EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000008654 (Gene tree)
Gene ID: 102301611
Gene Symbol: smg5
Alias: zgc:113841
Full Name: SMG5%2C nonsense mediated mRNA decay factor
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 21048 bases
Position: chrJH425379.1:1181283-1202330
Accession: 102301611
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000026110	EST1	PF10374.9	3.8e-24	1	1
ENSHBUP00000007098	EST1	PF10374.9	4.3e-24	1	1
ENSHBUP00000007098	EST1_DNA_bind	PF10373.9	9.1e-41	1	1
ENSHBUP00000026110	EST1_DNA_bind	PF10373.9	1e-40	1	1
ENSHBUP00000026110	PIN_4	PF13638.6	3.6e-07	1	1
ENSHBUP00000007098	PIN_4	PF13638.6	4e-07	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000004201	-	4001	XM_005923692	ENSHBUP00000007098	1125 (aa)	XP_005923754	UPI0003BD5A26
ENSHBUT00000004234	-	3087	-	ENSHBUP00000026110	1028 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000008654's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000008654's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000008654	smg5	99	65.271	ENSG00000198952	SMG5	99	64.306	Homo_sapiens
ENSHBUG00000008654	smg5	100	91.770	ENSAPOG00000019690	smg5	100	91.424	Acanthochromis_polyacanthus
ENSHBUG00000008654	smg5	98	62.840	ENSAMEG00000014458	SMG5	100	62.963	Ailuropoda_melanoleuca
ENSHBUG00000008654	smg5	100	91.954	ENSACIG00000001353	smg5	100	92.560	Amphilophus_citrinellus
ENSHBUG00000008654	smg5	100	92.014	ENSAOCG00000019483	smg5	100	91.837	Amphiprion_ocellaris
ENSHBUG00000008654	smg5	100	91.748	ENSAPEG00000022949	smg5	100	91.837	Amphiprion_percula
ENSHBUG00000008654	smg5	100	90.160	ENSATEG00000005348	smg5	100	88.909	Anabas_testudineus
ENSHBUG00000008654	smg5	98	65.714	ENSAPLG00000010263	SMG5	100	65.255	Anas_platyrhynchos
ENSHBUG00000008654	smg5	99	65.399	ENSANAG00000032899	SMG5	99	64.706	Aotus_nancymaae
ENSHBUG00000008654	smg5	100	99.467	ENSACLG00000009311	smg5	100	99.467	Astatotilapia_calliptera
ENSHBUG00000008654	smg5	100	79.115	ENSAMXG00000024616	smg5	100	78.673	Astyanax_mexicanus
ENSHBUG00000008654	smg5	99	39.670	ENSBTAG00000021747	-	92	49.515	Bos_taurus
ENSHBUG00000008654	smg5	99	66.000	ENSBTAG00000009435	SMG5	99	64.947	Bos_taurus
ENSHBUG00000008654	smg5	99	65.271	ENSCJAG00000005684	SMG5	99	64.491	Callithrix_jacchus
ENSHBUG00000008654	smg5	99	64.951	ENSCAFG00000016839	SMG5	99	64.603	Canis_familiaris
ENSHBUG00000008654	smg5	99	64.951	ENSCAFG00020006061	SMG5	99	64.603	Canis_lupus_dingo
ENSHBUG00000008654	smg5	99	39.746	ENSCHIG00000006323	-	92	50.000	Capra_hircus
ENSHBUG00000008654	smg5	99	66.318	ENSCHIG00000007709	SMG5	99	64.947	Capra_hircus
ENSHBUG00000008654	smg5	99	66.097	ENSTSYG00000004099	SMG5	99	64.723	Carlito_syrichta
ENSHBUG00000008654	smg5	94	49.147	ENSCAPG00000003631	SMG5	100	49.899	Cavia_aperea
ENSHBUG00000008654	smg5	99	64.577	ENSCPOG00000015696	SMG5	99	64.756	Cavia_porcellus
ENSHBUG00000008654	smg5	99	64.873	ENSCCAG00000027409	SMG5	99	64.602	Cebus_capucinus
ENSHBUG00000008654	smg5	99	65.366	ENSCATG00000030539	SMG5	99	64.211	Cercocebus_atys
ENSHBUG00000008654	smg5	99	64.482	ENSCLAG00000003983	SMG5	99	64.470	Chinchilla_lanigera
ENSHBUG00000008654	smg5	99	65.366	ENSCSAG00000002120	SMG5	99	64.211	Chlorocebus_sabaeus
ENSHBUG00000008654	smg5	53	75.812	ENSCHOG00000008741	-	56	75.812	Choloepus_hoffmanni
ENSHBUG00000008654	smg5	94	66.365	ENSCPBG00000025848	SMG5	100	65.566	Chrysemys_picta_bellii
ENSHBUG00000008654	smg5	75	37.811	ENSCING00000008706	-	89	37.811	Ciona_intestinalis
ENSHBUG00000008654	smg5	99	62.903	ENSCANG00000029208	SMG5	99	61.737	Colobus_angolensis_palliatus
ENSHBUG00000008654	smg5	99	65.484	ENSCGRG00001006336	Smg5	99	65.125	Cricetulus_griseus_chok1gshd
ENSHBUG00000008654	smg5	98	65.366	ENSCGRG00000005111	Smg5	100	65.456	Cricetulus_griseus_crigri
ENSHBUG00000008654	smg5	100	85.714	ENSCSEG00000014220	smg5	100	84.752	Cynoglossus_semilaevis
ENSHBUG00000008654	smg5	99	79.961	ENSCVAG00000000529	smg5	99	79.572	Cyprinodon_variegatus
ENSHBUG00000008654	smg5	100	77.582	ENSDARG00000041481	smg5	100	77.582	Danio_rerio
ENSHBUG00000008654	smg5	92	32.421	ENSDNOG00000039862	-	85	38.736	Dasypus_novemcinctus
ENSHBUG00000008654	smg5	99	62.476	ENSDNOG00000000051	SMG5	99	61.886	Dasypus_novemcinctus
ENSHBUG00000008654	smg5	99	65.717	ENSDORG00000010382	Smg5	99	64.292	Dipodomys_ordii
ENSHBUG00000008654	smg5	53	32.484	FBgn0019890	Smg5	65	30.000	Drosophila_melanogaster
ENSHBUG00000008654	smg5	76	85.437	ENSETEG00000010336	SMG5	82	85.437	Echinops_telfairi
ENSHBUG00000008654	smg5	91	45.969	ENSEBUG00000003739	smg5	99	45.675	Eptatretus_burgeri
ENSHBUG00000008654	smg5	99	65.842	ENSEASG00005019122	SMG5	99	65.159	Equus_asinus_asinus
ENSHBUG00000008654	smg5	99	65.779	ENSECAG00000001389	SMG5	99	65.063	Equus_caballus
ENSHBUG00000008654	smg5	72	78.814	ENSEEUG00000012690	SMG5	75	77.465	Erinaceus_europaeus
ENSHBUG00000008654	smg5	99	82.091	ENSELUG00000012585	smg5	99	81.123	Esox_lucius
ENSHBUG00000008654	smg5	99	64.575	ENSFCAG00000011783	SMG5	99	64.341	Felis_catus
ENSHBUG00000008654	smg5	57	68.719	ENSFALG00000001166	-	95	66.722	Ficedula_albicollis
ENSHBUG00000008654	smg5	98	64.202	ENSFDAG00000017388	SMG5	100	63.583	Fukomys_damarensis
ENSHBUG00000008654	smg5	98	77.687	ENSFHEG00000013939	smg5	94	91.429	Fundulus_heteroclitus
ENSHBUG00000008654	smg5	100	78.759	ENSGMOG00000007310	smg5	100	78.303	Gadus_morhua
ENSHBUG00000008654	smg5	99	66.317	ENSGALG00000029918	-	99	65.316	Gallus_gallus
ENSHBUG00000008654	smg5	93	90.096	ENSGAFG00000021691	smg5	99	90.096	Gambusia_affinis
ENSHBUG00000008654	smg5	100	86.131	ENSGACG00000013142	smg5	100	85.159	Gasterosteus_aculeatus
ENSHBUG00000008654	smg5	100	66.478	ENSGAGG00000016131	SMG5	99	65.453	Gopherus_agassizii
ENSHBUG00000008654	smg5	99	65.189	ENSGGOG00000010932	SMG5	99	64.115	Gorilla_gorilla
ENSHBUG00000008654	smg5	99	64.259	ENSHGLG00000019152	SMG5	99	64.061	Heterocephalus_glaber_female
ENSHBUG00000008654	smg5	90	64.805	ENSHGLG00100015948	SMG5	99	64.588	Heterocephalus_glaber_male
ENSHBUG00000008654	smg5	88	83.373	ENSHCOG00000010229	smg5	94	83.133	Hippocampus_comes
ENSHBUG00000008654	smg5	100	77.573	ENSIPUG00000006624	Smg5	100	77.160	Ictalurus_punctatus
ENSHBUG00000008654	smg5	99	65.081	ENSSTOG00000001780	SMG5	99	64.633	Ictidomys_tridecemlineatus
ENSHBUG00000008654	smg5	99	65.048	ENSJJAG00000022763	Smg5	99	64.734	Jaculus_jaculus
ENSHBUG00000008654	smg5	100	88.820	ENSKMAG00000014586	smg5	100	89.096	Kryptolebias_marmoratus
ENSHBUG00000008654	smg5	100	89.067	ENSLBEG00000002145	smg5	100	89.432	Labrus_bergylta
ENSHBUG00000008654	smg5	99	59.641	ENSLACG00000010521	SMG5	99	59.375	Latimeria_chalumnae
ENSHBUG00000008654	smg5	96	85.012	ENSLOCG00000008380	smg5	87	85.012	Lepisosteus_oculatus
ENSHBUG00000008654	smg5	99	64.745	ENSLAFG00000006241	SMG5	99	64.361	Loxodonta_africana
ENSHBUG00000008654	smg5	99	65.366	ENSMFAG00000045357	SMG5	99	64.211	Macaca_fascicularis
ENSHBUG00000008654	smg5	92	78.588	ENSMMUG00000000090	SMG5	99	64.865	Macaca_mulatta
ENSHBUG00000008654	smg5	99	65.271	ENSMNEG00000044425	SMG5	99	64.115	Macaca_nemestrina
ENSHBUG00000008654	smg5	99	60.000	ENSMLEG00000041192	SMG5	93	65.463	Mandrillus_leucophaeus
ENSHBUG00000008654	smg5	100	88.741	ENSMAMG00000010683	smg5	100	88.387	Mastacembelus_armatus
ENSHBUG00000008654	smg5	62	93.972	ENSMZEG00005016543	smg5	100	93.045	Maylandia_zebra
ENSHBUG00000008654	smg5	100	92.174	ENSMZEG00005015815	smg5	100	92.174	Maylandia_zebra
ENSHBUG00000008654	smg5	56	39.966	ENSMAUG00000000043	-	71	49.136	Mesocricetus_auratus
ENSHBUG00000008654	smg5	99	66.121	ENSMAUG00000010381	Smg5	99	64.706	Mesocricetus_auratus
ENSHBUG00000008654	smg5	99	65.777	ENSMICG00000002257	SMG5	99	64.683	Microcebus_murinus
ENSHBUG00000008654	smg5	99	64.751	ENSMOCG00000016590	Smg5	99	64.293	Microtus_ochrogaster
ENSHBUG00000008654	smg5	100	84.867	ENSMMOG00000017199	smg5	100	85.133	Mola_mola
ENSHBUG00000008654	smg5	87	65.755	ENSMODG00000016901	SMG5	98	64.744	Monodelphis_domestica
ENSHBUG00000008654	smg5	77	35.062	ENSMODG00000004532	-	89	34.411	Monodelphis_domestica
ENSHBUG00000008654	smg5	75	33.590	ENSMODG00000010675	-	88	33.846	Monodelphis_domestica
ENSHBUG00000008654	smg5	74	34.232	ENSMODG00000004735	-	86	34.324	Monodelphis_domestica
ENSHBUG00000008654	smg5	97	30.709	ENSMODG00000004511	-	82	35.401	Monodelphis_domestica
ENSHBUG00000008654	smg5	100	88.110	ENSMALG00000010375	smg5	100	87.400	Monopterus_albus
ENSHBUG00000008654	smg5	99	65.524	MGP_CAROLIEiJ_G0025163	Smg5	100	88.268	Mus_caroli
ENSHBUG00000008654	smg5	99	65.649	ENSMUSG00000001415	Smg5	99	88.268	Mus_musculus
ENSHBUG00000008654	smg5	99	65.810	MGP_PahariEiJ_G0026606	Smg5	100	88.827	Mus_pahari
ENSHBUG00000008654	smg5	99	65.553	MGP_SPRETEiJ_G0026104	Smg5	100	88.268	Mus_spretus
ENSHBUG00000008654	smg5	94	63.544	ENSMPUG00000004546	SMG5	100	63.367	Mustela_putorius_furo
ENSHBUG00000008654	smg5	99	65.557	ENSMLUG00000008518	SMG5	99	65.355	Myotis_lucifugus
ENSHBUG00000008654	smg5	78	49.383	ENSNGAG00000012101	-	93	48.655	Nannospalax_galili
ENSHBUG00000008654	smg5	99	65.388	ENSNGAG00000020706	Smg5	99	64.875	Nannospalax_galili
ENSHBUG00000008654	smg5	97	88.611	ENSNBRG00000004332	smg5	98	88.554	Neolamprologus_brichardi
ENSHBUG00000008654	smg5	99	65.271	ENSNLEG00000012439	SMG5	99	64.402	Nomascus_leucogenys
ENSHBUG00000008654	smg5	99	64.813	ENSMEUG00000012834	SMG5	99	63.636	Notamacropus_eugenii
ENSHBUG00000008654	smg5	99	64.986	ENSOPRG00000009152	SMG5	99	64.689	Ochotona_princeps
ENSHBUG00000008654	smg5	99	64.762	ENSODEG00000012237	SMG5	99	65.679	Octodon_degus
ENSHBUG00000008654	smg5	100	97.693	ENSONIG00000008632	smg5	100	97.693	Oreochromis_niloticus
ENSHBUG00000008654	smg5	98	64.917	ENSOCUG00000012886	SMG5	100	64.293	Oryctolagus_cuniculus
ENSHBUG00000008654	smg5	90	35.974	ENSOCUG00000023338	-	91	43.810	Oryctolagus_cuniculus
ENSHBUG00000008654	smg5	100	85.169	ENSORLG00000016239	smg5	100	85.372	Oryzias_latipes
ENSHBUG00000008654	smg5	100	85.448	ENSORLG00020013127	smg5	100	85.359	Oryzias_latipes_hni
ENSHBUG00000008654	smg5	100	85.080	ENSORLG00015019014	smg5	100	85.182	Oryzias_latipes_hsok
ENSHBUG00000008654	smg5	84	84.249	ENSOMEG00000021330	smg5	93	85.539	Oryzias_melastigma
ENSHBUG00000008654	smg5	99	64.183	ENSOGAG00000004966	SMG5	99	64.293	Otolemur_garnettii
ENSHBUG00000008654	smg5	99	39.729	ENSOARG00000011963	-	92	50.243	Ovis_aries
ENSHBUG00000008654	smg5	99	66.000	ENSOARG00000005778	SMG5	93	75.621	Ovis_aries
ENSHBUG00000008654	smg5	99	65.176	ENSPPAG00000011996	SMG5	99	64.211	Pan_paniscus
ENSHBUG00000008654	smg5	91	78.465	ENSPPRG00000011901	SMG5	100	64.067	Panthera_pardus
ENSHBUG00000008654	smg5	90	76.179	ENSPTIG00000007892	SMG5	98	60.321	Panthera_tigris_altaica
ENSHBUG00000008654	smg5	99	65.176	ENSPTRG00000023925	SMG5	99	64.211	Pan_troglodytes
ENSHBUG00000008654	smg5	86	78.371	ENSPTRG00000049282	-	99	64.211	Pan_troglodytes
ENSHBUG00000008654	smg5	99	65.366	ENSPANG00000011201	SMG5	99	64.211	Papio_anubis
ENSHBUG00000008654	smg5	100	76.798	ENSPKIG00000009402	smg5	100	75.717	Paramormyrops_kingsleyae
ENSHBUG00000008654	smg5	98	67.372	ENSPSIG00000015198	SMG5	100	66.149	Pelodiscus_sinensis
ENSHBUG00000008654	smg5	100	72.784	ENSPMGG00000010465	smg5	100	71.656	Periophthalmus_magnuspinnatus
ENSHBUG00000008654	smg5	58	40.747	ENSPEMG00000010022	-	68	50.000	Peromyscus_maniculatus_bairdii
ENSHBUG00000008654	smg5	99	65.580	ENSPEMG00000001819	Smg5	99	64.841	Peromyscus_maniculatus_bairdii
ENSHBUG00000008654	smg5	99	49.618	ENSPMAG00000000410	smg5	99	49.433	Petromyzon_marinus
ENSHBUG00000008654	smg5	99	65.990	ENSPCIG00000018938	SMG5	99	65.038	Phascolarctos_cinereus
ENSHBUG00000008654	smg5	100	87.911	ENSPFOG00000010191	smg5	100	87.289	Poecilia_formosa
ENSHBUG00000008654	smg5	100	88.000	ENSPLAG00000009332	smg5	100	87.467	Poecilia_latipinna
ENSHBUG00000008654	smg5	100	88.000	ENSPMEG00000014105	smg5	100	87.378	Poecilia_mexicana
ENSHBUG00000008654	smg5	100	87.822	ENSPREG00000017713	smg5	100	87.911	Poecilia_reticulata
ENSHBUG00000008654	smg5	99	65.176	ENSPPYG00000000723	SMG5	99	64.306	Pongo_abelii
ENSHBUG00000008654	smg5	74	79.444	ENSPCAG00000008412	SMG5	81	79.444	Procavia_capensis
ENSHBUG00000008654	smg5	99	65.682	ENSPCOG00000004741	SMG5	99	64.774	Propithecus_coquereli
ENSHBUG00000008654	smg5	93	64.336	ENSPVAG00000016748	SMG5	99	58.654	Pteropus_vampyrus
ENSHBUG00000008654	smg5	100	99.380	ENSPNYG00000013397	smg5	100	99.380	Pundamilia_nyererei
ENSHBUG00000008654	smg5	100	78.083	ENSPNAG00000028363	smg5	100	76.534	Pygocentrus_nattereri
ENSHBUG00000008654	smg5	99	65.777	ENSRNOG00000019590	Smg5	99	64.870	Rattus_norvegicus
ENSHBUG00000008654	smg5	99	65.366	ENSRBIG00000027428	SMG5	99	64.211	Rhinopithecus_bieti
ENSHBUG00000008654	smg5	99	65.271	ENSRROG00000030035	SMG5	99	64.115	Rhinopithecus_roxellana
ENSHBUG00000008654	smg5	99	65.176	ENSSBOG00000033339	SMG5	99	64.581	Saimiri_boliviensis_boliviensis
ENSHBUG00000008654	smg5	98	65.044	ENSSHAG00000014163	SMG5	100	64.016	Sarcophilus_harrisii
ENSHBUG00000008654	smg5	84	38.525	ENSSHAG00000009572	-	79	41.076	Sarcophilus_harrisii
ENSHBUG00000008654	smg5	75	36.317	ENSSHAG00000000561	-	87	36.061	Sarcophilus_harrisii
ENSHBUG00000008654	smg5	55	36.061	ENSSHAG00000000935	-	81	36.061	Sarcophilus_harrisii
ENSHBUG00000008654	smg5	100	79.287	ENSSFOG00015024175	smg5	100	78.613	Scleropages_formosus
ENSHBUG00000008654	smg5	100	89.441	ENSSMAG00000013059	smg5	100	89.362	Scophthalmus_maximus
ENSHBUG00000008654	smg5	100	91.174	ENSSDUG00000007122	smg5	100	90.212	Seriola_dumerili
ENSHBUG00000008654	smg5	100	90.611	ENSSLDG00000011418	smg5	100	90.619	Seriola_lalandi_dorsalis
ENSHBUG00000008654	smg5	85	70.863	ENSSARG00000012484	SMG5	94	70.863	Sorex_araneus
ENSHBUG00000008654	smg5	94	64.392	ENSSPUG00000002260	SMG5	100	65.300	Sphenodon_punctatus
ENSHBUG00000008654	smg5	100	91.512	ENSSPAG00000014266	smg5	100	91.166	Stegastes_partitus
ENSHBUG00000008654	smg5	91	60.260	ENSSSCG00000039308	-	99	50.729	Sus_scrofa
ENSHBUG00000008654	smg5	99	65.366	ENSSSCG00000006490	-	100	64.242	Sus_scrofa
ENSHBUG00000008654	smg5	99	67.681	ENSTGUG00000003748	-	99	66.383	Taeniopygia_guttata
ENSHBUG00000008654	smg5	100	80.053	ENSTRUG00000012580	smg5	100	78.994	Takifugu_rubripes
ENSHBUG00000008654	smg5	99	81.358	ENSTNIG00000010303	smg5	99	81.071	Tetraodon_nigroviridis
ENSHBUG00000008654	smg5	57	84.236	ENSTBEG00000002777	SMG5	58	84.236	Tupaia_belangeri
ENSHBUG00000008654	smg5	99	60.724	ENSTTRG00000001401	SMG5	99	60.443	Tursiops_truncatus
ENSHBUG00000008654	smg5	92	76.667	ENSUAMG00000013721	SMG5	99	63.715	Ursus_americanus
ENSHBUG00000008654	smg5	91	74.815	ENSUMAG00000018041	SMG5	95	72.494	Ursus_maritimus
ENSHBUG00000008654	smg5	92	71.782	ENSVPAG00000009446	SMG5	99	56.539	Vicugna_pacos
ENSHBUG00000008654	smg5	99	65.444	ENSVVUG00000005887	SMG5	99	64.694	Vulpes_vulpes
ENSHBUG00000008654	smg5	77	58.465	ENSXETG00000033791	SMG5	95	59.645	Xenopus_tropicalis
ENSHBUG00000008654	smg5	92	92.973	ENSXCOG00000004379	smg5	99	93.956	Xiphophorus_couchianus
ENSHBUG00000008654	smg5	100	87.289	ENSXMAG00000013499	smg5	100	86.667	Xiphophorus_maculatus