EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000008939 (Gene tree)
Gene ID: 102299368
Gene Symbol: upf1 (1 of many)
Alias: HUPF1|KIAA0221|NORF1|RENT1|pNORF1|smg-2
Full Name: UPF1%2C RNA helicase and ATPase
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 16152 bases
Position: chrJH425982.1:148263-164414
Accession: 102299368
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000007395	UPF1_Zn_bind	PF09416.10	8.2e-75	1	1
ENSHBUP00000007395	ResIII	PF04851.15	2.7e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000003705	-	3015	XM_014329837	ENSHBUP00000007395	1004 (aa)	XP_014185323	-

Gene Model

Click here to download ENSHBUG00000008939's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000008939's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000008939	upf1	100	77.602	ENSHBUG00000014694	upf1	100	77.602

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000008939	upf1	95	100.000	ENSG00000005007	UPF1	87	100.000	Homo_sapiens
ENSHBUG00000008939	upf1	95	100.000	ENSAPOG00000023773	upf1	87	100.000	Acanthochromis_polyacanthus
ENSHBUG00000008939	upf1	95	100.000	ENSAPOG00000010916	-	86	100.000	Acanthochromis_polyacanthus
ENSHBUG00000008939	upf1	95	100.000	ENSAMEG00000011474	UPF1	87	100.000	Ailuropoda_melanoleuca
ENSHBUG00000008939	upf1	95	97.436	ENSACIG00000019949	upf1	86	97.436	Amphilophus_citrinellus
ENSHBUG00000008939	upf1	88	100.000	ENSACIG00000010985	-	86	100.000	Amphilophus_citrinellus
ENSHBUG00000008939	upf1	95	100.000	ENSAOCG00000018519	upf1	87	100.000	Amphiprion_ocellaris
ENSHBUG00000008939	upf1	95	100.000	ENSAOCG00000006352	-	86	100.000	Amphiprion_ocellaris
ENSHBUG00000008939	upf1	95	100.000	ENSAPEG00000016344	upf1	87	100.000	Amphiprion_percula
ENSHBUG00000008939	upf1	95	100.000	ENSAPEG00000006292	-	86	100.000	Amphiprion_percula
ENSHBUG00000008939	upf1	95	100.000	ENSATEG00000016606	-	86	100.000	Anabas_testudineus
ENSHBUG00000008939	upf1	95	100.000	ENSATEG00000017867	upf1	85	100.000	Anabas_testudineus
ENSHBUG00000008939	upf1	90	100.000	ENSAPLG00000009175	UPF1	86	100.000	Anas_platyrhynchos
ENSHBUG00000008939	upf1	89	100.000	ENSANAG00000024107	UPF1	82	100.000	Aotus_nancymaae
ENSHBUG00000008939	upf1	95	97.436	ENSACLG00000007181	upf1	86	97.436	Astatotilapia_calliptera
ENSHBUG00000008939	upf1	95	100.000	ENSACLG00000022630	-	86	100.000	Astatotilapia_calliptera
ENSHBUG00000008939	upf1	95	97.436	ENSAMXG00000042187	upf1	86	97.436	Astyanax_mexicanus
ENSHBUG00000008939	upf1	95	100.000	ENSBTAG00000020922	UPF1	87	100.000	Bos_taurus
ENSHBUG00000008939	upf1	90	54.828	WBGene00004880	smg-2	83	54.515	Caenorhabditis_elegans
ENSHBUG00000008939	upf1	95	100.000	ENSCJAG00000019627	UPF1	87	100.000	Callithrix_jacchus
ENSHBUG00000008939	upf1	95	100.000	ENSCAFG00000014578	UPF1	87	100.000	Canis_familiaris
ENSHBUG00000008939	upf1	95	100.000	ENSCAFG00020012347	UPF1	87	100.000	Canis_lupus_dingo
ENSHBUG00000008939	upf1	95	100.000	ENSCHIG00000011018	UPF1	87	100.000	Capra_hircus
ENSHBUG00000008939	upf1	89	100.000	ENSTSYG00000008877	UPF1	84	100.000	Carlito_syrichta
ENSHBUG00000008939	upf1	91	100.000	ENSCAPG00000005758	UPF1	83	100.000	Cavia_aperea
ENSHBUG00000008939	upf1	95	100.000	ENSCPOG00000025463	UPF1	87	100.000	Cavia_porcellus
ENSHBUG00000008939	upf1	95	100.000	ENSCCAG00000032175	UPF1	87	100.000	Cebus_capucinus
ENSHBUG00000008939	upf1	89	100.000	ENSCATG00000040306	UPF1	84	100.000	Cercocebus_atys
ENSHBUG00000008939	upf1	90	100.000	ENSCLAG00000004037	UPF1	86	100.000	Chinchilla_lanigera
ENSHBUG00000008939	upf1	95	100.000	ENSCSAG00000005276	UPF1	87	100.000	Chlorocebus_sabaeus
ENSHBUG00000008939	upf1	95	100.000	ENSCPBG00000012513	UPF1	87	100.000	Chrysemys_picta_bellii
ENSHBUG00000008939	upf1	85	79.532	ENSCING00000021399	-	99	78.571	Ciona_intestinalis
ENSHBUG00000008939	upf1	95	77.462	ENSCSAVG00000006533	-	87	77.681	Ciona_savignyi
ENSHBUG00000008939	upf1	89	100.000	ENSCANG00000029819	UPF1	84	100.000	Colobus_angolensis_palliatus
ENSHBUG00000008939	upf1	95	100.000	ENSCGRG00001021067	Upf1	89	100.000	Cricetulus_griseus_chok1gshd
ENSHBUG00000008939	upf1	90	100.000	ENSCGRG00000013480	Upf1	85	100.000	Cricetulus_griseus_crigri
ENSHBUG00000008939	upf1	95	100.000	ENSCSEG00000016159	-	87	100.000	Cynoglossus_semilaevis
ENSHBUG00000008939	upf1	95	100.000	ENSCSEG00000017239	upf1	87	100.000	Cynoglossus_semilaevis
ENSHBUG00000008939	upf1	95	100.000	ENSCVAG00000010561	upf1	86	100.000	Cyprinodon_variegatus
ENSHBUG00000008939	upf1	95	97.436	ENSDARG00000016302	upf1	86	97.436	Danio_rerio
ENSHBUG00000008939	upf1	89	100.000	ENSDORG00000009984	Upf1	82	100.000	Dipodomys_ordii
ENSHBUG00000008939	upf1	91	72.030	FBgn0030354	Upf1	78	72.108	Drosophila_melanogaster
ENSHBUG00000008939	upf1	60	86.634	ENSEBUG00000010069	upf1	96	86.964	Eptatretus_burgeri
ENSHBUG00000008939	upf1	95	100.000	ENSEASG00005006549	UPF1	87	100.000	Equus_asinus_asinus
ENSHBUG00000008939	upf1	95	100.000	ENSECAG00000010639	UPF1	87	100.000	Equus_caballus
ENSHBUG00000008939	upf1	95	95.952	ENSELUG00000020917	upf1	92	93.213	Esox_lucius
ENSHBUG00000008939	upf1	95	100.000	ENSELUG00000012916	-	86	100.000	Esox_lucius
ENSHBUG00000008939	upf1	95	100.000	ENSFCAG00000009757	UPF1	87	100.000	Felis_catus
ENSHBUG00000008939	upf1	90	100.000	ENSFALG00000009312	UPF1	83	100.000	Ficedula_albicollis
ENSHBUG00000008939	upf1	91	100.000	ENSFDAG00000014816	UPF1	86	100.000	Fukomys_damarensis
ENSHBUG00000008939	upf1	95	93.261	ENSFHEG00000006428	upf1	100	85.056	Fundulus_heteroclitus
ENSHBUG00000008939	upf1	80	100.000	ENSFHEG00000016276	-	81	100.000	Fundulus_heteroclitus
ENSHBUG00000008939	upf1	95	97.436	ENSGMOG00000007541	upf1	87	97.436	Gadus_morhua
ENSHBUG00000008939	upf1	95	100.000	ENSGALG00000003220	UPF1	87	100.000	Gallus_gallus
ENSHBUG00000008939	upf1	95	100.000	ENSGAFG00000004831	upf1	87	100.000	Gambusia_affinis
ENSHBUG00000008939	upf1	66	95.173	ENSGAFG00000015443	-	81	95.173	Gambusia_affinis
ENSHBUG00000008939	upf1	95	100.000	ENSGAGG00000022217	UPF1	87	100.000	Gopherus_agassizii
ENSHBUG00000008939	upf1	89	100.000	ENSGGOG00000002608	UPF1	85	100.000	Gorilla_gorilla
ENSHBUG00000008939	upf1	95	100.000	ENSHGLG00000010900	UPF1	87	100.000	Heterocephalus_glaber_female
ENSHBUG00000008939	upf1	89	100.000	ENSHGLG00100005904	UPF1	83	100.000	Heterocephalus_glaber_male
ENSHBUG00000008939	upf1	95	100.000	ENSHCOG00000008918	upf1	86	100.000	Hippocampus_comes
ENSHBUG00000008939	upf1	95	97.436	ENSIPUG00000005108	UPF1	86	97.436	Ictalurus_punctatus
ENSHBUG00000008939	upf1	95	100.000	ENSSTOG00000009196	UPF1	88	100.000	Ictidomys_tridecemlineatus
ENSHBUG00000008939	upf1	95	100.000	ENSJJAG00000023151	Upf1	87	100.000	Jaculus_jaculus
ENSHBUG00000008939	upf1	95	100.000	ENSKMAG00000004962	upf1	86	100.000	Kryptolebias_marmoratus
ENSHBUG00000008939	upf1	95	100.000	ENSLBEG00000027848	-	86	100.000	Labrus_bergylta
ENSHBUG00000008939	upf1	95	97.436	ENSLBEG00000014862	upf1	85	97.436	Labrus_bergylta
ENSHBUG00000008939	upf1	55	100.000	ENSLACG00000008482	UPF1	79	100.000	Latimeria_chalumnae
ENSHBUG00000008939	upf1	95	97.436	ENSLOCG00000002072	upf1	86	97.436	Lepisosteus_oculatus
ENSHBUG00000008939	upf1	95	97.436	ENSLAFG00000014963	UPF1	87	97.436	Loxodonta_africana
ENSHBUG00000008939	upf1	95	100.000	ENSMFAG00000037748	UPF1	87	100.000	Macaca_fascicularis
ENSHBUG00000008939	upf1	95	100.000	ENSMMUG00000023286	UPF1	87	100.000	Macaca_mulatta
ENSHBUG00000008939	upf1	95	100.000	ENSMNEG00000000046	UPF1	87	100.000	Macaca_nemestrina
ENSHBUG00000008939	upf1	89	100.000	ENSMLEG00000028404	UPF1	86	100.000	Mandrillus_leucophaeus
ENSHBUG00000008939	upf1	95	100.000	ENSMAMG00000006231	-	86	100.000	Mastacembelus_armatus
ENSHBUG00000008939	upf1	95	100.000	ENSMAMG00000006229	upf1	85	100.000	Mastacembelus_armatus
ENSHBUG00000008939	upf1	95	100.000	ENSMZEG00005016386	-	86	100.000	Maylandia_zebra
ENSHBUG00000008939	upf1	95	97.436	ENSMZEG00005003489	upf1	85	97.436	Maylandia_zebra
ENSHBUG00000008939	upf1	89	100.000	ENSMGAG00000004745	UPF1	86	100.000	Meleagris_gallopavo
ENSHBUG00000008939	upf1	91	100.000	ENSMAUG00000011398	Upf1	84	100.000	Mesocricetus_auratus
ENSHBUG00000008939	upf1	95	100.000	ENSMICG00000001659	UPF1	87	100.000	Microcebus_murinus
ENSHBUG00000008939	upf1	95	100.000	ENSMOCG00000005699	Upf1	87	100.000	Microtus_ochrogaster
ENSHBUG00000008939	upf1	89	97.436	ENSMMOG00000007537	-	85	97.436	Mola_mola
ENSHBUG00000008939	upf1	95	97.436	ENSMMOG00000007881	upf1	87	97.436	Mola_mola
ENSHBUG00000008939	upf1	95	100.000	ENSMODG00000003689	UPF1	87	100.000	Monodelphis_domestica
ENSHBUG00000008939	upf1	95	100.000	ENSMALG00000000144	upf1	88	100.000	Monopterus_albus
ENSHBUG00000008939	upf1	95	100.000	ENSMALG00000018100	-	86	100.000	Monopterus_albus
ENSHBUG00000008939	upf1	95	100.000	MGP_CAROLIEiJ_G0031142	Upf1	87	100.000	Mus_caroli
ENSHBUG00000008939	upf1	95	100.000	ENSMUSG00000058301	Upf1	87	100.000	Mus_musculus
ENSHBUG00000008939	upf1	95	100.000	MGP_PahariEiJ_G0021607	Upf1	87	100.000	Mus_pahari
ENSHBUG00000008939	upf1	95	100.000	MGP_SPRETEiJ_G0032260	Upf1	87	100.000	Mus_spretus
ENSHBUG00000008939	upf1	95	100.000	ENSMPUG00000015516	UPF1	87	100.000	Mustela_putorius_furo
ENSHBUG00000008939	upf1	95	100.000	ENSMLUG00000012122	UPF1	87	100.000	Myotis_lucifugus
ENSHBUG00000008939	upf1	95	100.000	ENSNGAG00000024107	Upf1	87	100.000	Nannospalax_galili
ENSHBUG00000008939	upf1	95	100.000	ENSNBRG00000022069	-	87	100.000	Neolamprologus_brichardi
ENSHBUG00000008939	upf1	97	97.436	ENSNBRG00000000670	upf1	89	97.436	Neolamprologus_brichardi
ENSHBUG00000008939	upf1	89	100.000	ENSNLEG00000006062	UPF1	85	100.000	Nomascus_leucogenys
ENSHBUG00000008939	upf1	77	100.000	ENSMEUG00000014146	-	70	100.000	Notamacropus_eugenii
ENSHBUG00000008939	upf1	89	100.000	ENSOPRG00000014018	UPF1	86	100.000	Ochotona_princeps
ENSHBUG00000008939	upf1	95	100.000	ENSODEG00000012426	UPF1	87	100.000	Octodon_degus
ENSHBUG00000008939	upf1	95	97.436	ENSONIG00000010452	upf1	86	97.436	Oreochromis_niloticus
ENSHBUG00000008939	upf1	95	100.000	ENSONIG00000012729	-	86	100.000	Oreochromis_niloticus
ENSHBUG00000008939	upf1	95	97.436	ENSOANG00000004568	UPF1	87	97.436	Ornithorhynchus_anatinus
ENSHBUG00000008939	upf1	95	100.000	ENSORLG00000008453	upf1	86	100.000	Oryzias_latipes
ENSHBUG00000008939	upf1	95	100.000	ENSORLG00020014758	upf1	86	100.000	Oryzias_latipes_hni
ENSHBUG00000008939	upf1	95	100.000	ENSORLG00015010165	upf1	86	100.000	Oryzias_latipes_hsok
ENSHBUG00000008939	upf1	95	100.000	ENSOMEG00000003665	upf1	86	100.000	Oryzias_melastigma
ENSHBUG00000008939	upf1	95	100.000	ENSOGAG00000012866	UPF1	87	100.000	Otolemur_garnettii
ENSHBUG00000008939	upf1	91	91.915	ENSOARG00000010739	UPF1	87	91.915	Ovis_aries
ENSHBUG00000008939	upf1	89	100.000	ENSPPAG00000043884	UPF1	83	100.000	Pan_paniscus
ENSHBUG00000008939	upf1	95	100.000	ENSPPRG00000023470	UPF1	87	100.000	Panthera_pardus
ENSHBUG00000008939	upf1	90	100.000	ENSPTIG00000010159	UPF1	86	100.000	Panthera_tigris_altaica
ENSHBUG00000008939	upf1	95	100.000	ENSPTRG00000010721	UPF1	87	100.000	Pan_troglodytes
ENSHBUG00000008939	upf1	95	100.000	ENSPANG00000008847	UPF1	87	100.000	Papio_anubis
ENSHBUG00000008939	upf1	91	96.937	ENSPKIG00000006069	upf1	88	96.937	Paramormyrops_kingsleyae
ENSHBUG00000008939	upf1	62	100.000	ENSPSIG00000009491	UPF1	81	100.000	Pelodiscus_sinensis
ENSHBUG00000008939	upf1	95	94.967	ENSPMGG00000017327	upf1	87	94.967	Periophthalmus_magnuspinnatus
ENSHBUG00000008939	upf1	95	100.000	ENSPEMG00000001085	Upf1	87	100.000	Peromyscus_maniculatus_bairdii
ENSHBUG00000008939	upf1	99	89.744	ENSPMAG00000001206	upf1	89	89.744	Petromyzon_marinus
ENSHBUG00000008939	upf1	95	100.000	ENSPCIG00000006156	UPF1	87	100.000	Phascolarctos_cinereus
ENSHBUG00000008939	upf1	95	94.872	ENSPLAG00000018155	-	86	94.872	Poecilia_latipinna
ENSHBUG00000008939	upf1	95	100.000	ENSPLAG00000016232	-	87	100.000	Poecilia_latipinna
ENSHBUG00000008939	upf1	95	100.000	ENSPMEG00000016319	-	87	100.000	Poecilia_mexicana
ENSHBUG00000008939	upf1	95	94.872	ENSPMEG00000011443	-	87	94.872	Poecilia_mexicana
ENSHBUG00000008939	upf1	95	100.000	ENSPREG00000011247	-	87	100.000	Poecilia_reticulata
ENSHBUG00000008939	upf1	95	94.872	ENSPREG00000009940	upf1	86	94.872	Poecilia_reticulata
ENSHBUG00000008939	upf1	95	100.000	ENSPPYG00000009752	UPF1	87	100.000	Pongo_abelii
ENSHBUG00000008939	upf1	70	98.653	ENSPCAG00000012962	UPF1	64	98.653	Procavia_capensis
ENSHBUG00000008939	upf1	95	100.000	ENSPCOG00000023813	UPF1	87	100.000	Propithecus_coquereli
ENSHBUG00000008939	upf1	75	100.000	ENSPVAG00000003183	UPF1	69	100.000	Pteropus_vampyrus
ENSHBUG00000008939	upf1	95	97.436	ENSPNYG00000003694	upf1	85	97.436	Pundamilia_nyererei
ENSHBUG00000008939	upf1	95	100.000	ENSPNYG00000016731	-	86	100.000	Pundamilia_nyererei
ENSHBUG00000008939	upf1	95	97.436	ENSPNAG00000025614	upf1	86	97.436	Pygocentrus_nattereri
ENSHBUG00000008939	upf1	95	100.000	ENSRNOG00000020134	Upf1	87	100.000	Rattus_norvegicus
ENSHBUG00000008939	upf1	89	100.000	ENSRBIG00000013894	UPF1	83	100.000	Rhinopithecus_bieti
ENSHBUG00000008939	upf1	89	100.000	ENSRROG00000040935	UPF1	84	100.000	Rhinopithecus_roxellana
ENSHBUG00000008939	upf1	83	55.962	YMR080C	NAM7	87	55.962	Saccharomyces_cerevisiae
ENSHBUG00000008939	upf1	89	100.000	ENSSBOG00000023632	UPF1	83	100.000	Saimiri_boliviensis_boliviensis
ENSHBUG00000008939	upf1	89	100.000	ENSSHAG00000010499	UPF1	86	100.000	Sarcophilus_harrisii
ENSHBUG00000008939	upf1	95	100.000	ENSSFOG00015021095	upf1	86	100.000	Scleropages_formosus
ENSHBUG00000008939	upf1	95	100.000	ENSSMAG00000021018	-	86	100.000	Scophthalmus_maximus
ENSHBUG00000008939	upf1	95	100.000	ENSSMAG00000005055	upf1	85	100.000	Scophthalmus_maximus
ENSHBUG00000008939	upf1	95	100.000	ENSSDUG00000013320	upf1	86	100.000	Seriola_dumerili
ENSHBUG00000008939	upf1	95	100.000	ENSSDUG00000009629	-	86	100.000	Seriola_dumerili
ENSHBUG00000008939	upf1	95	100.000	ENSSLDG00000006878	-	86	100.000	Seriola_lalandi_dorsalis
ENSHBUG00000008939	upf1	95	100.000	ENSSLDG00000020868	upf1	86	100.000	Seriola_lalandi_dorsalis
ENSHBUG00000008939	upf1	95	97.436	ENSSPUG00000010538	UPF1	100	87.347	Sphenodon_punctatus
ENSHBUG00000008939	upf1	95	100.000	ENSSPAG00000011521	-	86	100.000	Stegastes_partitus
ENSHBUG00000008939	upf1	95	100.000	ENSSPAG00000000003	upf1	86	100.000	Stegastes_partitus
ENSHBUG00000008939	upf1	95	100.000	ENSSSCG00000039301	UPF1	87	100.000	Sus_scrofa
ENSHBUG00000008939	upf1	90	86.809	ENSTGUG00000001057	UPF1	100	90.976	Taeniopygia_guttata
ENSHBUG00000008939	upf1	95	97.436	ENSTRUG00000000150	upf1	87	97.436	Takifugu_rubripes
ENSHBUG00000008939	upf1	95	100.000	ENSTRUG00000005131	-	87	100.000	Takifugu_rubripes
ENSHBUG00000008939	upf1	95	100.000	ENSTTRG00000011544	UPF1	87	100.000	Tursiops_truncatus
ENSHBUG00000008939	upf1	95	100.000	ENSUAMG00000007093	UPF1	87	100.000	Ursus_americanus
ENSHBUG00000008939	upf1	90	100.000	ENSUMAG00000006652	UPF1	86	100.000	Ursus_maritimus
ENSHBUG00000008939	upf1	95	100.000	ENSVVUG00000007797	UPF1	87	100.000	Vulpes_vulpes
ENSHBUG00000008939	upf1	86	100.000	ENSXETG00000013602	upf1	81	100.000	Xenopus_tropicalis
ENSHBUG00000008939	upf1	88	100.000	ENSXCOG00000005764	-	86	100.000	Xiphophorus_couchianus
ENSHBUG00000008939	upf1	91	94.748	ENSXCOG00000015275	-	84	94.748	Xiphophorus_couchianus
ENSHBUG00000008939	upf1	96	94.858	ENSXMAG00000001703	-	88	94.858	Xiphophorus_maculatus
ENSHBUG00000008939	upf1	95	100.000	ENSXMAG00000002540	-	87	100.000	Xiphophorus_maculatus