EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHBUG00000013773 (Gene tree)
Gene ID
102299938
Gene Symbol
lsm5
Alias
zgc:171959
Full Name
LSM5 homolog%2C U6 small nuclear RNA and mRNA degradation associated
Gene Type
protein_coding
Species
Haplochromis_burtoni
Status
putative
Strand
Plus strand
Length
2960 bases
Position
chrJH425646.1:526906-529865
Accession
102299938
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHBUP00000012088LSMPF01423.224.5e-2011
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHBUT00000019432-1193XM_005941912ENSHBUP0000001208888 (aa)XP_005941974UPI00022AEFCC
Gene Model
Click here to download ENSHBUG00000013773's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000013773's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHBUG00000013773lsm58534.667ENSHBUG00000022399lsm37434.667
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHBUG00000013773lsm59995.402ENSG00000106355LSM510096.774Homo_sapiens
ENSHBUG00000013773lsm58996.154ENSAPOG00000011743LSM5100100.000Acanthochromis_polyacanthus
ENSHBUG00000013773lsm59997.701ENSAPOG00000020779LSM59697.701Acanthochromis_polyacanthus
ENSHBUG00000013773lsm59995.402ENSAMEG00000006700LSM59695.402Ailuropoda_melanoleuca
ENSHBUG00000013773lsm510062.500ENSACIG00000019185lsm510062.500Amphilophus_citrinellus
ENSHBUG00000013773lsm59997.701ENSAOCG00000001636lsm59697.701Amphiprion_ocellaris
ENSHBUG00000013773lsm59997.701ENSAPEG00000008151lsm59697.701Amphiprion_percula
ENSHBUG00000013773lsm570100.000ENSAPEG00000008201lsm5100100.000Amphiprion_percula
ENSHBUG00000013773lsm58898.701ENSATEG00000020470lsm55798.701Anabas_testudineus
ENSHBUG00000013773lsm58497.297ENSAPLG00000008171LSM510097.297Anas_platyrhynchos
ENSHBUG00000013773lsm55994.231ENSACAG00000009530LSM58794.231Anolis_carolinensis
ENSHBUG00000013773lsm59996.552ENSANAG00000034409-9696.552Aotus_nancymaae
ENSHBUG00000013773lsm59973.563ENSANAG00000037758-9573.563Aotus_nancymaae
ENSHBUG00000013773lsm59993.103ENSANAG00000024192-9193.103Aotus_nancymaae
ENSHBUG00000013773lsm5100100.000ENSACLG00000012891lsm5100100.000Astatotilapia_calliptera
ENSHBUG00000013773lsm59983.333ENSAMXG00000035543lsm59683.333Astyanax_mexicanus
ENSHBUG00000013773lsm59995.402ENSBTAG00000002332LSM59695.402Bos_taurus
ENSHBUG00000013773lsm55077.273ENSBTAG00000052014-5877.273Bos_taurus
ENSHBUG00000013773lsm59973.563WBGene00003079lsm-59673.563Caenorhabditis_elegans
ENSHBUG00000013773lsm59983.908ENSCJAG00000005678-9783.908Callithrix_jacchus
ENSHBUG00000013773lsm59995.402ENSCJAG00000047379LSM57585.417Callithrix_jacchus
ENSHBUG00000013773lsm55286.957ENSCAFG00000030781-5386.957Canis_familiaris
ENSHBUG00000013773lsm59994.253ENSCAFG00000019261-9694.253Canis_familiaris
ENSHBUG00000013773lsm59995.402ENSCAFG00020004946LSM59695.402Canis_lupus_dingo
ENSHBUG00000013773lsm59995.402ENSCHIG00000024539LSM59695.402Capra_hircus
ENSHBUG00000013773lsm58074.286ENSCHIG00000021428-9171.429Capra_hircus
ENSHBUG00000013773lsm59993.103ENSCHIG00000004079-9693.103Capra_hircus
ENSHBUG00000013773lsm59995.402ENSTSYG00000006449-9695.402Carlito_syrichta
ENSHBUG00000013773lsm59982.759ENSTSYG00000028728-9582.759Carlito_syrichta
ENSHBUG00000013773lsm59968.966ENSTSYG00000036637-9568.966Carlito_syrichta
ENSHBUG00000013773lsm59977.011ENSTSYG00000026530-8777.011Carlito_syrichta
ENSHBUG00000013773lsm58590.667ENSCAPG00000006980LSM510090.667Cavia_aperea
ENSHBUG00000013773lsm59995.402ENSCPOG00000036386LSM59695.402Cavia_porcellus
ENSHBUG00000013773lsm59993.103ENSCCAG00000032123-9693.103Cebus_capucinus
ENSHBUG00000013773lsm59994.253ENSCCAG00000000821-9694.253Cebus_capucinus
ENSHBUG00000013773lsm59995.402ENSCCAG00000037808-9695.402Cebus_capucinus
ENSHBUG00000013773lsm59975.862ENSCCAG00000032792-9575.862Cebus_capucinus
ENSHBUG00000013773lsm59965.517ENSCCAG00000037334-9565.517Cebus_capucinus
ENSHBUG00000013773lsm59995.402ENSCATG00000040218LSM510096.774Cercocebus_atys
ENSHBUG00000013773lsm59983.908ENSCATG00000014790-9092.308Cercocebus_atys
ENSHBUG00000013773lsm59995.402ENSCLAG00000000202LSM59695.402Chinchilla_lanigera
ENSHBUG00000013773lsm59882.558ENSCLAG00000005062-8582.558Chinchilla_lanigera
ENSHBUG00000013773lsm58195.775ENSCHOG00000005335LSM59395.775Choloepus_hoffmanni
ENSHBUG00000013773lsm59995.402ENSCPBG00000013685LSM59695.402Chrysemys_picta_bellii
ENSHBUG00000013773lsm59986.207ENSCING00000020625-9886.207Ciona_intestinalis
ENSHBUG00000013773lsm59887.209ENSCSAVG00000001439-9887.209Ciona_savignyi
ENSHBUG00000013773lsm59995.402ENSCANG00000039909LSM510096.774Colobus_angolensis_palliatus
ENSHBUG00000013773lsm59995.402ENSCGRG00001015461Lsm59695.402Cricetulus_griseus_chok1gshd
ENSHBUG00000013773lsm58597.333ENSCGRG00000007677Lsm510097.333Cricetulus_griseus_crigri
ENSHBUG00000013773lsm59959.770ENSCSEG00000015286lsm59359.770Cynoglossus_semilaevis
ENSHBUG00000013773lsm598100.000ENSCVAG00000004262lsm595100.000Cyprinodon_variegatus
ENSHBUG00000013773lsm510096.591ENSDARG00000071573lsm510098.387Danio_rerio
ENSHBUG00000013773lsm59995.402ENSDNOG00000034958LSM59695.402Dasypus_novemcinctus
ENSHBUG00000013773lsm59484.337ENSDNOG00000049495-9184.337Dasypus_novemcinctus
ENSHBUG00000013773lsm59995.402ENSDORG00000009422Lsm59695.402Dipodomys_ordii
ENSHBUG00000013773lsm59582.143FBgn0035675CG66109282.143Drosophila_melanogaster
ENSHBUG00000013773lsm510076.136ENSETEG00000010651-9776.136Echinops_telfairi
ENSHBUG00000013773lsm58478.378ENSETEG00000016074-9878.378Echinops_telfairi
ENSHBUG00000013773lsm59973.563ENSETEG00000001469-9573.563Echinops_telfairi
ENSHBUG00000013773lsm59763.529ENSETEG00000000777-9463.529Echinops_telfairi
ENSHBUG00000013773lsm59995.402ENSETEG00000018068LSM59695.402Echinops_telfairi
ENSHBUG00000013773lsm510092.308ENSEBUG00000008540lsm510092.308Eptatretus_burgeri
ENSHBUG00000013773lsm59995.402ENSEASG00005003500LSM59695.402Equus_asinus_asinus
ENSHBUG00000013773lsm59980.460ENSECAG00000018445LSM59580.460Equus_caballus
ENSHBUG00000013773lsm56592.982ENSEEUG00000004102LSM59592.982Erinaceus_europaeus
ENSHBUG00000013773lsm59898.837ENSELUG00000007792lsm59598.837Esox_lucius
ENSHBUG00000013773lsm59995.402ENSFCAG00000000230LSM59695.402Felis_catus
ENSHBUG00000013773lsm58697.368ENSFALG00000001892LSM59297.368Ficedula_albicollis
ENSHBUG00000013773lsm59367.073ENSFDAG00000008685-9767.073Fukomys_damarensis
ENSHBUG00000013773lsm59995.402ENSFDAG00000008767LSM59695.402Fukomys_damarensis
ENSHBUG00000013773lsm510079.775ENSFHEG00000004011lsm59779.775Fundulus_heteroclitus
ENSHBUG00000013773lsm597100.000ENSGMOG00000018235lsm594100.000Gadus_morhua
ENSHBUG00000013773lsm59995.402ENSGALG00000041625LSM59695.402Gallus_gallus
ENSHBUG00000013773lsm570100.000ENSGAFG00000016824lsm5100100.000Gambusia_affinis
ENSHBUG00000013773lsm59898.837ENSGACG00000005528lsm59598.837Gasterosteus_aculeatus
ENSHBUG00000013773lsm59995.402ENSGAGG00000015593LSM59695.402Gopherus_agassizii
ENSHBUG00000013773lsm59995.402ENSGGOG00000043469LSM59695.402Gorilla_gorilla
ENSHBUG00000013773lsm59995.402ENSHGLG00000011765LSM59695.402Heterocephalus_glaber_female
ENSHBUG00000013773lsm59991.954ENSHGLG00100015610LSM59691.954Heterocephalus_glaber_male
ENSHBUG00000013773lsm59959.770ENSHCOG00000008288lsm59359.770Hippocampus_comes
ENSHBUG00000013773lsm59897.674ENSIPUG00000021095LSM59597.674Ictalurus_punctatus
ENSHBUG00000013773lsm59978.652ENSSTOG00000033886-10078.652Ictidomys_tridecemlineatus
ENSHBUG00000013773lsm59995.402ENSSTOG00000012662LSM59695.402Ictidomys_tridecemlineatus
ENSHBUG00000013773lsm59966.667ENSJJAG00000016144-8766.667Jaculus_jaculus
ENSHBUG00000013773lsm58590.667ENSJJAG00000004475-9590.667Jaculus_jaculus
ENSHBUG00000013773lsm59995.402ENSJJAG00000012145-9695.402Jaculus_jaculus
ENSHBUG00000013773lsm59996.552ENSKMAG00000021861lsm59696.552Kryptolebias_marmoratus
ENSHBUG00000013773lsm58898.701ENSLBEG00000009235LSM56198.701Labrus_bergylta
ENSHBUG00000013773lsm55886.275ENSLBEG00000017379lsm58486.275Labrus_bergylta
ENSHBUG00000013773lsm59996.552ENSLACG00000022448LSM59696.552Latimeria_chalumnae
ENSHBUG00000013773lsm59898.837ENSLOCG00000012903lsm59598.837Lepisosteus_oculatus
ENSHBUG00000013773lsm59995.402ENSLAFG00000029579LSM59695.402Loxodonta_africana
ENSHBUG00000013773lsm59971.264ENSLAFG00000027938-9571.264Loxodonta_africana
ENSHBUG00000013773lsm59993.103ENSMFAG00000030152-9693.103Macaca_fascicularis
ENSHBUG00000013773lsm55191.111ENSMFAG00000031187-7691.111Macaca_fascicularis
ENSHBUG00000013773lsm59995.402ENSMFAG00000038508LSM59695.402Macaca_fascicularis
ENSHBUG00000013773lsm59985.057ENSMMUG00000039822-9685.057Macaca_mulatta
ENSHBUG00000013773lsm55585.417ENSMMUG00000045129-7585.417Macaca_mulatta
ENSHBUG00000013773lsm59993.103ENSMMUG00000030131-9693.103Macaca_mulatta
ENSHBUG00000013773lsm59993.103ENSMNEG00000037935-9693.103Macaca_nemestrina
ENSHBUG00000013773lsm59995.402ENSMNEG00000015331LSM510096.774Macaca_nemestrina
ENSHBUG00000013773lsm59983.908ENSMLEG00000034037-9883.908Mandrillus_leucophaeus
ENSHBUG00000013773lsm59995.402ENSMLEG00000024945LSM59695.402Mandrillus_leucophaeus
ENSHBUG00000013773lsm59991.954ENSMAMG00000012869lsm59691.954Mastacembelus_armatus
ENSHBUG00000013773lsm5100100.000ENSMZEG00005019554lsm5100100.000Maylandia_zebra
ENSHBUG00000013773lsm59995.402ENSMGAG00000012117LSM59695.402Meleagris_gallopavo
ENSHBUG00000013773lsm59995.402ENSMAUG00000012222Lsm59695.402Mesocricetus_auratus
ENSHBUG00000013773lsm59994.253ENSMAUG00000008132-9694.253Mesocricetus_auratus
ENSHBUG00000013773lsm59973.563ENSMICG00000033928-9273.563Microcebus_murinus
ENSHBUG00000013773lsm59995.402ENSMICG00000005353LSM59695.402Microcebus_murinus
ENSHBUG00000013773lsm59995.402ENSMOCG00000012018Lsm59695.402Microtus_ochrogaster
ENSHBUG00000013773lsm586100.000ENSMMOG00000004026lsm587100.000Mola_mola
ENSHBUG00000013773lsm57096.774ENSMODG00000013274-10096.774Monodelphis_domestica
ENSHBUG00000013773lsm57093.548ENSMALG00000010343lsm510093.548Monopterus_albus
ENSHBUG00000013773lsm59995.402MGP_CAROLIEiJ_G0028421Lsm510092.857Mus_caroli
ENSHBUG00000013773lsm59995.402ENSMUSG00000091625Lsm510092.857Mus_musculus
ENSHBUG00000013773lsm59995.402MGP_PahariEiJ_G0022171Lsm510092.857Mus_pahari
ENSHBUG00000013773lsm59995.402MGP_SPRETEiJ_G0029423Lsm510092.857Mus_spretus
ENSHBUG00000013773lsm59995.402ENSMLUG00000017028LSM59695.402Myotis_lucifugus
ENSHBUG00000013773lsm59984.270ENSNGAG00000017707-9584.270Nannospalax_galili
ENSHBUG00000013773lsm59995.402ENSNGAG00000024142Lsm59695.402Nannospalax_galili
ENSHBUG00000013773lsm59974.713ENSNGAG00000022569-9374.713Nannospalax_galili
ENSHBUG00000013773lsm55295.652ENSNBRG00000009964LSM59895.652Neolamprologus_brichardi
ENSHBUG00000013773lsm56598.246ENSNBRG00000011386lsm57698.246Neolamprologus_brichardi
ENSHBUG00000013773lsm59995.402ENSNLEG00000015268LSM59695.402Nomascus_leucogenys
ENSHBUG00000013773lsm58597.333ENSOPRG00000002443LSM510097.333Ochotona_princeps
ENSHBUG00000013773lsm59995.402ENSODEG00000008258-9695.402Octodon_degus
ENSHBUG00000013773lsm59995.402ENSODEG00000019072-9695.402Octodon_degus
ENSHBUG00000013773lsm58560.000ENSOANG00000014540-10060.000Ornithorhynchus_anatinus
ENSHBUG00000013773lsm59995.402ENSOCUG00000029043LSM59695.402Oryctolagus_cuniculus
ENSHBUG00000013773lsm59897.674ENSORLG00000027725lsm55597.674Oryzias_latipes
ENSHBUG00000013773lsm59492.771ENSORLG00020003019lsm59486.667Oryzias_latipes_hni
ENSHBUG00000013773lsm59996.552ENSORLG00015003338lsm59696.552Oryzias_latipes_hsok
ENSHBUG00000013773lsm510094.505ENSOMEG00000001078lsm510094.505Oryzias_melastigma
ENSHBUG00000013773lsm59995.402ENSOGAG00000013892LSM59695.402Otolemur_garnettii
ENSHBUG00000013773lsm59995.402ENSOARG00000006944LSM59695.402Ovis_aries
ENSHBUG00000013773lsm59995.402ENSPPAG00000003697-9695.402Pan_paniscus
ENSHBUG00000013773lsm59995.402ENSPPRG00000002550LSM59695.402Panthera_pardus
ENSHBUG00000013773lsm59995.402ENSPTIG00000015604LSM59695.402Panthera_tigris_altaica
ENSHBUG00000013773lsm59995.402ENSPTRG00000019057LSM59695.402Pan_troglodytes
ENSHBUG00000013773lsm59978.161ENSPTRG00000049488-9580.460Pan_troglodytes
ENSHBUG00000013773lsm59991.954ENSPANG00000033477-9691.954Papio_anubis
ENSHBUG00000013773lsm59985.057ENSPANG00000032538-9685.057Papio_anubis
ENSHBUG00000013773lsm59995.402ENSPANG00000032179-9695.402Papio_anubis
ENSHBUG00000013773lsm59997.701ENSPKIG00000011910lsm59697.701Paramormyrops_kingsleyae
ENSHBUG00000013773lsm58497.297ENSPSIG00000014796LSM510097.297Pelodiscus_sinensis
ENSHBUG00000013773lsm570100.000ENSPMGG00000011699lsm5100100.000Periophthalmus_magnuspinnatus
ENSHBUG00000013773lsm59967.816ENSPEMG00000022375-9567.816Peromyscus_maniculatus_bairdii
ENSHBUG00000013773lsm598100.000ENSPFOG00000001433lsm595100.000Poecilia_formosa
ENSHBUG00000013773lsm598100.000ENSPLAG00000009665lsm595100.000Poecilia_latipinna
ENSHBUG00000013773lsm598100.000ENSPMEG00000022265lsm595100.000Poecilia_mexicana
ENSHBUG00000013773lsm570100.000ENSPREG00000022452lsm5100100.000Poecilia_reticulata
ENSHBUG00000013773lsm59991.954ENSPPYG00000017661LSM59691.954Pongo_abelii
ENSHBUG00000013773lsm58896.104ENSPCAG00000013740LSM59596.104Procavia_capensis
ENSHBUG00000013773lsm59995.402ENSPVAG00000009786LSM59695.402Pteropus_vampyrus
ENSHBUG00000013773lsm5100100.000ENSPNYG00000022236lsm5100100.000Pundamilia_nyererei
ENSHBUG00000013773lsm59897.674ENSPNAG00000001887lsm59597.674Pygocentrus_nattereri
ENSHBUG00000013773lsm59893.103ENSRNOG00000027305AABR07065089.19593.103Rattus_norvegicus
ENSHBUG00000013773lsm59995.402ENSRNOG00000042126Lsm59695.402Rattus_norvegicus
ENSHBUG00000013773lsm59994.253ENSRBIG00000024431-9694.253Rhinopithecus_bieti
ENSHBUG00000013773lsm59995.402ENSRBIG00000027803-10096.774Rhinopithecus_bieti
ENSHBUG00000013773lsm59995.402ENSRBIG00000030714-9695.402Rhinopithecus_bieti
ENSHBUG00000013773lsm59995.402ENSRBIG00000030340-9695.402Rhinopithecus_bieti
ENSHBUG00000013773lsm59995.402ENSRROG00000004655-9695.402Rhinopithecus_roxellana
ENSHBUG00000013773lsm59995.402ENSRROG00000023884-9695.402Rhinopithecus_roxellana
ENSHBUG00000013773lsm59995.402ENSRROG00000042782-10096.774Rhinopithecus_roxellana
ENSHBUG00000013773lsm58848.780YER146W-8848.780Saccharomyces_cerevisiae
ENSHBUG00000013773lsm59994.253ENSSBOG00000019124-9694.253Saimiri_boliviensis_boliviensis
ENSHBUG00000013773lsm59995.402ENSSBOG00000012312LSM59695.402Saimiri_boliviensis_boliviensis
ENSHBUG00000013773lsm59972.414ENSSBOG00000034794-9572.414Saimiri_boliviensis_boliviensis
ENSHBUG00000013773lsm59997.701ENSSFOG00015010099lsm59697.701Scleropages_formosus
ENSHBUG00000013773lsm59860.465ENSSMAG00000007895lsm59260.465Scophthalmus_maximus
ENSHBUG00000013773lsm570100.000ENSSDUG00000010762lsm5100100.000Seriola_dumerili
ENSHBUG00000013773lsm59998.851ENSSLDG00000025242lsm59698.851Seriola_lalandi_dorsalis
ENSHBUG00000013773lsm58976.923ENSSLDG00000008014-9376.923Seriola_lalandi_dorsalis
ENSHBUG00000013773lsm59966.667ENSSARG00000003330LSM59666.667Sorex_araneus
ENSHBUG00000013773lsm59994.253ENSSPUG00000002690LSM510095.161Sphenodon_punctatus
ENSHBUG00000013773lsm59959.770ENSSPAG00000005435lsm59359.770Stegastes_partitus
ENSHBUG00000013773lsm59995.402ENSSSCG00000026064-9695.402Sus_scrofa
ENSHBUG00000013773lsm57484.615ENSSSCG00000029661-9084.615Sus_scrofa
ENSHBUG00000013773lsm59994.253ENSTGUG00000017539LSM59694.253Taeniopygia_guttata
ENSHBUG00000013773lsm59089.286ENSTRUG00000017749lsm56589.286Takifugu_rubripes
ENSHBUG00000013773lsm510097.727ENSTNIG00000008695lsm510097.727Tetraodon_nigroviridis
ENSHBUG00000013773lsm59995.402ENSTBEG00000004876LSM59695.402Tupaia_belangeri
ENSHBUG00000013773lsm59995.402ENSTTRG00000004237LSM59695.402Tursiops_truncatus
ENSHBUG00000013773lsm55585.417ENSUAMG00000009786LSM56285.417Ursus_americanus
ENSHBUG00000013773lsm59994.253ENSUMAG00000002625LSM56394.253Ursus_maritimus
ENSHBUG00000013773lsm59995.402ENSVPAG00000009985LSM59695.402Vicugna_pacos
ENSHBUG00000013773lsm59995.402ENSVVUG00000021311LSM59695.402Vulpes_vulpes
ENSHBUG00000013773lsm59092.683ENSXETG00000026465lsm510092.683Xenopus_tropicalis
ENSHBUG00000013773lsm570100.000ENSXCOG00000015348lsm5100100.000Xiphophorus_couchianus
ENSHBUG00000013773lsm598100.000ENSXMAG00000029988lsm595100.000Xiphophorus_maculatus

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