EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000007920 (Gene tree)
Gene ID: 102302247
Gene Symbol: scaf4a
Alias: fa96d07|si:dkey-50p8.3|wu:fa96d07
Full Name: SR-related CTD associated factor 4
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 13061 bases
Position: chrJH425414.1:734057-747117
Accession: 102302247
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000025737	RRM_1	PF00076.22	5.5e-07	1	1
ENSHBUP00000006503	RRM_1	PF00076.22	5.8e-07	1	1
ENSHBUP00000006508	RRM_1	PF00076.22	5.8e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000005193	-	6562	-	ENSHBUP00000006503	1103 (aa)	-	-
ENSHBUT00000005210	-	6469	XM_005928040	ENSHBUP00000025737	1144 (aa)	XP_005928102	UPI0003BD8A26
ENSHBUT00000005184	-	6663	-	ENSHBUP00000006508	1103 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000007920's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000007920's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000007920	scaf4a	59	49.856	ENSAPOG00000019615	scaf4b	58	60.891	Acanthochromis_polyacanthus
ENSHBUG00000007920	scaf4a	85	82.907	ENSAPOG00000002946	scaf4a	100	81.315	Acanthochromis_polyacanthus
ENSHBUG00000007920	scaf4a	100	81.039	ENSAOCG00000000615	scaf4a	100	82.424	Amphiprion_ocellaris
ENSHBUG00000007920	scaf4a	59	50.145	ENSAOCG00000010433	scaf4b	58	61.386	Amphiprion_ocellaris
ENSHBUG00000007920	scaf4a	100	80.606	ENSAPEG00000021229	scaf4a	100	81.818	Amphiprion_percula
ENSHBUG00000007920	scaf4a	59	50.434	ENSAPEG00000010913	scaf4b	58	61.386	Amphiprion_percula
ENSHBUG00000007920	scaf4a	91	50.866	ENSAMXG00000008585	scaf4a	100	51.744	Astyanax_mexicanus
ENSHBUG00000007920	scaf4a	53	60.247	ENSCAFG00020026019	SCAF4	77	64.314	Canis_lupus_dingo
ENSHBUG00000007920	scaf4a	54	58.850	ENSCPOG00000012443	SCAF4	51	42.581	Cavia_porcellus
ENSHBUG00000007920	scaf4a	100	69.565	ENSCSEG00000019549	scaf4a	99	69.139	Cynoglossus_semilaevis
ENSHBUG00000007920	scaf4a	78	83.854	ENSELUG00000009909	scaf4a	89	84.817	Esox_lucius
ENSHBUG00000007920	scaf4a	66	76.933	ENSFHEG00000017866	scaf4a	61	79.463	Fundulus_heteroclitus
ENSHBUG00000007920	scaf4a	64	81.486	ENSGAFG00000019460	scaf4a	82	81.486	Gambusia_affinis
ENSHBUG00000007920	scaf4a	74	73.629	ENSGACG00000020580	scaf4a	84	73.774	Gasterosteus_aculeatus
ENSHBUG00000007920	scaf4a	56	89.706	ENSHCOG00000006849	scaf4a	54	89.630	Hippocampus_comes
ENSHBUG00000007920	scaf4a	82	59.420	ENSIPUG00000011285	scaf4	99	50.712	Ictalurus_punctatus
ENSHBUG00000007920	scaf4a	60	58.759	ENSKMAG00000005742	scaf4b	58	61.386	Kryptolebias_marmoratus
ENSHBUG00000007920	scaf4a	99	71.928	ENSLBEG00000014675	scaf4a	100	74.912	Labrus_bergylta
ENSHBUG00000007920	scaf4a	84	48.649	ENSLACG00000013913	SCAF4	75	49.330	Latimeria_chalumnae
ENSHBUG00000007920	scaf4a	52	49.664	ENSLOCG00000009162	scaf4a	86	57.261	Lepisosteus_oculatus
ENSHBUG00000007920	scaf4a	77	78.522	ENSMAMG00000013223	scaf4a	100	75.982	Mastacembelus_armatus
ENSHBUG00000007920	scaf4a	99	96.941	ENSMZEG00005024349	scaf4a	100	96.941	Maylandia_zebra
ENSHBUG00000007920	scaf4a	77	83.391	ENSMALG00000013825	scaf4a	54	83.391	Monopterus_albus
ENSHBUG00000007920	scaf4a	100	97.654	ENSONIG00000004687	scaf4a	100	97.654	Oreochromis_niloticus
ENSHBUG00000007920	scaf4a	100	69.218	ENSORLG00000004384	scaf4a	100	69.631	Oryzias_latipes
ENSHBUG00000007920	scaf4a	100	67.225	ENSORLG00020011857	scaf4a	100	68.540	Oryzias_latipes_hni
ENSHBUG00000007920	scaf4a	100	69.890	ENSORLG00015017880	scaf4a	100	71.041	Oryzias_latipes_hsok
ENSHBUG00000007920	scaf4a	99	71.851	ENSOMEG00000014482	scaf4a	99	71.453	Oryzias_melastigma
ENSHBUG00000007920	scaf4a	60	65.574	ENSPKIG00000022408	scaf4a	99	65.984	Paramormyrops_kingsleyae
ENSHBUG00000007920	scaf4a	93	70.289	ENSPFOG00000017156	scaf4a	76	79.642	Poecilia_formosa
ENSHBUG00000007920	scaf4a	66	79.974	ENSPLAG00000001972	scaf4a	91	82.027	Poecilia_latipinna
ENSHBUG00000007920	scaf4a	59	57.455	ENSPMEG00000006666	-	57	60.500	Poecilia_mexicana
ENSHBUG00000007920	scaf4a	71	57.176	ENSPNAG00000016892	scaf4a	99	53.568	Pygocentrus_nattereri
ENSHBUG00000007920	scaf4a	92	45.078	ENSSFOG00015006338	scaf4a	83	52.996	Scleropages_formosus
ENSHBUG00000007920	scaf4a	99	72.148	ENSSMAG00000017901	scaf4a	99	74.561	Scophthalmus_maximus
ENSHBUG00000007920	scaf4a	100	81.191	ENSSDUG00000012918	scaf4a	100	82.571	Seriola_dumerili
ENSHBUG00000007920	scaf4a	100	81.191	ENSSLDG00000021671	scaf4a	100	82.485	Seriola_lalandi_dorsalis
ENSHBUG00000007920	scaf4a	62	45.033	ENSTRUG00000009536	-	76	52.174	Takifugu_rubripes
ENSHBUG00000007920	scaf4a	86	55.612	ENSXETG00000007351	scaf4	72	55.130	Xenopus_tropicalis