EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000008431 (Gene tree)
Gene ID: 102292713
Gene Symbol: cmss1
Alias: zgc:101814
Full Name: cms1 ribosomal small subunit homolog
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 30807 bases
Position: chrJH425501.1:321398-352204
Accession: 102292713
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000026035	CMS1	PF14617.6	5e-33	1	1
ENSHBUP00000026040	CMS1	PF14617.6	8e-33	1	1
ENSHBUP00000026035	DEAD	PF00270.29	8.5e-08	1	1
ENSHBUP00000026040	DEAD	PF00270.29	9.6e-08	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000004418	-	1167	XM_005935079	ENSHBUP00000026040	290 (aa)	XP_005935141	UPI0003BD1505
ENSHBUT00000004428	-	1907	-	ENSHBUP00000026035	283 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000008431's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000008431's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000008431	cmss1	100	49.485	ENSG00000184220	CMSS1	98	58.750	Homo_sapiens
ENSHBUG00000008431	cmss1	90	73.462	ENSAPOG00000010604	cmss1	96	73.462	Acanthochromis_polyacanthus
ENSHBUG00000008431	cmss1	71	61.084	ENSAMEG00000004092	CMSS1	78	61.084	Ailuropoda_melanoleuca
ENSHBUG00000008431	cmss1	92	81.298	ENSACIG00000021854	cmss1	98	81.923	Amphilophus_citrinellus
ENSHBUG00000008431	cmss1	100	80.345	ENSAOCG00000013361	cmss1	100	79.655	Amphiprion_ocellaris
ENSHBUG00000008431	cmss1	100	74.138	ENSAPEG00000005829	cmss1	100	78.351	Amphiprion_percula
ENSHBUG00000008431	cmss1	100	74.227	ENSATEG00000008209	cmss1	100	74.744	Anabas_testudineus
ENSHBUG00000008431	cmss1	71	63.366	ENSAPLG00000010542	CMSS1	88	63.366	Anas_platyrhynchos
ENSHBUG00000008431	cmss1	97	54.348	ENSACAG00000011065	CMSS1	74	63.861	Anolis_carolinensis
ENSHBUG00000008431	cmss1	100	49.655	ENSANAG00000023565	CMSS1	100	47.619	Aotus_nancymaae
ENSHBUG00000008431	cmss1	100	98.969	ENSACLG00000027294	cmss1	100	98.969	Astatotilapia_calliptera
ENSHBUG00000008431	cmss1	100	57.483	ENSAMXG00000002046	cmss1	100	59.524	Astyanax_mexicanus
ENSHBUG00000008431	cmss1	100	49.164	ENSBTAG00000013663	CMSS1	100	48.505	Bos_taurus
ENSHBUG00000008431	cmss1	100	51.034	ENSCJAG00000000610	CMSS1	100	49.338	Callithrix_jacchus
ENSHBUG00000008431	cmss1	85	56.017	ENSCAFG00000009230	CMSS1	73	61.881	Canis_familiaris
ENSHBUG00000008431	cmss1	67	62.963	ENSCAFG00020024156	-	59	62.963	Canis_lupus_dingo
ENSHBUG00000008431	cmss1	85	56.017	ENSCAFG00020009464	-	74	61.881	Canis_lupus_dingo
ENSHBUG00000008431	cmss1	85	54.772	ENSCHIG00000013003	CMSS1	73	60.396	Capra_hircus
ENSHBUG00000008431	cmss1	71	61.881	ENSTSYG00000009266	CMSS1	78	61.881	Carlito_syrichta
ENSHBUG00000008431	cmss1	72	49.761	ENSCAPG00000013584	CMSS1	87	53.763	Cavia_aperea
ENSHBUG00000008431	cmss1	100	52.759	ENSCPOG00000014680	CMSS1	100	49.488	Cavia_porcellus
ENSHBUG00000008431	cmss1	100	51.379	ENSCCAG00000034685	CMSS1	100	48.980	Cebus_capucinus
ENSHBUG00000008431	cmss1	100	49.835	ENSCATG00000031980	CMSS1	100	49.175	Cercocebus_atys
ENSHBUG00000008431	cmss1	71	60.500	ENSCLAG00000011241	CMSS1	87	60.891	Chinchilla_lanigera
ENSHBUG00000008431	cmss1	71	62.376	ENSCSAG00000006024	CMSS1	82	62.376	Chlorocebus_sabaeus
ENSHBUG00000008431	cmss1	100	38.276	ENSCHOG00000012098	CMSS1	100	36.552	Choloepus_hoffmanni
ENSHBUG00000008431	cmss1	66	44.737	ENSCING00000014848	-	99	44.920	Ciona_intestinalis
ENSHBUG00000008431	cmss1	100	49.835	ENSCANG00000031337	CMSS1	100	49.175	Colobus_angolensis_palliatus
ENSHBUG00000008431	cmss1	100	48.966	ENSCGRG00001014305	Cmss1	100	48.276	Cricetulus_griseus_chok1gshd
ENSHBUG00000008431	cmss1	71	59.901	ENSCGRG00000006722	Cmss1	79	59.901	Cricetulus_griseus_crigri
ENSHBUG00000008431	cmss1	100	68.350	ENSCSEG00000004958	cmss1	100	69.024	Cynoglossus_semilaevis
ENSHBUG00000008431	cmss1	100	73.630	ENSCVAG00000005039	cmss1	100	72.603	Cyprinodon_variegatus
ENSHBUG00000008431	cmss1	100	60.204	ENSDARG00000112579	cmss1	100	58.586	Danio_rerio
ENSHBUG00000008431	cmss1	71	60.891	ENSDNOG00000040418	CMSS1	73	60.891	Dasypus_novemcinctus
ENSHBUG00000008431	cmss1	100	51.034	ENSDORG00000010461	Cmss1	100	49.169	Dipodomys_ordii
ENSHBUG00000008431	cmss1	71	60.000	ENSEASG00005010966	CMSS1	92	60.396	Equus_asinus_asinus
ENSHBUG00000008431	cmss1	98	50.000	ENSECAG00000015662	CMSS1	89	59.901	Equus_caballus
ENSHBUG00000008431	cmss1	71	44.000	ENSEEUG00000007624	-	73	44.554	Erinaceus_europaeus
ENSHBUG00000008431	cmss1	100	60.797	ENSELUG00000019459	cmss1	100	60.797	Esox_lucius
ENSHBUG00000008431	cmss1	100	51.034	ENSFCAG00000044577	CMSS1	100	49.829	Felis_catus
ENSHBUG00000008431	cmss1	71	62.376	ENSFALG00000005816	CMSS1	85	62.376	Ficedula_albicollis
ENSHBUG00000008431	cmss1	71	61.881	ENSFDAG00000012577	CMSS1	89	61.881	Fukomys_damarensis
ENSHBUG00000008431	cmss1	82	78.448	ENSFHEG00000012008	cmss1	95	78.017	Fundulus_heteroclitus
ENSHBUG00000008431	cmss1	99	66.551	ENSGMOG00000016729	cmss1	100	67.247	Gadus_morhua
ENSHBUG00000008431	cmss1	71	64.356	ENSGALG00000015267	CMSS1	77	64.356	Gallus_gallus
ENSHBUG00000008431	cmss1	94	76.015	ENSGAFG00000021217	cmss1	99	75.746	Gambusia_affinis
ENSHBUG00000008431	cmss1	99	72.125	ENSGACG00000002798	cmss1	100	71.080	Gasterosteus_aculeatus
ENSHBUG00000008431	cmss1	86	59.504	ENSGAGG00000019861	CMSS1	79	63.861	Gopherus_agassizii
ENSHBUG00000008431	cmss1	71	61.881	ENSGGOG00000014125	CMSS1	77	61.881	Gorilla_gorilla
ENSHBUG00000008431	cmss1	71	60.500	ENSHGLG00000019481	CMSS1	82	60.891	Heterocephalus_glaber_female
ENSHBUG00000008431	cmss1	71	60.500	ENSHGLG00100010314	CMSS1	81	60.891	Heterocephalus_glaber_male
ENSHBUG00000008431	cmss1	100	68.814	ENSHCOG00000003222	cmss1	100	69.153	Hippocampus_comes
ENSHBUG00000008431	cmss1	100	61.644	ENSIPUG00000011591	cmss1	100	60.751	Ictalurus_punctatus
ENSHBUG00000008431	cmss1	100	50.847	ENSSTOG00000019366	CMSS1	100	48.993	Ictidomys_tridecemlineatus
ENSHBUG00000008431	cmss1	100	51.877	ENSJJAG00000014894	Cmss1	90	62.376	Jaculus_jaculus
ENSHBUG00000008431	cmss1	94	67.041	ENSKMAG00000002390	cmss1	99	65.530	Kryptolebias_marmoratus
ENSHBUG00000008431	cmss1	72	77.941	ENSLBEG00000006298	cmss1	98	66.160	Labrus_bergylta
ENSHBUG00000008431	cmss1	71	63.861	ENSLACG00000009293	CMSS1	88	63.861	Latimeria_chalumnae
ENSHBUG00000008431	cmss1	100	53.448	ENSLOCG00000009391	cmss1	100	53.103	Lepisosteus_oculatus
ENSHBUG00000008431	cmss1	71	62.500	ENSLAFG00000017509	CMSS1	89	62.871	Loxodonta_africana
ENSHBUG00000008431	cmss1	100	49.505	ENSMFAG00000045006	CMSS1	100	48.845	Macaca_fascicularis
ENSHBUG00000008431	cmss1	100	49.175	ENSMMUG00000002939	CMSS1	100	48.515	Macaca_mulatta
ENSHBUG00000008431	cmss1	100	49.505	ENSMNEG00000031315	CMSS1	100	48.845	Macaca_nemestrina
ENSHBUG00000008431	cmss1	100	49.505	ENSMLEG00000033660	CMSS1	100	48.845	Mandrillus_leucophaeus
ENSHBUG00000008431	cmss1	100	77.663	ENSMAMG00000017176	cmss1	100	78.351	Mastacembelus_armatus
ENSHBUG00000008431	cmss1	100	98.969	ENSMZEG00005021886	cmss1	100	98.969	Maylandia_zebra
ENSHBUG00000008431	cmss1	71	64.356	ENSMGAG00000014360	CMSS1	89	64.356	Meleagris_gallopavo
ENSHBUG00000008431	cmss1	100	37.931	ENSMAUG00000020609	Cmss1	100	35.517	Mesocricetus_auratus
ENSHBUG00000008431	cmss1	100	52.414	ENSMICG00000048977	CMSS1	100	52.414	Microcebus_murinus
ENSHBUG00000008431	cmss1	100	50.508	ENSMOCG00000021937	Cmss1	100	49.658	Microtus_ochrogaster
ENSHBUG00000008431	cmss1	81	74.359	ENSMMOG00000019794	cmss1	97	68.898	Mola_mola
ENSHBUG00000008431	cmss1	84	54.365	ENSMODG00000002275	CMSS1	76	61.881	Monodelphis_domestica
ENSHBUG00000008431	cmss1	100	78.425	ENSMALG00000004250	cmss1	100	77.320	Monopterus_albus
ENSHBUG00000008431	cmss1	100	51.379	MGP_CAROLIEiJ_G0020824	Cmss1	100	51.379	Mus_caroli
ENSHBUG00000008431	cmss1	100	50.690	ENSMUSG00000022748	Cmss1	100	50.690	Mus_musculus
ENSHBUG00000008431	cmss1	100	52.055	MGP_PahariEiJ_G0016524	Cmss1	100	50.000	Mus_pahari
ENSHBUG00000008431	cmss1	100	51.712	MGP_SPRETEiJ_G0021724	Cmss1	100	50.000	Mus_spretus
ENSHBUG00000008431	cmss1	88	54.400	ENSMPUG00000011324	CMSS1	78	62.189	Mustela_putorius_furo
ENSHBUG00000008431	cmss1	71	62.376	ENSMLUG00000001131	CMSS1	78	62.745	Myotis_lucifugus
ENSHBUG00000008431	cmss1	100	51.379	ENSNGAG00000020316	Cmss1	100	49.829	Nannospalax_galili
ENSHBUG00000008431	cmss1	100	98.282	ENSNBRG00000003095	cmss1	100	98.282	Neolamprologus_brichardi
ENSHBUG00000008431	cmss1	100	50.345	ENSNLEG00000034172	CMSS1	100	49.505	Nomascus_leucogenys
ENSHBUG00000008431	cmss1	78	50.455	ENSMEUG00000014505	CMSS1	89	52.475	Notamacropus_eugenii
ENSHBUG00000008431	cmss1	100	51.195	ENSOPRG00000002986	CMSS1	100	50.000	Ochotona_princeps
ENSHBUG00000008431	cmss1	100	48.276	ENSODEG00000003558	-	100	47.931	Octodon_degus
ENSHBUG00000008431	cmss1	100	42.414	ENSODEG00000009446	-	100	42.759	Octodon_degus
ENSHBUG00000008431	cmss1	100	51.379	ENSODEG00000005226	-	100	50.685	Octodon_degus
ENSHBUG00000008431	cmss1	100	45.172	ENSODEG00000001853	-	100	44.178	Octodon_degus
ENSHBUG00000008431	cmss1	92	96.935	ENSONIG00000006678	cmss1	100	96.935	Oreochromis_niloticus
ENSHBUG00000008431	cmss1	80	59.031	ENSOANG00000007529	CMSS1	97	59.031	Ornithorhynchus_anatinus
ENSHBUG00000008431	cmss1	71	61.386	ENSOCUG00000025366	CMSS1	73	61.386	Oryctolagus_cuniculus
ENSHBUG00000008431	cmss1	100	71.379	ENSORLG00000020340	cmss1	100	72.069	Oryzias_latipes
ENSHBUG00000008431	cmss1	92	63.846	ENSORLG00020012235	cmss1	99	62.357	Oryzias_latipes_hni
ENSHBUG00000008431	cmss1	93	64.045	ENSORLG00015015551	cmss1	100	64.045	Oryzias_latipes_hsok
ENSHBUG00000008431	cmss1	100	72.852	ENSOMEG00000012555	cmss1	100	72.509	Oryzias_melastigma
ENSHBUG00000008431	cmss1	80	57.269	ENSOGAG00000002045	CMSS1	89	61.386	Otolemur_garnettii
ENSHBUG00000008431	cmss1	83	54.545	ENSOARG00000017899	CMSS1	70	60.099	Ovis_aries
ENSHBUG00000008431	cmss1	71	61.881	ENSPPAG00000038515	CMSS1	74	61.881	Pan_paniscus
ENSHBUG00000008431	cmss1	100	50.690	ENSPPRG00000016767	CMSS1	100	49.829	Panthera_pardus
ENSHBUG00000008431	cmss1	100	50.000	ENSPTIG00000018274	CMSS1	100	49.169	Panthera_tigris_altaica
ENSHBUG00000008431	cmss1	100	50.000	ENSPTRG00000015157	CMSS1	100	48.980	Pan_troglodytes
ENSHBUG00000008431	cmss1	71	62.376	ENSPANG00000019980	CMSS1	92	57.826	Papio_anubis
ENSHBUG00000008431	cmss1	99	58.803	ENSPKIG00000012609	cmss1	97	59.696	Paramormyrops_kingsleyae
ENSHBUG00000008431	cmss1	71	65.347	ENSPSIG00000003849	CMSS1	88	65.347	Pelodiscus_sinensis
ENSHBUG00000008431	cmss1	72	77.941	ENSPMGG00000010286	cmss1	88	77.941	Periophthalmus_magnuspinnatus
ENSHBUG00000008431	cmss1	100	50.345	ENSPEMG00000016384	Cmss1	100	50.345	Peromyscus_maniculatus_bairdii
ENSHBUG00000008431	cmss1	72	50.000	ENSPMAG00000001146	cmss1	99	50.246	Petromyzon_marinus
ENSHBUG00000008431	cmss1	99	51.418	ENSPCIG00000015656	CMSS1	77	61.386	Phascolarctos_cinereus
ENSHBUG00000008431	cmss1	100	77.055	ENSPFOG00000016849	cmss1	100	76.370	Poecilia_formosa
ENSHBUG00000008431	cmss1	100	76.712	ENSPLAG00000008323	cmss1	100	76.027	Poecilia_latipinna
ENSHBUG00000008431	cmss1	100	77.055	ENSPMEG00000021020	cmss1	100	75.685	Poecilia_mexicana
ENSHBUG00000008431	cmss1	92	79.693	ENSPREG00000007618	cmss1	96	76.241	Poecilia_reticulata
ENSHBUG00000008431	cmss1	100	49.828	ENSPPYG00000013606	CMSS1	100	49.175	Pongo_abelii
ENSHBUG00000008431	cmss1	100	52.759	ENSPCOG00000020035	CMSS1	100	52.759	Propithecus_coquereli
ENSHBUG00000008431	cmss1	100	43.793	ENSPVAG00000017031	CMSS1	100	42.525	Pteropus_vampyrus
ENSHBUG00000008431	cmss1	91	98.491	ENSPNYG00000013428	cmss1	97	98.491	Pundamilia_nyererei
ENSHBUG00000008431	cmss1	100	60.544	ENSPNAG00000007912	cmss1	100	60.204	Pygocentrus_nattereri
ENSHBUG00000008431	cmss1	71	61.881	ENSRNOG00000027888	Cmss1	79	61.881	Rattus_norvegicus
ENSHBUG00000008431	cmss1	100	49.655	ENSRBIG00000037931	CMSS1	100	48.986	Rhinopithecus_bieti
ENSHBUG00000008431	cmss1	100	49.655	ENSRROG00000042910	CMSS1	100	48.986	Rhinopithecus_roxellana
ENSHBUG00000008431	cmss1	85	54.772	ENSSBOG00000030980	CMSS1	77	61.386	Saimiri_boliviensis_boliviensis
ENSHBUG00000008431	cmss1	71	61.881	ENSSHAG00000009321	CMSS1	80	61.881	Sarcophilus_harrisii
ENSHBUG00000008431	cmss1	100	58.958	ENSSFOG00015001509	cmss1	100	62.162	Scleropages_formosus
ENSHBUG00000008431	cmss1	100	74.570	ENSSMAG00000001653	cmss1	100	74.403	Scophthalmus_maximus
ENSHBUG00000008431	cmss1	100	81.164	ENSSDUG00000007719	cmss1	100	79.110	Seriola_dumerili
ENSHBUG00000008431	cmss1	98	76.224	ENSSLDG00000012300	cmss1	96	75.524	Seriola_lalandi_dorsalis
ENSHBUG00000008431	cmss1	100	44.138	ENSSARG00000003584	CMSS1	100	42.333	Sorex_araneus
ENSHBUG00000008431	cmss1	71	60.891	ENSSPUG00000003865	CMSS1	89	60.891	Sphenodon_punctatus
ENSHBUG00000008431	cmss1	98	75.899	ENSSPAG00000019182	cmss1	83	75.540	Stegastes_partitus
ENSHBUG00000008431	cmss1	100	51.379	ENSSSCG00000011970	CMSS1	100	49.502	Sus_scrofa
ENSHBUG00000008431	cmss1	71	62.871	ENSTGUG00000013635	CMSS1	88	62.871	Taeniopygia_guttata
ENSHBUG00000008431	cmss1	100	69.863	ENSTRUG00000015265	cmss1	100	65.772	Takifugu_rubripes
ENSHBUG00000008431	cmss1	72	72.414	ENSTNIG00000002880	cmss1	89	63.498	Tetraodon_nigroviridis
ENSHBUG00000008431	cmss1	71	43.069	ENSTBEG00000016722	CMSS1	72	43.069	Tupaia_belangeri
ENSHBUG00000008431	cmss1	100	50.345	ENSTTRG00000001562	CMSS1	100	48.805	Tursiops_truncatus
ENSHBUG00000008431	cmss1	71	61.881	ENSUAMG00000024209	CMSS1	91	61.881	Ursus_americanus
ENSHBUG00000008431	cmss1	71	61.386	ENSUMAG00000001983	CMSS1	78	61.386	Ursus_maritimus
ENSHBUG00000008431	cmss1	57	60.000	ENSVPAG00000000263	CMSS1	57	60.000	Vicugna_pacos
ENSHBUG00000008431	cmss1	86	54.508	ENSVVUG00000007776	-	80	60.891	Vulpes_vulpes
ENSHBUG00000008431	cmss1	85	56.432	ENSVVUG00000021647	-	82	61.881	Vulpes_vulpes
ENSHBUG00000008431	cmss1	100	54.828	ENSXETG00000011858	cmss1	100	50.690	Xenopus_tropicalis
ENSHBUG00000008431	cmss1	97	75.540	ENSXCOG00000018724	cmss1	96	73.944	Xiphophorus_couchianus
ENSHBUG00000008431	cmss1	94	76.208	ENSXMAG00000011243	cmss1	99	76.030	Xiphophorus_maculatus