EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000008858 (Gene tree)
Gene ID: 102299053
Gene Symbol: lsm4
Alias: zgc:73057|zgc:77848
Full Name: LSM4 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 5233 bases
Position: chrJH425982.1:178441-183673
Accession: 102299053
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000007381	LSM	PF01423.22	1.5e-16	1	1
ENSHBUP00000007373	LSM	PF01423.22	1.6e-16	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000003747	-	2876	XM_005949028	ENSHBUP00000007373	183 (aa)	XP_005949090	UPI0003BCB95E
ENSHBUT00000003731	-	3870	-	ENSHBUP00000007381	178 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000008858's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000008858's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000008858	lsm4	59	33.333	ENSHBUG00000001332	snrpd3l	91	32.031

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000008858	lsm4	80	93.377	ENSAPOG00000005643	lsm4	100	93.377	Acanthochromis_polyacanthus
ENSHBUG00000008858	lsm4	80	95.270	ENSAOCG00000006414	lsm4	100	95.270	Amphiprion_ocellaris
ENSHBUG00000008858	lsm4	80	94.631	ENSAPEG00000006238	lsm4	100	94.631	Amphiprion_percula
ENSHBUG00000008858	lsm4	80	90.132	ENSATEG00000016559	lsm4	100	90.789	Anabas_testudineus
ENSHBUG00000008858	lsm4	80	99.320	ENSACLG00000022738	lsm4	100	99.320	Astatotilapia_calliptera
ENSHBUG00000008858	lsm4	80	87.075	ENSAMXG00000016932	lsm4	100	86.395	Astyanax_mexicanus
ENSHBUG00000008858	lsm4	61	95.413	ENSCPBG00000012925	LSM4	96	84.173	Chrysemys_picta_bellii
ENSHBUG00000008858	lsm4	80	84.932	ENSCSEG00000016127	lsm4	100	91.781	Cynoglossus_semilaevis
ENSHBUG00000008858	lsm4	80	92.466	ENSCVAG00000010601	lsm4	100	92.466	Cyprinodon_variegatus
ENSHBUG00000008858	lsm4	72	91.603	ENSCVAG00000021828	lsm4	98	91.603	Cyprinodon_variegatus
ENSHBUG00000008858	lsm4	77	82.993	ENSDARG00000023852	lsm4	99	85.714	Danio_rerio
ENSHBUG00000008858	lsm4	56	81.000	FBgn0032240	CG17768	58	86.667	Drosophila_melanogaster
ENSHBUG00000008858	lsm4	74	89.706	ENSELUG00000012821	lsm4	100	88.971	Esox_lucius
ENSHBUG00000008858	lsm4	61	95.370	ENSFALG00000009478	LSM4	96	84.058	Ficedula_albicollis
ENSHBUG00000008858	lsm4	79	81.333	ENSGMOG00000007729	lsm4	99	82.000	Gadus_morhua
ENSHBUG00000008858	lsm4	61	95.413	ENSGALG00000003385	LSM4	96	84.173	Gallus_gallus
ENSHBUG00000008858	lsm4	96	82.286	ENSGAFG00000004903	lsm4	97	89.313	Gambusia_affinis
ENSHBUG00000008858	lsm4	80	86.000	ENSGACG00000008140	lsm4	100	89.333	Gasterosteus_aculeatus
ENSHBUG00000008858	lsm4	61	95.413	ENSGAGG00000017812	LSM4	96	84.173	Gopherus_agassizii
ENSHBUG00000008858	lsm4	77	76.923	ENSHGLG00000006568	LSM4	99	82.517	Heterocephalus_glaber_female
ENSHBUG00000008858	lsm4	52	98.913	ENSHGLG00100007894	LSM4	99	98.913	Heterocephalus_glaber_male
ENSHBUG00000008858	lsm4	80	93.151	ENSHCOG00000008819	lsm4	100	93.151	Hippocampus_comes
ENSHBUG00000008858	lsm4	80	87.075	ENSIPUG00000005368	Lsm4	100	86.395	Ictalurus_punctatus
ENSHBUG00000008858	lsm4	80	89.726	ENSKMAG00000005073	lsm4	100	92.466	Kryptolebias_marmoratus
ENSHBUG00000008858	lsm4	80	94.631	ENSLBEG00000027930	lsm4	100	94.631	Labrus_bergylta
ENSHBUG00000008858	lsm4	77	83.688	ENSLACG00000015861	LSM4	99	84.138	Latimeria_chalumnae
ENSHBUG00000008858	lsm4	69	89.062	ENSLOCG00000002025	lsm4	100	84.354	Lepisosteus_oculatus
ENSHBUG00000008858	lsm4	80	94.521	ENSMAMG00000006190	lsm4	100	94.521	Mastacembelus_armatus
ENSHBUG00000008858	lsm4	80	100.000	ENSMZEG00005016420	lsm4	100	100.000	Maylandia_zebra
ENSHBUG00000008858	lsm4	61	95.370	ENSMGAG00000004976	LSM4	96	81.295	Meleagris_gallopavo
ENSHBUG00000008858	lsm4	56	95.960	ENSMICG00000000222	LSM4	71	95.960	Microcebus_murinus
ENSHBUG00000008858	lsm4	53	95.745	ENSMODG00000015044	-	98	77.344	Monodelphis_domestica
ENSHBUG00000008858	lsm4	80	92.466	ENSMALG00000018159	lsm4	100	91.781	Monopterus_albus
ENSHBUG00000008858	lsm4	62	100.000	ENSNBRG00000022150	lsm4	68	100.000	Neolamprologus_brichardi
ENSHBUG00000008858	lsm4	77	59.441	ENSODEG00000011712	-	98	50.704	Octodon_degus
ENSHBUG00000008858	lsm4	80	99.320	ENSONIG00000012724	lsm4	100	99.320	Oreochromis_niloticus
ENSHBUG00000008858	lsm4	80	92.466	ENSORLG00000008391	lsm4	100	92.466	Oryzias_latipes
ENSHBUG00000008858	lsm4	80	93.151	ENSORLG00020014829	lsm4	100	93.151	Oryzias_latipes_hni
ENSHBUG00000008858	lsm4	80	92.466	ENSORLG00015010205	lsm4	100	92.466	Oryzias_latipes_hsok
ENSHBUG00000008858	lsm4	80	91.781	ENSOMEG00000003606	lsm4	100	91.781	Oryzias_melastigma
ENSHBUG00000008858	lsm4	55	95.918	ENSOGAG00000027992	LSM4	67	95.918	Otolemur_garnettii
ENSHBUG00000008858	lsm4	80	86.395	ENSPKIG00000006154	lsm4	100	85.714	Paramormyrops_kingsleyae
ENSHBUG00000008858	lsm4	61	95.370	ENSPSIG00000012358	LSM4	96	83.333	Pelodiscus_sinensis
ENSHBUG00000008858	lsm4	96	81.143	ENSPFOG00000000570	lsm4	90	81.143	Poecilia_formosa
ENSHBUG00000008858	lsm4	80	90.411	ENSPLAG00000016267	lsm4	100	90.411	Poecilia_latipinna
ENSHBUG00000008858	lsm4	80	91.096	ENSPMEG00000016378	lsm4	100	91.096	Poecilia_mexicana
ENSHBUG00000008858	lsm4	96	80.682	ENSPREG00000011290	lsm4	90	80.682	Poecilia_reticulata
ENSHBUG00000008858	lsm4	56	95.960	ENSPCOG00000019837	LSM4	71	95.960	Propithecus_coquereli
ENSHBUG00000008858	lsm4	80	100.000	ENSPNYG00000016794	lsm4	100	100.000	Pundamilia_nyererei
ENSHBUG00000008858	lsm4	76	89.928	ENSPNAG00000016598	lsm4	100	89.209	Pygocentrus_nattereri
ENSHBUG00000008858	lsm4	61	96.330	ENSSHAG00000011559	LSM4	99	82.517	Sarcophilus_harrisii
ENSHBUG00000008858	lsm4	80	87.075	ENSSFOG00015021067	lsm4	100	86.395	Scleropages_formosus
ENSHBUG00000008858	lsm4	80	80.000	ENSSMAG00000021020	lsm4	100	92.000	Scophthalmus_maximus
ENSHBUG00000008858	lsm4	80	85.030	ENSSDUG00000009588	lsm4	100	85.030	Seriola_dumerili
ENSHBUG00000008858	lsm4	80	84.524	ENSSLDG00000006827	lsm4	100	84.524	Seriola_lalandi_dorsalis
ENSHBUG00000008858	lsm4	80	93.377	ENSSPAG00000011615	lsm4	100	93.377	Stegastes_partitus
ENSHBUG00000008858	lsm4	80	92.466	ENSTRUG00000021737	lsm4	100	91.781	Takifugu_rubripes
ENSHBUG00000008858	lsm4	80	89.796	ENSTNIG00000010191	lsm4	100	89.116	Tetraodon_nigroviridis
ENSHBUG00000008858	lsm4	55	96.939	ENSXETG00000024933	lsm4	99	83.099	Xenopus_tropicalis
ENSHBUG00000008858	lsm4	93	81.287	ENSXMAG00000026672	lsm4	87	81.287	Xiphophorus_maculatus