EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000011325 (Gene tree)
Gene ID: 102314689
Gene Symbol: upf3a
Alias: -
Full Name: UPF3A%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 8266 bases
Position: chrJH425514.1:507473-515738
Accession: 102314689
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000027875	Smg4_UPF3	PF03467.15	1.4e-54	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000016489	-	5571	XM_005935814	ENSHBUP00000027875	463 (aa)	XP_005935876	UPI0003BD8AEE

Gene Model

Click here to download ENSHBUG00000011325's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000011325's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000011325	upf3a	88	57.176	ENSG00000169062	UPF3A	95	55.702	Homo_sapiens
ENSHBUG00000011325	upf3a	100	96.544	ENSAPOG00000013484	upf3a	100	96.544	Acanthochromis_polyacanthus
ENSHBUG00000011325	upf3a	98	93.697	ENSACIG00000020468	upf3a	99	93.697	Amphilophus_citrinellus
ENSHBUG00000011325	upf3a	60	62.373	ENSAOCG00000000706	upf3b	93	50.575	Amphiprion_ocellaris
ENSHBUG00000011325	upf3a	100	96.976	ENSAOCG00000020784	upf3a	100	96.976	Amphiprion_ocellaris
ENSHBUG00000011325	upf3a	100	96.976	ENSAPEG00000003519	upf3a	100	96.976	Amphiprion_percula
ENSHBUG00000011325	upf3a	99	94.372	ENSATEG00000005843	upf3a	100	94.168	Anabas_testudineus
ENSHBUG00000011325	upf3a	82	66.835	ENSACAG00000001540	UPF3A	99	64.354	Anolis_carolinensis
ENSHBUG00000011325	upf3a	83	45.542	ENSANAG00000025598	-	72	68.116	Aotus_nancymaae
ENSHBUG00000011325	upf3a	92	52.991	ENSANAG00000021713	UPF3A	99	52.917	Aotus_nancymaae
ENSHBUG00000011325	upf3a	100	96.050	ENSACLG00000026274	upf3a	100	96.050	Astatotilapia_calliptera
ENSHBUG00000011325	upf3a	98	83.480	ENSAMXG00000002608	upf3a	99	83.297	Astyanax_mexicanus
ENSHBUG00000011325	upf3a	93	54.923	ENSCJAG00000019102	UPF3A	95	55.142	Callithrix_jacchus
ENSHBUG00000011325	upf3a	82	51.338	ENSCJAG00000004975	UPF3B	77	70.303	Callithrix_jacchus
ENSHBUG00000011325	upf3a	84	46.024	ENSCAFG00020004074	UPF3B	69	67.442	Canis_lupus_dingo
ENSHBUG00000011325	upf3a	83	56.818	ENSCHIG00000008682	UPF3A	85	54.861	Capra_hircus
ENSHBUG00000011325	upf3a	82	51.942	ENSTSYG00000014690	UPF3B	76	65.882	Carlito_syrichta
ENSHBUG00000011325	upf3a	75	54.424	ENSTSYG00000001918	UPF3A	99	54.400	Carlito_syrichta
ENSHBUG00000011325	upf3a	81	39.740	ENSCCAG00000029813	-	52	60.127	Cebus_capucinus
ENSHBUG00000011325	upf3a	93	55.580	ENSCCAG00000018406	UPF3A	99	54.393	Cebus_capucinus
ENSHBUG00000011325	upf3a	93	56.696	ENSCATG00000029733	UPF3A	95	56.920	Cercocebus_atys
ENSHBUG00000011325	upf3a	93	56.304	ENSCSAG00000017388	UPF3A	95	56.957	Chlorocebus_sabaeus
ENSHBUG00000011325	upf3a	81	59.211	ENSCGRG00001017387	Upf3a	89	57.632	Cricetulus_griseus_chok1gshd
ENSHBUG00000011325	upf3a	81	59.211	ENSCGRG00000001468	Upf3a	89	57.632	Cricetulus_griseus_crigri
ENSHBUG00000011325	upf3a	99	90.693	ENSCSEG00000005106	upf3a	99	90.693	Cynoglossus_semilaevis
ENSHBUG00000011325	upf3a	99	88.337	ENSCVAG00000022333	upf3a	100	88.147	Cyprinodon_variegatus
ENSHBUG00000011325	upf3a	99	80.994	ENSDARG00000069297	upf3a	99	81.579	Danio_rerio
ENSHBUG00000011325	upf3a	81	60.902	ENSDNOG00000034391	UPF3A	90	60.902	Dasypus_novemcinctus
ENSHBUG00000011325	upf3a	92	52.586	ENSETEG00000010110	UPF3A	96	52.586	Echinops_telfairi
ENSHBUG00000011325	upf3a	82	48.139	ENSEASG00005012919	UPF3B	62	71.014	Equus_asinus_asinus
ENSHBUG00000011325	upf3a	88	58.372	ENSEASG00005021884	UPF3A	88	57.583	Equus_asinus_asinus
ENSHBUG00000011325	upf3a	82	48.139	ENSECAG00000016947	UPF3B	62	64.286	Equus_caballus
ENSHBUG00000011325	upf3a	98	84.165	ENSELUG00000011050	upf3a	99	83.983	Esox_lucius
ENSHBUG00000011325	upf3a	90	58.014	ENSFCAG00000014602	UPF3A	92	58.014	Felis_catus
ENSHBUG00000011325	upf3a	99	89.417	ENSGAFG00000021170	upf3a	100	89.224	Gambusia_affinis
ENSHBUG00000011325	upf3a	69	84.375	ENSGACG00000001972	upf3a	100	84.375	Gasterosteus_aculeatus
ENSHBUG00000011325	upf3a	51	67.886	ENSGACG00000017435	upf3b	60	71.951	Gasterosteus_aculeatus
ENSHBUG00000011325	upf3a	88	57.683	ENSGGOG00000015428	UPF3A	95	55.928	Gorilla_gorilla
ENSHBUG00000011325	upf3a	80	48.936	ENSGGOG00000041219	-	85	47.273	Gorilla_gorilla
ENSHBUG00000011325	upf3a	88	45.803	ENSGGOG00000043074	-	86	45.985	Gorilla_gorilla
ENSHBUG00000011325	upf3a	76	56.749	ENSHGLG00000001544	UPF3A	50	66.825	Heterocephalus_glaber_female
ENSHBUG00000011325	upf3a	76	56.749	ENSHGLG00100013244	UPF3A	50	66.825	Heterocephalus_glaber_male
ENSHBUG00000011325	upf3a	94	81.136	ENSHCOG00000013985	upf3a	94	81.591	Hippocampus_comes
ENSHBUG00000011325	upf3a	98	81.099	ENSIPUG00000023450	upf3a	99	80.921	Ictalurus_punctatus
ENSHBUG00000011325	upf3a	99	93.521	ENSKMAG00000004381	upf3a	100	93.319	Kryptolebias_marmoratus
ENSHBUG00000011325	upf3a	98	88.791	ENSLBEG00000021570	upf3a	100	88.840	Labrus_bergylta
ENSHBUG00000011325	upf3a	60	43.109	ENSLACG00000006645	UPF3A	66	87.500	Latimeria_chalumnae
ENSHBUG00000011325	upf3a	97	76.586	ENSLOCG00000002665	upf3a	98	76.586	Lepisosteus_oculatus
ENSHBUG00000011325	upf3a	93	55.830	ENSMFAG00000045016	UPF3A	95	55.605	Macaca_fascicularis
ENSHBUG00000011325	upf3a	87	58.537	ENSMMUG00000007449	UPF3A	95	57.175	Macaca_mulatta
ENSHBUG00000011325	upf3a	85	59.750	ENSMNEG00000036402	UPF3A	83	59.750	Macaca_nemestrina
ENSHBUG00000011325	upf3a	85	59.250	ENSMLEG00000014726	UPF3A	94	59.250	Mandrillus_leucophaeus
ENSHBUG00000011325	upf3a	99	92.050	ENSMAMG00000018364	upf3a	100	91.858	Mastacembelus_armatus
ENSHBUG00000011325	upf3a	100	96.050	ENSMZEG00005021571	upf3a	100	96.050	Maylandia_zebra
ENSHBUG00000011325	upf3a	85	64.059	ENSMGAG00000014837	UPF3A	99	64.059	Meleagris_gallopavo
ENSHBUG00000011325	upf3a	58	67.870	ENSMOCG00000000550	Upf3a	57	69.802	Microtus_ochrogaster
ENSHBUG00000011325	upf3a	99	88.912	ENSMMOG00000019751	upf3a	99	88.912	Mola_mola
ENSHBUG00000011325	upf3a	83	66.917	ENSMODG00000003159	UPF3A	98	65.485	Monodelphis_domestica
ENSHBUG00000011325	upf3a	81	61.097	MGP_PahariEiJ_G0021311	Upf3a	87	59.574	Mus_pahari
ENSHBUG00000011325	upf3a	91	55.677	ENSMPUG00000009139	UPF3A	94	55.677	Mustela_putorius_furo
ENSHBUG00000011325	upf3a	80	60.614	ENSMLUG00000015905	UPF3A	92	60.614	Myotis_lucifugus
ENSHBUG00000011325	upf3a	87	53.901	ENSNGAG00000019314	Upf3a	54	63.274	Nannospalax_galili
ENSHBUG00000011325	upf3a	100	99.352	ENSNBRG00000000828	upf3a	100	99.352	Neolamprologus_brichardi
ENSHBUG00000011325	upf3a	88	57.311	ENSNLEG00000007563	UPF3A	90	57.783	Nomascus_leucogenys
ENSHBUG00000011325	upf3a	100	98.069	ENSONIG00000006817	upf3a	100	98.069	Oreochromis_niloticus
ENSHBUG00000011325	upf3a	76	56.793	ENSOANG00000006985	-	95	57.337	Ornithorhynchus_anatinus
ENSHBUG00000011325	upf3a	99	86.910	ENSORLG00000010911	upf3a	100	86.724	Oryzias_latipes
ENSHBUG00000011325	upf3a	99	86.147	ENSORLG00020014317	upf3a	100	85.961	Oryzias_latipes_hni
ENSHBUG00000011325	upf3a	82	43.447	ENSORLG00020003758	upf3b	51	70.270	Oryzias_latipes_hni
ENSHBUG00000011325	upf3a	99	87.013	ENSORLG00015017339	upf3a	58	86.825	Oryzias_latipes_hsok
ENSHBUG00000011325	upf3a	99	89.177	ENSOMEG00000014425	upf3a	100	88.985	Oryzias_melastigma
ENSHBUG00000011325	upf3a	73	61.429	ENSOGAG00000004788	UPF3A	84	61.605	Otolemur_garnettii
ENSHBUG00000011325	upf3a	84	58.313	ENSOARG00000009004	UPF3A	84	58.313	Ovis_aries
ENSHBUG00000011325	upf3a	88	56.481	ENSPPAG00000042267	UPF3A	95	55.482	Pan_paniscus
ENSHBUG00000011325	upf3a	90	57.788	ENSPPRG00000025062	UPF3A	92	57.788	Panthera_pardus
ENSHBUG00000011325	upf3a	80	48.571	ENSPTRG00000041187	-	85	45.195	Pan_troglodytes
ENSHBUG00000011325	upf3a	88	56.481	ENSPTRG00000006073	UPF3A	95	55.482	Pan_troglodytes
ENSHBUG00000011325	upf3a	80	44.935	ENSPTRG00000051640	-	85	43.117	Pan_troglodytes
ENSHBUG00000011325	upf3a	93	57.271	ENSPANG00000004346	UPF3A	95	57.271	Papio_anubis
ENSHBUG00000011325	upf3a	94	49.364	ENSPKIG00000019226	upf3b	86	68.794	Paramormyrops_kingsleyae
ENSHBUG00000011325	upf3a	97	71.369	ENSPKIG00000004422	upf3a	100	70.612	Paramormyrops_kingsleyae
ENSHBUG00000011325	upf3a	83	67.677	ENSPSIG00000007468	UPF3A	96	67.677	Pelodiscus_sinensis
ENSHBUG00000011325	upf3a	99	83.471	ENSPMGG00000012696	upf3a	100	83.299	Periophthalmus_magnuspinnatus
ENSHBUG00000011325	upf3a	73	70.485	ENSPCIG00000019590	-	90	69.903	Phascolarctos_cinereus
ENSHBUG00000011325	upf3a	99	90.043	ENSPFOG00000013222	upf3a	100	89.849	Poecilia_formosa
ENSHBUG00000011325	upf3a	98	88.840	ENSPLAG00000011960	upf3a	100	88.840	Poecilia_latipinna
ENSHBUG00000011325	upf3a	99	85.892	ENSPMEG00000000836	upf3a	100	85.714	Poecilia_mexicana
ENSHBUG00000011325	upf3a	88	57.176	ENSPPYG00000005536	UPF3A	90	57.407	Pongo_abelii
ENSHBUG00000011325	upf3a	85	45.283	ENSPCOG00000021960	UPF3B	51	71.341	Propithecus_coquereli
ENSHBUG00000011325	upf3a	82	58.040	ENSPVAG00000005656	UPF3A	82	54.988	Pteropus_vampyrus
ENSHBUG00000011325	upf3a	100	96.050	ENSPNYG00000011289	upf3a	100	96.050	Pundamilia_nyererei
ENSHBUG00000011325	upf3a	83	51.069	ENSPNAG00000021528	upf3b	58	70.690	Pygocentrus_nattereri
ENSHBUG00000011325	upf3a	99	82.251	ENSPNAG00000019532	upf3a	100	82.251	Pygocentrus_nattereri
ENSHBUG00000011325	upf3a	87	58.394	ENSRBIG00000034007	UPF3A	93	58.072	Rhinopithecus_bieti
ENSHBUG00000011325	upf3a	85	59.398	ENSRROG00000012212	UPF3A	85	59.398	Rhinopithecus_roxellana
ENSHBUG00000011325	upf3a	77	55.263	ENSSBOG00000029989	UPF3A	95	49.244	Saimiri_boliviensis_boliviensis
ENSHBUG00000011325	upf3a	82	51.463	ENSSBOG00000019740	UPF3B	78	71.779	Saimiri_boliviensis_boliviensis
ENSHBUG00000011325	upf3a	83	67.172	ENSSHAG00000009895	UPF3A	94	68.010	Sarcophilus_harrisii
ENSHBUG00000011325	upf3a	98	72.527	ENSSFOG00015021851	upf3a	99	71.491	Scleropages_formosus
ENSHBUG00000011325	upf3a	52	68.526	ENSSMAG00000012913	upf3b	54	73.780	Scophthalmus_maximus
ENSHBUG00000011325	upf3a	99	84.898	ENSSMAG00000003858	upf3a	100	85.947	Scophthalmus_maximus
ENSHBUG00000011325	upf3a	100	93.528	ENSSDUG00000009680	upf3a	100	93.528	Seriola_dumerili
ENSHBUG00000011325	upf3a	100	96.760	ENSSLDG00000009700	upf3a	100	96.760	Seriola_lalandi_dorsalis
ENSHBUG00000011325	upf3a	100	95.464	ENSSPAG00000007938	upf3a	100	95.464	Stegastes_partitus
ENSHBUG00000011325	upf3a	82	68.354	ENSTGUG00000009493	UPF3A	99	68.354	Taeniopygia_guttata
ENSHBUG00000011325	upf3a	98	87.665	ENSTRUG00000012730	upf3a	99	87.473	Takifugu_rubripes
ENSHBUG00000011325	upf3a	83	77.665	ENSTNIG00000014973	upf3a	100	77.157	Tetraodon_nigroviridis
ENSHBUG00000011325	upf3a	72	55.587	ENSTTRG00000015414	UPF3A	73	55.587	Tursiops_truncatus
ENSHBUG00000011325	upf3a	84	45.803	ENSUAMG00000024565	UPF3B	66	65.000	Ursus_americanus
ENSHBUG00000011325	upf3a	82	46.517	ENSVVUG00000011594	UPF3B	83	67.416	Vulpes_vulpes
ENSHBUG00000011325	upf3a	83	46.535	ENSXETG00000007440	upf3b	71	71.951	Xenopus_tropicalis
ENSHBUG00000011325	upf3a	82	59.536	ENSXETG00000002572	upf3a	91	59.536	Xenopus_tropicalis
ENSHBUG00000011325	upf3a	99	90.065	ENSXMAG00000013452	upf3a	100	89.871	Xiphophorus_maculatus