EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000007667 (Gene tree)
Gene ID: -
Gene Symbol: lsm12b
Alias: lsm12|wu:fe01f11|zgc:66039
Full Name: LSM12 homolog
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 9705 bases
Position: chrJH425326.1:1458488-1468192
Accession: 102308629
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000025590	AD	PF09793.9	2e-25	1	1
ENSHBUP00000025585	AD	PF09793.9	2.6e-25	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000005594	-	2051	-	ENSHBUP00000025585	225 (aa)	-	UPI000329AE9C
ENSHBUT00000005582	-	3943	XM_005913582	ENSHBUP00000025590	227 (aa)	XP_005913644	-

Gene Model

Click here to download ENSHBUG00000007667's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000007667's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000007667	lsm12b	74	85.629	ENSG00000161654	LSM12	85	85.629	Homo_sapiens
ENSHBUG00000007667	lsm12b	74	97.605	ENSAPOG00000007907	lsm12b	85	97.605	Acanthochromis_polyacanthus
ENSHBUG00000007667	lsm12b	74	83.529	ENSAMEG00000018321	LSM12	85	83.529	Ailuropoda_melanoleuca
ENSHBUG00000007667	lsm12b	74	99.401	ENSACIG00000008538	lsm12b	85	99.401	Amphilophus_citrinellus
ENSHBUG00000007667	lsm12b	74	98.204	ENSAOCG00000021847	lsm12b	75	98.204	Amphiprion_ocellaris
ENSHBUG00000007667	lsm12b	74	98.204	ENSAPEG00000002252	lsm12b	99	89.247	Amphiprion_percula
ENSHBUG00000007667	lsm12b	74	97.006	ENSATEG00000005705	lsm12b	85	97.006	Anabas_testudineus
ENSHBUG00000007667	lsm12b	74	83.832	ENSACAG00000004618	LSM12	85	83.832	Anolis_carolinensis
ENSHBUG00000007667	lsm12b	74	85.629	ENSANAG00000029011	LSM12	85	85.629	Aotus_nancymaae
ENSHBUG00000007667	lsm12b	74	100.000	ENSACLG00000026332	lsm12b	85	100.000	Astatotilapia_calliptera
ENSHBUG00000007667	lsm12b	74	85.030	ENSAMXG00000036117	lsm12a	78	85.030	Astyanax_mexicanus
ENSHBUG00000007667	lsm12b	74	92.814	ENSAMXG00000032952	lsm12b	85	92.814	Astyanax_mexicanus
ENSHBUG00000007667	lsm12b	74	85.629	ENSBTAG00000016252	LSM12	85	85.629	Bos_taurus
ENSHBUG00000007667	lsm12b	74	85.629	ENSCJAG00000048480	LSM12	85	85.629	Callithrix_jacchus
ENSHBUG00000007667	lsm12b	74	85.629	ENSCAFG00000014379	LSM12	78	85.629	Canis_familiaris
ENSHBUG00000007667	lsm12b	74	85.629	ENSCAFG00020012173	LSM12	85	85.629	Canis_lupus_dingo
ENSHBUG00000007667	lsm12b	74	85.629	ENSCHIG00000018175	LSM12	85	85.629	Capra_hircus
ENSHBUG00000007667	lsm12b	74	85.629	ENSTSYG00000036361	LSM12	85	85.629	Carlito_syrichta
ENSHBUG00000007667	lsm12b	73	80.723	ENSCAPG00000009647	LSM12	91	80.723	Cavia_aperea
ENSHBUG00000007667	lsm12b	74	85.030	ENSCPOG00000012860	LSM12	85	85.030	Cavia_porcellus
ENSHBUG00000007667	lsm12b	74	85.629	ENSCCAG00000032905	LSM12	85	85.629	Cebus_capucinus
ENSHBUG00000007667	lsm12b	74	85.629	ENSCATG00000030577	-	85	85.629	Cercocebus_atys
ENSHBUG00000007667	lsm12b	74	85.629	ENSCLAG00000015759	LSM12	85	85.629	Chinchilla_lanigera
ENSHBUG00000007667	lsm12b	74	85.629	ENSCSAG00000003486	LSM12	85	85.629	Chlorocebus_sabaeus
ENSHBUG00000007667	lsm12b	74	84.431	ENSCPBG00000027105	LSM12	85	84.431	Chrysemys_picta_bellii
ENSHBUG00000007667	lsm12b	74	85.629	ENSCANG00000043328	LSM12	85	85.629	Colobus_angolensis_palliatus
ENSHBUG00000007667	lsm12b	74	85.629	ENSCGRG00001002094	Lsm12	85	85.629	Cricetulus_griseus_chok1gshd
ENSHBUG00000007667	lsm12b	73	79.762	ENSCGRG00000004316	Lsm12	95	79.762	Cricetulus_griseus_crigri
ENSHBUG00000007667	lsm12b	74	97.605	ENSCSEG00000008434	lsm12b	85	97.605	Cynoglossus_semilaevis
ENSHBUG00000007667	lsm12b	74	95.808	ENSCVAG00000008755	lsm12b	85	95.808	Cyprinodon_variegatus
ENSHBUG00000007667	lsm12b	74	94.012	ENSDARG00000109510	lsm12b	85	94.012	Danio_rerio
ENSHBUG00000007667	lsm12b	79	82.778	ENSDARG00000028848	lsm12a	92	82.778	Danio_rerio
ENSHBUG00000007667	lsm12b	74	85.629	ENSDNOG00000002418	LSM12	78	85.629	Dasypus_novemcinctus
ENSHBUG00000007667	lsm12b	74	85.629	ENSDORG00000016381	Lsm12	85	85.629	Dipodomys_ordii
ENSHBUG00000007667	lsm12b	63	32.278	FBgn0036057	CG14164	83	32.278	Drosophila_melanogaster
ENSHBUG00000007667	lsm12b	70	34.568	FBgn0030364	Lsm12	74	34.568	Drosophila_melanogaster
ENSHBUG00000007667	lsm12b	68	74.675	ENSETEG00000011012	-	88	74.675	Echinops_telfairi
ENSHBUG00000007667	lsm12b	74	85.030	ENSETEG00000008374	LSM12	85	85.030	Echinops_telfairi
ENSHBUG00000007667	lsm12b	74	66.071	ENSEBUG00000016299	lsm12a	93	66.071	Eptatretus_burgeri
ENSHBUG00000007667	lsm12b	74	85.629	ENSEASG00005010155	LSM12	85	85.629	Equus_asinus_asinus
ENSHBUG00000007667	lsm12b	88	74.752	ENSECAG00000009071	LSM12	96	74.752	Equus_caballus
ENSHBUG00000007667	lsm12b	68	84.967	ENSEEUG00000002419	-	100	84.967	Erinaceus_europaeus
ENSHBUG00000007667	lsm12b	74	93.413	ENSELUG00000015538	lsm12b	85	88.024	Esox_lucius
ENSHBUG00000007667	lsm12b	74	91.617	ENSELUG00000000256	-	85	91.617	Esox_lucius
ENSHBUG00000007667	lsm12b	74	85.629	ENSFCAG00000037021	LSM12	85	85.629	Felis_catus
ENSHBUG00000007667	lsm12b	66	85.135	ENSFDAG00000008954	LSM12	87	85.135	Fukomys_damarensis
ENSHBUG00000007667	lsm12b	74	95.808	ENSFHEG00000019913	lsm12b	85	95.808	Fundulus_heteroclitus
ENSHBUG00000007667	lsm12b	68	97.403	ENSGMOG00000015449	lsm12b	97	97.403	Gadus_morhua
ENSHBUG00000007667	lsm12b	68	85.621	ENSGALG00000039803	LSM12	100	85.621	Gallus_gallus
ENSHBUG00000007667	lsm12b	74	95.808	ENSGAFG00000011829	lsm12b	85	95.808	Gambusia_affinis
ENSHBUG00000007667	lsm12b	68	98.052	ENSGACG00000003428	lsm12b	97	98.052	Gasterosteus_aculeatus
ENSHBUG00000007667	lsm12b	74	84.431	ENSGAGG00000021965	LSM12	85	84.431	Gopherus_agassizii
ENSHBUG00000007667	lsm12b	74	85.629	ENSGGOG00000010589	-	85	85.629	Gorilla_gorilla
ENSHBUG00000007667	lsm12b	74	85.629	ENSHGLG00000011411	LSM12	85	85.629	Heterocephalus_glaber_female
ENSHBUG00000007667	lsm12b	72	81.595	ENSHGLG00100000241	LSM12	87	81.595	Heterocephalus_glaber_male
ENSHBUG00000007667	lsm12b	74	93.413	ENSHCOG00000002094	lsm12b	85	93.413	Hippocampus_comes
ENSHBUG00000007667	lsm12b	74	94.012	ENSIPUG00000014800	lsm12	85	94.012	Ictalurus_punctatus
ENSHBUG00000007667	lsm12b	74	84.431	ENSIPUG00000008936	lsm12a	86	84.431	Ictalurus_punctatus
ENSHBUG00000007667	lsm12b	74	85.629	ENSSTOG00000007403	LSM12	85	85.629	Ictidomys_tridecemlineatus
ENSHBUG00000007667	lsm12b	69	73.077	ENSJJAG00000014652	-	93	73.077	Jaculus_jaculus
ENSHBUG00000007667	lsm12b	74	85.030	ENSJJAG00000004364	-	85	85.030	Jaculus_jaculus
ENSHBUG00000007667	lsm12b	70	75.776	ENSJJAG00000011793	-	84	75.776	Jaculus_jaculus
ENSHBUG00000007667	lsm12b	74	95.238	ENSKMAG00000007704	lsm12b	57	95.238	Kryptolebias_marmoratus
ENSHBUG00000007667	lsm12b	74	97.605	ENSLBEG00000027999	lsm12b	85	97.605	Labrus_bergylta
ENSHBUG00000007667	lsm12b	74	89.222	ENSLACG00000015981	LSM12	85	89.222	Latimeria_chalumnae
ENSHBUG00000007667	lsm12b	74	92.216	ENSLOCG00000013079	lsm12b	85	92.216	Lepisosteus_oculatus
ENSHBUG00000007667	lsm12b	74	85.629	ENSLAFG00000005202	LSM12	85	85.629	Loxodonta_africana
ENSHBUG00000007667	lsm12b	74	85.629	ENSMFAG00000031376	LSM12	85	85.629	Macaca_fascicularis
ENSHBUG00000007667	lsm12b	74	85.629	ENSMMUG00000006804	LSM12	85	85.629	Macaca_mulatta
ENSHBUG00000007667	lsm12b	74	85.629	ENSMNEG00000030594	-	85	85.629	Macaca_nemestrina
ENSHBUG00000007667	lsm12b	74	85.629	ENSMLEG00000039934	LSM12	85	85.629	Mandrillus_leucophaeus
ENSHBUG00000007667	lsm12b	74	97.605	ENSMAMG00000004279	lsm12b	85	97.605	Mastacembelus_armatus
ENSHBUG00000007667	lsm12b	74	100.000	ENSMZEG00005005754	lsm12b	85	100.000	Maylandia_zebra
ENSHBUG00000007667	lsm12b	74	85.629	ENSMICG00000037219	LSM12	85	85.629	Microcebus_murinus
ENSHBUG00000007667	lsm12b	74	72.455	ENSMOCG00000017015	-	73	72.455	Microtus_ochrogaster
ENSHBUG00000007667	lsm12b	74	85.629	ENSMOCG00000019878	-	85	85.629	Microtus_ochrogaster
ENSHBUG00000007667	lsm12b	74	97.605	ENSMMOG00000020848	lsm12b	85	97.605	Mola_mola
ENSHBUG00000007667	lsm12b	74	97.605	ENSMALG00000007578	lsm12b	85	97.605	Monopterus_albus
ENSHBUG00000007667	lsm12b	74	85.629	MGP_CAROLIEiJ_G0017241	Lsm12	85	85.629	Mus_caroli
ENSHBUG00000007667	lsm12b	74	85.629	ENSMUSG00000020922	Lsm12	85	85.629	Mus_musculus
ENSHBUG00000007667	lsm12b	74	77.717	MGP_PahariEiJ_G0018371	Lsm12	81	84.685	Mus_pahari
ENSHBUG00000007667	lsm12b	74	85.030	MGP_SPRETEiJ_G0018084	Lsm12	85	85.030	Mus_spretus
ENSHBUG00000007667	lsm12b	74	86.228	ENSMLUG00000006391	LSM12	85	86.228	Myotis_lucifugus
ENSHBUG00000007667	lsm12b	74	85.629	ENSNGAG00000001870	Lsm12	85	85.629	Nannospalax_galili
ENSHBUG00000007667	lsm12b	74	62.069	ENSNGAG00000015429	-	90	62.069	Nannospalax_galili
ENSHBUG00000007667	lsm12b	74	100.000	ENSNBRG00000006266	lsm12b	85	100.000	Neolamprologus_brichardi
ENSHBUG00000007667	lsm12b	85	76.684	ENSNLEG00000005580	-	85	85.629	Nomascus_leucogenys
ENSHBUG00000007667	lsm12b	73	84.337	ENSMEUG00000007501	-	100	84.337	Notamacropus_eugenii
ENSHBUG00000007667	lsm12b	74	85.629	ENSOPRG00000008552	LSM12	85	85.629	Ochotona_princeps
ENSHBUG00000007667	lsm12b	73	77.711	ENSODEG00000007886	-	62	77.711	Octodon_degus
ENSHBUG00000007667	lsm12b	73	85.455	ENSODEG00000017998	-	85	85.455	Octodon_degus
ENSHBUG00000007667	lsm12b	74	100.000	ENSONIG00000007933	lsm12b	85	100.000	Oreochromis_niloticus
ENSHBUG00000007667	lsm12b	74	80.240	ENSOCUG00000021254	-	86	80.240	Oryctolagus_cuniculus
ENSHBUG00000007667	lsm12b	74	80.838	ENSOCUG00000027889	-	86	80.838	Oryctolagus_cuniculus
ENSHBUG00000007667	lsm12b	74	83.529	ENSOCUG00000008566	-	85	83.529	Oryctolagus_cuniculus
ENSHBUG00000007667	lsm12b	74	79.042	ENSOCUG00000024823	-	86	79.042	Oryctolagus_cuniculus
ENSHBUG00000007667	lsm12b	74	97.605	ENSORLG00000011310	lsm12b	85	97.605	Oryzias_latipes
ENSHBUG00000007667	lsm12b	74	97.605	ENSORLG00020002060	lsm12b	78	97.605	Oryzias_latipes_hni
ENSHBUG00000007667	lsm12b	74	97.605	ENSORLG00015001647	lsm12b	78	97.605	Oryzias_latipes_hsok
ENSHBUG00000007667	lsm12b	74	97.605	ENSOMEG00000006184	lsm12b	78	97.605	Oryzias_melastigma
ENSHBUG00000007667	lsm12b	74	85.629	ENSOGAG00000010489	LSM12	85	85.629	Otolemur_garnettii
ENSHBUG00000007667	lsm12b	74	82.081	ENSOARG00000006589	LSM12	86	82.081	Ovis_aries
ENSHBUG00000007667	lsm12b	68	84.967	ENSPPAG00000034974	-	83	84.967	Pan_paniscus
ENSHBUG00000007667	lsm12b	74	85.629	ENSPPRG00000023420	LSM12	85	85.629	Panthera_pardus
ENSHBUG00000007667	lsm12b	50	85.185	ENSPTIG00000014850	-	79	85.185	Panthera_tigris_altaica
ENSHBUG00000007667	lsm12b	68	84.967	ENSPTIG00000012704	-	82	84.967	Panthera_tigris_altaica
ENSHBUG00000007667	lsm12b	74	85.629	ENSPTRG00000009261	LSM12	85	85.629	Pan_troglodytes
ENSHBUG00000007667	lsm12b	74	85.629	ENSPANG00000021315	-	85	85.629	Papio_anubis
ENSHBUG00000007667	lsm12b	74	85.629	ENSPKIG00000017932	-	85	85.629	Paramormyrops_kingsleyae
ENSHBUG00000007667	lsm12b	74	92.216	ENSPKIG00000021058	lsm12b	91	92.169	Paramormyrops_kingsleyae
ENSHBUG00000007667	lsm12b	74	97.006	ENSPMGG00000021344	lsm12b	85	97.006	Periophthalmus_magnuspinnatus
ENSHBUG00000007667	lsm12b	74	85.629	ENSPEMG00000012199	Lsm12	85	85.629	Peromyscus_maniculatus_bairdii
ENSHBUG00000007667	lsm12b	74	68.263	ENSPMAG00000005461	lsm12a	95	68.263	Petromyzon_marinus
ENSHBUG00000007667	lsm12b	74	84.431	ENSPCIG00000020244	LSM12	85	84.431	Phascolarctos_cinereus
ENSHBUG00000007667	lsm12b	74	94.611	ENSPFOG00000015930	lsm12b	85	94.611	Poecilia_formosa
ENSHBUG00000007667	lsm12b	74	94.611	ENSPLAG00000021089	lsm12b	85	94.611	Poecilia_latipinna
ENSHBUG00000007667	lsm12b	74	94.611	ENSPMEG00000012961	lsm12b	85	94.611	Poecilia_mexicana
ENSHBUG00000007667	lsm12b	68	96.753	ENSPREG00000010236	lsm12b	86	96.753	Poecilia_reticulata
ENSHBUG00000007667	lsm12b	74	85.629	ENSPPYG00000008344	LSM12	85	85.629	Pongo_abelii
ENSHBUG00000007667	lsm12b	70	84.906	ENSPCAG00000008790	LSM12	100	84.906	Procavia_capensis
ENSHBUG00000007667	lsm12b	74	85.629	ENSPCOG00000027951	LSM12	85	85.629	Propithecus_coquereli
ENSHBUG00000007667	lsm12b	74	86.228	ENSPVAG00000013706	LSM12	85	86.228	Pteropus_vampyrus
ENSHBUG00000007667	lsm12b	74	100.000	ENSPNYG00000003386	lsm12b	85	100.000	Pundamilia_nyererei
ENSHBUG00000007667	lsm12b	74	84.431	ENSPNAG00000018435	lsm12a	85	84.431	Pygocentrus_nattereri
ENSHBUG00000007667	lsm12b	74	93.413	ENSPNAG00000004186	lsm12b	85	93.413	Pygocentrus_nattereri
ENSHBUG00000007667	lsm12b	74	85.629	ENSRNOG00000020894	Lsm12	85	85.629	Rattus_norvegicus
ENSHBUG00000007667	lsm12b	74	85.629	ENSRBIG00000027910	LSM12	85	85.629	Rhinopithecus_bieti
ENSHBUG00000007667	lsm12b	77	83.333	ENSRROG00000045530	-	100	83.333	Rhinopithecus_roxellana
ENSHBUG00000007667	lsm12b	52	73.276	ENSRROG00000000537	-	80	73.276	Rhinopithecus_roxellana
ENSHBUG00000007667	lsm12b	52	32.061	YHR121W	-	68	32.061	Saccharomyces_cerevisiae
ENSHBUG00000007667	lsm12b	74	85.629	ENSSBOG00000025310	LSM12	85	85.629	Saimiri_boliviensis_boliviensis
ENSHBUG00000007667	lsm12b	69	84.615	ENSSHAG00000014914	LSM12	99	84.615	Sarcophilus_harrisii
ENSHBUG00000007667	lsm12b	74	92.814	ENSSFOG00015020392	lsm12a	85	92.814	Scleropages_formosus
ENSHBUG00000007667	lsm12b	74	95.210	ENSSFOG00015009612	lsm12	85	95.210	Scleropages_formosus
ENSHBUG00000007667	lsm12b	74	97.605	ENSSMAG00000008089	lsm12b	85	97.605	Scophthalmus_maximus
ENSHBUG00000007667	lsm12b	74	97.605	ENSSDUG00000012711	lsm12b	85	97.605	Seriola_dumerili
ENSHBUG00000007667	lsm12b	74	97.605	ENSSLDG00000007404	lsm12b	85	97.605	Seriola_lalandi_dorsalis
ENSHBUG00000007667	lsm12b	68	84.314	ENSSARG00000005537	LSM12	100	84.314	Sorex_araneus
ENSHBUG00000007667	lsm12b	74	84.431	ENSSPUG00000011984	LSM12	85	84.431	Sphenodon_punctatus
ENSHBUG00000007667	lsm12b	99	78.667	ENSSPAG00000017058	lsm12b	85	98.204	Stegastes_partitus
ENSHBUG00000007667	lsm12b	74	85.629	ENSSSCG00000032394	LSM12	85	85.629	Sus_scrofa
ENSHBUG00000007667	lsm12b	74	96.407	ENSTRUG00000007121	lsm12b	85	96.407	Takifugu_rubripes
ENSHBUG00000007667	lsm12b	74	96.407	ENSTNIG00000014436	lsm12b	85	96.407	Tetraodon_nigroviridis
ENSHBUG00000007667	lsm12b	74	85.629	ENSTBEG00000012523	-	85	85.629	Tupaia_belangeri
ENSHBUG00000007667	lsm12b	74	83.234	ENSTBEG00000012392	-	85	83.234	Tupaia_belangeri
ENSHBUG00000007667	lsm12b	74	85.629	ENSTTRG00000010433	LSM12	85	85.629	Tursiops_truncatus
ENSHBUG00000007667	lsm12b	74	85.629	ENSUAMG00000006313	LSM12	96	85.065	Ursus_americanus
ENSHBUG00000007667	lsm12b	68	85.065	ENSUMAG00000012987	LSM12	88	85.065	Ursus_maritimus
ENSHBUG00000007667	lsm12b	74	79.641	ENSVPAG00000011145	LSM12	85	79.641	Vicugna_pacos
ENSHBUG00000007667	lsm12b	74	85.629	ENSVVUG00000017581	LSM12	85	85.629	Vulpes_vulpes
ENSHBUG00000007667	lsm12b	65	61.644	ENSXETG00000003371	lsm12	72	61.644	Xenopus_tropicalis
ENSHBUG00000007667	lsm12b	74	95.808	ENSXCOG00000003994	lsm12b	85	95.808	Xiphophorus_couchianus
ENSHBUG00000007667	lsm12b	74	95.808	ENSXMAG00000020950	lsm12b	85	95.808	Xiphophorus_maculatus