENSGALG00000038884	SRL	98	81.857	Gallus_gallus
ENSHBUG00000007581	srl	98	78.348	ENSGAFG00000016984	SRL	100	78.174	Gambusia_affinis
ENSHBUG00000007581	srl	100	94.824	ENSGAFG00000000010	srl	100	94.824	Gambusia_affinis
ENSHBUG00000007581	srl	97	94.286	ENSGACG00000011332	srl	100	96.703	Gasterosteus_aculeatus
ENSHBUG00000007581	srl	97	83.032	ENSGGOG00000011312	-	98	80.860	Gorilla_gorilla
ENSHBUG00000007581	srl	98	83.111	ENSHGLG00000015271	SRL	98	82.151	Heterocephalus_glaber_female
ENSHBUG00000007581	srl	98	83.111	ENSHGLG00100019378	SRL	98	82.151	Heterocephalus_glaber_male
ENSHBUG00000007581	srl	100	95.127	ENSHCOG00000008687	srl	99	96.429	Hippocampus_comes
ENSHBUG00000007581	srl	99	74.514	ENSHCOG00000001012	SRL	51	74.514	Hippocampus_comes
ENSHBUG00000007581	srl	100	91.097	ENSIPUG00000012513	srl	100	91.097	Ictalurus_punctatus
ENSHBUG00000007581	srl	96	70.183	ENSIPUG00000011609	SRL	95	70.183	Ictalurus_punctatus
ENSHBUG00000007581	srl	98	82.889	ENSSTOG00000021151	-	98	81.720	Ictidomys_tridecemlineatus
ENSHBUG00000007581	srl	99	82.581	ENSJJAG00000016400	Srl	98	82.581	Jaculus_jaculus
ENSHBUG00000007581	srl	97	77.098	ENSKMAG00000019537	SRL	100	77.098	Kryptolebias_marmoratus
ENSHBUG00000007581	srl	98	94.503	ENSKMAG00000014115	srl	95	94.503	Kryptolebias_marmoratus
ENSHBUG00000007581	srl	100	95.966	ENSLBEG00000026643	srl	100	95.966	Labrus_bergylta
ENSHBUG00000007581	srl	97	76.018	ENSLBEG00000013811	SRL	99	74.510	Labrus_bergylta
ENSHBUG00000007581	srl	100	82.609	ENSLACG00000002825	SRL	100	83.850	Latimeria_chalumnae
ENSHBUG00000007581	srl	99	88.571	ENSLOCG00000002644	srl	99	87.393	Lepisosteus_oculatus
ENSHBUG00000007581	srl	98	82.000	ENSLAFG00000006329	SRL	52	81.898	Loxodonta_africana
ENSHBUG00000007581	srl	94	83.256	ENSMFAG00000037383	SRL	99	83.256	Macaca_fascicularis
ENSHBUG00000007581	srl	97	83.032	ENSMNEG00000019236	-	97	81.004	Macaca_nemestrina
ENSHBUG00000007581	srl	97	76.018	ENSMLEG00000032156	SRL	98	74.409	Mandrillus_leucophaeus
ENSHBUG00000007581	srl	97	76.211	ENSMAMG00000013756	SRL	53	76.211	Mastacembelus_armatus
ENSHBUG00000007581	srl	97	97.072	ENSMAMG00000023322	srl	99	94.218	Mastacembelus_armatus
ENSHBUG00000007581	srl	99	74.624	ENSMZEG00005004010	SRL	59	74.359	Maylandia_zebra
ENSHBUG00000007581	srl	100	100.000	ENSMZEG00005004548	srl	100	100.000	Maylandia_zebra
ENSHBUG00000007581	srl	96	83.864	ENSMGAG00000009342	SRL	97	83.290	Meleagris_gallopavo
ENSHBUG00000007581	srl	98	82.444	ENSMICG00000032307	SRL	98	81.290	Microcebus_murinus
ENSHBUG00000007581	srl	98	82.667	ENSMOCG00000008208	Srl	100	79.873	Microtus_ochrogaster
ENSHBUG00000007581	srl	97	74.945	ENSMMOG00000021572	SRL	99	75.165	Mola_mola
ENSHBUG00000007581	srl	98	95.768	ENSMMOG00000013970	srl	100	96.000	Mola_mola
ENSHBUG00000007581	srl	98	83.482	ENSMODG00000016380	-	51	83.370	Monodelphis_domestica
ENSHBUG00000007581	srl	99	95.133	ENSMALG00000005039	srl	100	95.133	Monopterus_albus
ENSHBUG00000007581	srl	92	78.043	ENSMALG00000000670	SRL	98	78.043	Monopterus_albus
ENSHBUG00000007581	srl	97	84.842	MGP_CAROLIEiJ_G0020400	Srl	98	82.759	Mus_caroli
ENSHBUG00000007581	srl	97	84.842	ENSMUSG00000022519	Srl	98	82.759	Mus_musculus
ENSHBUG00000007581	srl	97	84.842	MGP_SPRETEiJ_G0021294	Srl	98	82.759	Mus_spretus
ENSHBUG00000007581	srl	98	82.000	ENSMPUG00000015025	SRL	55	82.000	Mustela_putorius_furo
ENSHBUG00000007581	srl	98	82.889	ENSMLUG00000030733	SRL	58	82.314	Myotis_lucifugus
ENSHBUG00000007581	srl	98	83.778	ENSNGAG00000019741	Srl	98	82.328	Nannospalax_galili
ENSHBUG00000007581	srl	100	99.574	ENSNBRG00000023775	srl	100	99.574	Neolamprologus_brichardi
ENSHBUG00000007581	srl	99	74.194	ENSNBRG00000002422	SRL	56	76.620	Neolamprologus_brichardi
ENSHBUG00000007581	srl	97	77.376	ENSNLEG00000029051	SRL	98	75.269	Nomascus_leucogenys
ENSHBUG00000007581	srl	98	76.667	ENSOPRG00000000477	-	53	76.667	Ochotona_princeps
ENSHBUG00000007581	srl	97	83.937	ENSODEG00000013256	SRL	98	81.681	Octodon_degus
ENSHBUG00000007581	srl	100	99.585	ENSONIG00000005192	srl	100	99.585	Oreochromis_niloticus
ENSHBUG00000007581	srl	99	80.435	ENSOCUG00000025140	SRL	51	80.435	Oryctolagus_cuniculus
ENSHBUG00000007581	srl	97	75.000	ENSORLG00000015064	SRL	97	75.169	Oryzias_latipes
ENSHBUG00000007581	srl	100	95.643	ENSORLG00000008291	srl	97	96.687	Oryzias_latipes
ENSHBUG00000007581	srl	100	97.101	ENSORLG00020019784	srl	85	97.101	Oryzias_latipes_hni
ENSHBUG00000007581	srl	97	75.225	ENSORLG00020018173	SRL	97	75.395	Oryzias_latipes_hni
ENSHBUG00000007581	srl	97	75.395	ENSORLG00015019063	SRL	97	75.395	Oryzias_latipes_hsok
ENSHBUG00000007581	srl	100	95.643	ENSORLG00015009342	srl	97	96.687	Oryzias_latipes_hsok
ENSHBUG00000007581	srl	97	73.904	ENSOMEG00000005682	SRL	53	74.179	Oryzias_melastigma
ENSHBUG00000007581	srl	100	95.436	ENSOMEG00000010006	srl	100	96.480	Oryzias_melastigma
ENSHBUG00000007581	srl	99	80.870	ENSOGAG00000029266	SRL	56	81.798	Otolemur_garnettii
ENSHBUG00000007581	srl	98	83.073	ENSOARG00000003074	SRL	57	82.213	Ovis_aries
ENSHBUG00000007581	srl	97	83.032	ENSPPAG00000024919	-	99	83.256	Pan_paniscus
ENSHBUG00000007581	srl	97	82.579	ENSPPRG00000010274	SRL	98	84.360	Panthera_pardus
ENSHBUG00000007581	srl	97	82.579	ENSPTIG00000015162	SRL	98	84.360	Panthera_tigris_altaica
ENSHBUG00000007581	srl	97	83.032	ENSPTRG00000007712	SRL	99	83.256	Pan_troglodytes
ENSHBUG00000007581	srl	97	83.032	ENSPANG00000013804	SRL	98	81.004	Papio_anubis
ENSHBUG00000007581	srl	100	90.309	ENSPKIG00000006405	srl	100	90.309	Paramormyrops_kingsleyae
ENSHBUG00000007581	srl	100	78.556	ENSPKIG00000024974	SRL	94	78.556	Paramormyrops_kingsleyae
ENSHBUG00000007581	srl	97	82.844	ENSPSIG00000008586	SRL	50	82.844	Pelodiscus_sinensis
ENSHBUG00000007581	srl	97	75.847	ENSPMGG00000023505	-	100	75.847	Periophthalmus_magnuspinnatus
ENSHBUG00000007581	srl	99	93.846	ENSPMGG00000021081	srl	98	93.846	Periophthalmus_magnuspinnatus
ENSHBUG00000007581	srl	98	82.889	ENSPEMG00000015842	Srl	98	81.720	Peromyscus_maniculatus_bairdii
ENSHBUG00000007581	srl	92	68.119	ENSPMAG00000004786	srl	99	68.650	Petromyzon_marinus
ENSHBUG00000007581	srl	98	83.036	ENSPCIG00000012128	SRL	99	82.927	Phascolarctos_cinereus
ENSHBUG00000007581	srl	100	95.031	ENSPFOG00000011408	srl	98	93.291	Poecilia_formosa
ENSHBUG00000007581	srl	98	77.009	ENSPLAG00000002932	SRL	100	76.837	Poecilia_latipinna
ENSHBUG00000007581	srl	98	95.759	ENSPLAG00000008017	srl	100	93.926	Poecilia_latipinna
ENSHBUG00000007581	srl	100	94.904	ENSPMEG00000006745	srl	100	93.926	Poecilia_mexicana
ENSHBUG00000007581	srl	98	75.488	ENSPMEG00000005890	SRL	61	74.573	Poecilia_mexicana
ENSHBUG00000007581	srl	98	77.728	ENSPREG00000000315	SRL	100	77.951	Poecilia_reticulata
ENSHBUG00000007581	srl	100	95.031	ENSPREG00000007751	srl	99	95.982	Poecilia_reticulata
ENSHBUG00000007581	srl	92	84.726	ENSPPYG00000007053	SRL	98	84.726	Pongo_abelii
ENSHBUG00000007581	srl	99	81.659	ENSPCAG00000003378	-	52	81.659	Procavia_capensis
ENSHBUG00000007581	srl	98	82.444	ENSPCOG00000023135	SRL	99	83.721	Propithecus_coquereli
ENSHBUG00000007581	srl	98	82.667	ENSPVAG00000006586	SRL	56	82.561	Pteropus_vampyrus
ENSHBUG00000007581	srl	100	99.793	ENSPNYG00000001200	srl	100	99.793	Pundamilia_nyererei
ENSHBUG00000007581	srl	99	74.624	ENSPNYG00000003423	SRL	58	74.624	Pundamilia_nyererei
ENSHBUG00000007581	srl	100	91.494	ENSPNAG00000023106	srl	100	91.494	Pygocentrus_nattereri
ENSHBUG00000007581	srl	97	76.417	ENSPNAG00000007361	-	91	76.417	Pygocentrus_nattereri
ENSHBUG00000007581	srl	98	83.333	ENSRNOG00000005269	Srl	50	83.333	Rattus_norvegicus
ENSHBUG00000007581	srl	97	83.032	ENSRBIG00000042358	SRL	51	81.579	Rhinopithecus_bieti
ENSHBUG00000007581	srl	97	83.032	ENSSBOG00000029273	SRL	98	81.075	Saimiri_boliviensis_boliviensis
ENSHBUG00000007581	srl	99	82.927	ENSSHAG00000011715	-	51	83.111	Sarcophilus_harrisii
ENSHBUG00000007581	srl	98	93.483	ENSSFOG00015009773	srl	100	91.322	Scleropages_formosus
ENSHBUG00000007581	srl	98	77.803	ENSSFOG00015021327	SRL	50	77.679	Scleropages_formosus
ENSHBUG00000007581	srl	100	95.966	ENSSMAG00000016274	srl	100	95.966	Scophthalmus_maximus
ENSHBUG00000007581	srl	97	75.165	ENSSMAG00000002232	SRL	50	75.165	Scophthalmus_maximus
ENSHBUG00000007581	srl	98	96.861	ENSSDUG00000010808	srl	98	96.861	Seriola_dumerili
ENSHBUG00000007581	srl	97	77.556	ENSSDUG00000009161	SRL	99	77.556	Seriola_dumerili
ENSHBUG00000007581	srl	97	77.293	ENSSLDG00000014601	SRL	100	77.851	Seriola_lalandi_dorsalis
ENSHBUG00000007581	srl	100	94.813	ENSSLDG00000022024	srl	100	96.273	Seriola_lalandi_dorsalis
ENSHBUG00000007581	srl	97	82.472	ENSSPUG00000016859	SRL	99	81.637	Sphenodon_punctatus
ENSHBUG00000007581	srl	97	78.685	ENSSPAG00000014254	SRL	98	78.685	Stegastes_partitus
ENSHBUG00000007581	srl	100	97.314	ENSSPAG00000019105	srl	100	97.314	Stegastes_partitus
ENSHBUG00000007581	srl	98	82.405	ENSSSCG00000007949	SRL	98	83.220	Sus_scrofa
ENSHBUG00000007581	srl	96	83.864	ENSTGUG00000003951	-	99	82.705	Taeniopygia_guttata
ENSHBUG00000007581	srl	79	86.464	ENSTGUG00000016121	-	100	86.464	Taeniopygia_guttata
ENSHBUG00000007581	srl	100	95.754	ENSTRUG00000006005	srl	100	95.754	Takifugu_rubripes
ENSHBUG00000007581	srl	92	78.282	ENSTRUG00000013310	SRL	55	78.282	Takifugu_rubripes
ENSHBUG00000007581	srl	98	96.214	ENSTNIG00000009739	srl	100	95.117	Tetraodon_nigroviridis
ENSHBUG00000007581	srl	99	80.963	ENSUAMG00000005701	SRL	57	80.963	Ursus_americanus
ENSHBUG00000007581	srl	99	80.963	ENSUMAG00000002574	SRL	56	81.498	Ursus_maritimus
ENSHBUG00000007581	srl	99	80.610	ENSVVUG00000016331	-	50	80.963	Vulpes_vulpes
ENSHBUG00000007581	srl	98	82.143	ENSXETG00000017313	srl	99	82.143	Xenopus_tropicalis
ENSHBUG00000007581	srl	98	78.125	ENSXCOG00000014584	SRL	99	78.125	Xiphophorus_couchianus
ENSHBUG00000007581	srl	92	95.962	ENSXCOG00000010424	srl	97	95.962	Xiphophorus_couchianus
ENSHBUG00000007581	srl	100	94.824	ENSXMAG00000004625	srl	95	94.824	Xiphophorus_maculatus
ENSHBUG00000007581	srl	99	75.431	ENSXMAG00000027598	SRL	64	75.214	Xiphophorus_maculatus