EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000013987 (Gene tree)
Gene ID: 102310114
Gene Symbol: smn1
Alias: fa12d01|smn|wu:fa12d01
Full Name: survival motor neuron protein 1-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 6403 bases
Position: chrJH425372.1:127552-133954
Accession: 102310114
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000029515	SMN	PF06003.12	1.2e-114	1	1
ENSHBUP00000012282	SMN	PF06003.12	4.5e-114	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000019675	-	972	-	ENSHBUP00000012282	290 (aa)	-	-
ENSHBUT00000019687	-	939	XM_005922617	ENSHBUP00000029515	279 (aa)	XP_005922679	UPI0003BD2675

Gene Model

Click here to download ENSHBUG00000013987's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000013987's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000013987	smn1	94	52.809	ENSG00000205571	SMN2	92	54.615	Homo_sapiens
ENSHBUG00000013987	smn1	94	52.809	ENSG00000172062	SMN1	92	54.615	Homo_sapiens
ENSHBUG00000013987	smn1	100	82.686	ENSAPOG00000011324	smn1	100	82.686	Acanthochromis_polyacanthus
ENSHBUG00000013987	smn1	94	55.273	ENSAMEG00000003316	-	89	50.903	Ailuropoda_melanoleuca
ENSHBUG00000013987	smn1	61	85.799	ENSACIG00000007598	smn1	94	86.391	Amphilophus_citrinellus
ENSHBUG00000013987	smn1	93	85.115	ENSACIG00000019772	-	99	85.115	Amphilophus_citrinellus
ENSHBUG00000013987	smn1	100	82.686	ENSAOCG00000024444	smn1	100	83.039	Amphiprion_ocellaris
ENSHBUG00000013987	smn1	100	83.039	ENSAPEG00000016504	smn1	100	83.392	Amphiprion_percula
ENSHBUG00000013987	smn1	95	84.074	ENSATEG00000002182	smn1	82	84.074	Anabas_testudineus
ENSHBUG00000013987	smn1	69	48.259	ENSAPLG00000010912	-	96	48.223	Anas_platyrhynchos
ENSHBUG00000013987	smn1	98	53.381	ENSACAG00000010017	-	96	53.025	Anolis_carolinensis
ENSHBUG00000013987	smn1	96	52.759	ENSANAG00000032133	-	95	52.143	Aotus_nancymaae
ENSHBUG00000013987	smn1	100	98.276	ENSACLG00000007308	smn1	100	98.276	Astatotilapia_calliptera
ENSHBUG00000013987	smn1	100	65.000	ENSAMXG00000013884	smn1	100	66.786	Astyanax_mexicanus
ENSHBUG00000013987	smn1	94	53.430	ENSBTAG00000005743	SMN2	93	49.438	Bos_taurus
ENSHBUG00000013987	smn1	94	54.307	ENSCJAG00000016290	-	91	56.134	Callithrix_jacchus
ENSHBUG00000013987	smn1	94	53.597	ENSCAFG00000007812	SMN	92	51.661	Canis_familiaris
ENSHBUG00000013987	smn1	94	53.597	ENSCAFG00020019229	-	86	51.661	Canis_lupus_dingo
ENSHBUG00000013987	smn1	94	54.839	ENSCHIG00000015559	-	91	51.111	Capra_hircus
ENSHBUG00000013987	smn1	94	55.056	ENSTSYG00000012058	-	93	52.434	Carlito_syrichta
ENSHBUG00000013987	smn1	77	48.889	ENSCAPG00000011021	-	88	47.030	Cavia_aperea
ENSHBUG00000013987	smn1	94	52.399	ENSCPOG00000036973	-	91	50.185	Cavia_porcellus
ENSHBUG00000013987	smn1	94	52.536	ENSCPOG00000012328	-	93	51.773	Cavia_porcellus
ENSHBUG00000013987	smn1	94	51.685	ENSCCAG00000018127	-	91	52.060	Cebus_capucinus
ENSHBUG00000013987	smn1	94	55.056	ENSCATG00000037002	-	92	54.615	Cercocebus_atys
ENSHBUG00000013987	smn1	94	51.648	ENSCLAG00000000284	-	92	50.352	Chinchilla_lanigera
ENSHBUG00000013987	smn1	94	55.185	ENSCSAG00000015688	-	91	54.676	Chlorocebus_sabaeus
ENSHBUG00000013987	smn1	62	83.333	ENSCHOG00000007346	-	100	49.421	Choloepus_hoffmanni
ENSHBUG00000013987	smn1	96	55.556	ENSCPBG00000010968	-	99	51.661	Chrysemys_picta_bellii
ENSHBUG00000013987	smn1	94	51.128	ENSCANG00000033324	-	94	49.129	Colobus_angolensis_palliatus
ENSHBUG00000013987	smn1	94	55.556	ENSCANG00000038242	-	93	53.640	Colobus_angolensis_palliatus
ENSHBUG00000013987	smn1	94	39.623	ENSCGRG00001016998	-	91	38.148	Cricetulus_griseus_chok1gshd
ENSHBUG00000013987	smn1	94	53.759	ENSCGRG00001017959	-	92	50.562	Cricetulus_griseus_chok1gshd
ENSHBUG00000013987	smn1	94	53.759	ENSCGRG00000007698	Smn1	92	50.562	Cricetulus_griseus_crigri
ENSHBUG00000013987	smn1	97	67.133	ENSCSEG00000015227	smn1	100	65.263	Cynoglossus_semilaevis
ENSHBUG00000013987	smn1	100	76.761	ENSCVAG00000007498	smn1	100	78.873	Cyprinodon_variegatus
ENSHBUG00000013987	smn1	100	64.184	ENSDARG00000018494	smn1	100	61.268	Danio_rerio
ENSHBUG00000013987	smn1	82	50.622	ENSDNOG00000007283	-	97	45.923	Dasypus_novemcinctus
ENSHBUG00000013987	smn1	51	58.904	ENSDNOG00000045949	-	71	50.920	Dasypus_novemcinctus
ENSHBUG00000013987	smn1	94	43.704	ENSDORG00000007082	Smn1	90	43.243	Dipodomys_ordii
ENSHBUG00000013987	smn1	63	45.810	ENSETEG00000001406	-	83	45.405	Echinops_telfairi
ENSHBUG00000013987	smn1	96	39.456	ENSEBUG00000011902	smn1	96	38.851	Eptatretus_burgeri
ENSHBUG00000013987	smn1	89	47.490	ENSEASG00005018000	-	90	45.098	Equus_asinus_asinus
ENSHBUG00000013987	smn1	94	52.555	ENSECAG00000015215	-	92	50.558	Equus_caballus
ENSHBUG00000013987	smn1	88	54.086	ENSEEUG00000015777	-	100	48.450	Erinaceus_europaeus
ENSHBUG00000013987	smn1	100	67.384	ENSELUG00000018067	smn1	100	67.384	Esox_lucius
ENSHBUG00000013987	smn1	94	55.805	ENSFCAG00000028292	SMN	92	52.256	Felis_catus
ENSHBUG00000013987	smn1	95	56.827	ENSFALG00000012320	-	95	54.135	Ficedula_albicollis
ENSHBUG00000013987	smn1	94	50.000	ENSFDAG00000017683	-	92	45.018	Fukomys_damarensis
ENSHBUG00000013987	smn1	97	78.986	ENSFHEG00000018508	smn1	100	78.623	Fundulus_heteroclitus
ENSHBUG00000013987	smn1	100	66.429	ENSGMOG00000017279	smn1	98	66.071	Gadus_morhua
ENSHBUG00000013987	smn1	95	51.460	ENSGALG00000002430	SMN	97	50.394	Gallus_gallus
ENSHBUG00000013987	smn1	100	80.565	ENSGAFG00000009501	smn1	100	80.565	Gambusia_affinis
ENSHBUG00000013987	smn1	100	81.004	ENSGACG00000010584	smn1	97	79.928	Gasterosteus_aculeatus
ENSHBUG00000013987	smn1	96	56.204	ENSGAGG00000011374	-	98	53.873	Gopherus_agassizii
ENSHBUG00000013987	smn1	97	38.889	ENSGAGG00000013639	-	92	37.624	Gopherus_agassizii
ENSHBUG00000013987	smn1	55	63.924	ENSGGOG00000026704	-	74	63.924	Gorilla_gorilla
ENSHBUG00000013987	smn1	91	52.896	ENSGGOG00000003872	-	93	53.876	Gorilla_gorilla
ENSHBUG00000013987	smn1	94	50.730	ENSHGLG00000001018	-	91	47.232	Heterocephalus_glaber_female
ENSHBUG00000013987	smn1	94	49.446	ENSHGLG00000001905	-	94	48.327	Heterocephalus_glaber_female
ENSHBUG00000013987	smn1	94	50.730	ENSHGLG00100011252	-	91	47.232	Heterocephalus_glaber_male
ENSHBUG00000013987	smn1	92	49.434	ENSHGLG00100018676	-	96	48.289	Heterocephalus_glaber_male
ENSHBUG00000013987	smn1	94	76.046	ENSHCOG00000017136	smn1	89	76.426	Hippocampus_comes
ENSHBUG00000013987	smn1	100	65.957	ENSIPUG00000012580	smn1	89	62.544	Ictalurus_punctatus
ENSHBUG00000013987	smn1	91	53.008	ENSSTOG00000012288	-	93	53.640	Ictidomys_tridecemlineatus
ENSHBUG00000013987	smn1	59	47.305	ENSJJAG00000014853	-	86	48.810	Jaculus_jaculus
ENSHBUG00000013987	smn1	100	78.596	ENSKMAG00000007239	smn1	100	78.596	Kryptolebias_marmoratus
ENSHBUG00000013987	smn1	100	81.338	ENSLBEG00000022550	smn1	100	81.338	Labrus_bergylta
ENSHBUG00000013987	smn1	99	33.003	ENSLACG00000009808	-	95	35.714	Latimeria_chalumnae
ENSHBUG00000013987	smn1	100	52.817	ENSLOCG00000011339	smn1	100	56.184	Lepisosteus_oculatus
ENSHBUG00000013987	smn1	97	31.071	ENSLOCG00000000801	-	94	30.824	Lepisosteus_oculatus
ENSHBUG00000013987	smn1	94	50.365	ENSLAFG00000003425	-	89	49.817	Loxodonta_africana
ENSHBUG00000013987	smn1	94	55.805	ENSMFAG00000031523	SMN1	95	53.992	Macaca_fascicularis
ENSHBUG00000013987	smn1	94	51.493	ENSMFAG00000008812	-	91	51.493	Macaca_fascicularis
ENSHBUG00000013987	smn1	94	55.805	ENSMMUG00000020214	SMN1	92	55.725	Macaca_mulatta
ENSHBUG00000013987	smn1	94	50.746	ENSMMUG00000030594	-	91	49.270	Macaca_mulatta
ENSHBUG00000013987	smn1	94	55.805	ENSMNEG00000035094	-	92	55.725	Macaca_nemestrina
ENSHBUG00000013987	smn1	76	41.743	ENSMNEG00000036423	-	81	41.346	Macaca_nemestrina
ENSHBUG00000013987	smn1	94	55.805	ENSMLEG00000041902	-	93	55.725	Mandrillus_leucophaeus
ENSHBUG00000013987	smn1	100	82.394	ENSMAMG00000011034	smn1	100	83.099	Mastacembelus_armatus
ENSHBUG00000013987	smn1	100	98.925	ENSMZEG00005013634	smn1	100	98.925	Maylandia_zebra
ENSHBUG00000013987	smn1	69	51.295	ENSMGAG00000008889	-	95	46.392	Meleagris_gallopavo
ENSHBUG00000013987	smn1	91	53.101	ENSMAUG00000010262	Smn1	92	49.813	Mesocricetus_auratus
ENSHBUG00000013987	smn1	55	62.658	ENSMICG00000034708	-	81	57.778	Microcebus_murinus
ENSHBUG00000013987	smn1	94	54.887	ENSMOCG00000017833	Smn1	92	50.185	Microtus_ochrogaster
ENSHBUG00000013987	smn1	96	70.370	ENSMMOG00000005504	smn1	98	70.000	Mola_mola
ENSHBUG00000013987	smn1	97	54.448	ENSMODG00000001436	-	95	50.352	Monodelphis_domestica
ENSHBUG00000013987	smn1	100	83.451	ENSMALG00000008025	smn1	100	83.451	Monopterus_albus
ENSHBUG00000013987	smn1	94	54.135	MGP_CAROLIEiJ_G0018836	Smn1	92	51.311	Mus_caroli
ENSHBUG00000013987	smn1	94	53.759	ENSMUSG00000021645	Smn1	92	50.936	Mus_musculus
ENSHBUG00000013987	smn1	94	52.574	MGP_PahariEiJ_G0015911	Smn1	92	47.719	Mus_pahari
ENSHBUG00000013987	smn1	94	53.383	MGP_SPRETEiJ_G0019718	Smn1	92	50.562	Mus_spretus
ENSHBUG00000013987	smn1	92	54.412	ENSMPUG00000014470	-	93	51.311	Mustela_putorius_furo
ENSHBUG00000013987	smn1	94	51.408	ENSMLUG00000010603	-	88	53.237	Myotis_lucifugus
ENSHBUG00000013987	smn1	94	52.920	ENSNGAG00000019833	Smn1	92	52.612	Nannospalax_galili
ENSHBUG00000013987	smn1	100	98.227	ENSNBRG00000023000	smn1	100	98.227	Neolamprologus_brichardi
ENSHBUG00000013987	smn1	94	52.612	ENSNLEG00000004454	-	92	54.615	Nomascus_leucogenys
ENSHBUG00000013987	smn1	79	50.218	ENSMEUG00000011393	-	100	44.589	Notamacropus_eugenii
ENSHBUG00000013987	smn1	88	52.490	ENSOPRG00000002015	-	100	53.543	Ochotona_princeps
ENSHBUG00000013987	smn1	91	53.077	ENSODEG00000015976	-	91	54.104	Octodon_degus
ENSHBUG00000013987	smn1	100	96.809	ENSONIG00000011799	smn1	100	96.809	Oreochromis_niloticus
ENSHBUG00000013987	smn1	95	52.158	ENSOANG00000001626	-	95	52.788	Ornithorhynchus_anatinus
ENSHBUG00000013987	smn1	94	43.478	ENSOCUG00000025183	-	92	41.091	Oryctolagus_cuniculus
ENSHBUG00000013987	smn1	94	53.114	ENSOCUG00000026649	-	92	49.117	Oryctolagus_cuniculus
ENSHBUG00000013987	smn1	94	54.682	ENSOCUG00000017097	-	91	49.117	Oryctolagus_cuniculus
ENSHBUG00000013987	smn1	100	76.207	ENSORLG00000010552	smn1	100	79.505	Oryzias_latipes
ENSHBUG00000013987	smn1	100	70.103	ENSORLG00020007936	smn1	100	73.239	Oryzias_latipes_hni
ENSHBUG00000013987	smn1	100	78.092	ENSORLG00015022425	smn1	100	78.799	Oryzias_latipes_hsok
ENSHBUG00000013987	smn1	100	78.799	ENSOMEG00000007824	smn1	100	79.505	Oryzias_melastigma
ENSHBUG00000013987	smn1	91	47.653	ENSOGAG00000031414	-	92	46.792	Otolemur_garnettii
ENSHBUG00000013987	smn1	94	52.174	ENSOARG00000005425	-	97	47.547	Ovis_aries
ENSHBUG00000013987	smn1	94	52.809	ENSPPAG00000036640	-	92	54.615	Pan_paniscus
ENSHBUG00000013987	smn1	94	55.805	ENSPPRG00000005575	-	92	52.632	Panthera_pardus
ENSHBUG00000013987	smn1	94	55.805	ENSPTIG00000007745	-	92	52.632	Panthera_tigris_altaica
ENSHBUG00000013987	smn1	94	52.857	ENSPTRG00000016955	-	92	53.480	Pan_troglodytes
ENSHBUG00000013987	smn1	94	51.866	ENSPANG00000000253	-	91	51.866	Papio_anubis
ENSHBUG00000013987	smn1	94	55.805	ENSPANG00000013601	-	91	55.556	Papio_anubis
ENSHBUG00000013987	smn1	100	59.233	ENSPKIG00000011096	smn1	100	59.859	Paramormyrops_kingsleyae
ENSHBUG00000013987	smn1	92	53.933	ENSPSIG00000014787	-	88	53.623	Pelodiscus_sinensis
ENSHBUG00000013987	smn1	100	71.025	ENSPMGG00000012285	smn1	97	73.063	Periophthalmus_magnuspinnatus
ENSHBUG00000013987	smn1	91	40.755	ENSPMAG00000005004	smn1	91	37.638	Petromyzon_marinus
ENSHBUG00000013987	smn1	97	54.804	ENSPCIG00000025764	-	96	50.352	Phascolarctos_cinereus
ENSHBUG00000013987	smn1	100	80.565	ENSPFOG00000007786	smn1	100	80.565	Poecilia_formosa
ENSHBUG00000013987	smn1	100	80.919	ENSPLAG00000012071	smn1	100	80.919	Poecilia_latipinna
ENSHBUG00000013987	smn1	100	80.565	ENSPMEG00000017085	smn1	100	80.565	Poecilia_mexicana
ENSHBUG00000013987	smn1	100	80.212	ENSPREG00000005824	smn1	100	80.212	Poecilia_reticulata
ENSHBUG00000013987	smn1	91	51.111	ENSPPYG00000015533	-	95	52.874	Pongo_abelii
ENSHBUG00000013987	smn1	60	76.923	ENSPPYG00000019189	-	74	49.655	Pongo_abelii
ENSHBUG00000013987	smn1	91	53.257	ENSPCAG00000004187	-	98	51.527	Procavia_capensis
ENSHBUG00000013987	smn1	62	54.494	ENSPCOG00000022307	-	65	59.722	Propithecus_coquereli
ENSHBUG00000013987	smn1	94	53.791	ENSPVAG00000005977	-	91	52.399	Pteropus_vampyrus
ENSHBUG00000013987	smn1	100	98.227	ENSPNYG00000014148	smn1	100	98.227	Pundamilia_nyererei
ENSHBUG00000013987	smn1	100	67.616	ENSPNAG00000014007	smn1	87	62.143	Pygocentrus_nattereri
ENSHBUG00000013987	smn1	94	53.759	ENSRNOG00000018067	Smn1	92	50.187	Rattus_norvegicus
ENSHBUG00000013987	smn1	94	55.185	ENSRBIG00000037052	-	91	54.676	Rhinopithecus_bieti
ENSHBUG00000013987	smn1	97	50.538	ENSRBIG00000036775	-	93	50.909	Rhinopithecus_bieti
ENSHBUG00000013987	smn1	94	52.830	ENSRROG00000031088	-	90	53.125	Rhinopithecus_roxellana
ENSHBUG00000013987	smn1	94	55.185	ENSRROG00000039399	-	92	54.815	Rhinopithecus_roxellana
ENSHBUG00000013987	smn1	94	55.474	ENSSBOG00000011665	-	91	53.261	Saimiri_boliviensis_boliviensis
ENSHBUG00000013987	smn1	62	54.802	ENSSBOG00000020112	-	52	60.667	Saimiri_boliviensis_boliviensis
ENSHBUG00000013987	smn1	96	54.676	ENSSHAG00000001499	-	97	48.889	Sarcophilus_harrisii
ENSHBUG00000013987	smn1	100	59.091	ENSSFOG00015015507	smn1	100	56.537	Scleropages_formosus
ENSHBUG00000013987	smn1	100	76.325	ENSSMAG00000007922	smn1	100	79.152	Scophthalmus_maximus
ENSHBUG00000013987	smn1	100	86.268	ENSSDUG00000018533	smn1	100	86.268	Seriola_dumerili
ENSHBUG00000013987	smn1	100	86.620	ENSSLDG00000021135	smn1	100	86.620	Seriola_lalandi_dorsalis
ENSHBUG00000013987	smn1	97	58.042	ENSSPUG00000000373	-	99	55.634	Sphenodon_punctatus
ENSHBUG00000013987	smn1	100	83.746	ENSSPAG00000004345	smn1	100	83.392	Stegastes_partitus
ENSHBUG00000013987	smn1	94	54.152	ENSSSCG00000016970	-	91	52.399	Sus_scrofa
ENSHBUG00000013987	smn1	94	40.977	ENSSSCG00000029127	-	74	71.875	Sus_scrofa
ENSHBUG00000013987	smn1	91	52.941	ENSTGUG00000001548	-	95	50.000	Taeniopygia_guttata
ENSHBUG00000013987	smn1	100	71.631	ENSTRUG00000000736	smn	100	70.922	Takifugu_rubripes
ENSHBUG00000013987	smn1	100	68.403	ENSTNIG00000009892	smn1	100	68.403	Tetraodon_nigroviridis
ENSHBUG00000013987	smn1	55	63.694	ENSTBEG00000002399	-	87	58.564	Tupaia_belangeri
ENSHBUG00000013987	smn1	54	64.103	ENSTTRG00000005080	-	91	52.399	Tursiops_truncatus
ENSHBUG00000013987	smn1	54	64.744	ENSUAMG00000024947	-	57	64.744	Ursus_americanus
ENSHBUG00000013987	smn1	94	56.000	ENSUMAG00000007842	-	69	52.399	Ursus_maritimus
ENSHBUG00000013987	smn1	61	81.481	ENSVPAG00000009887	-	61	86.957	Vicugna_pacos
ENSHBUG00000013987	smn1	94	53.597	ENSVVUG00000006934	-	92	51.661	Vulpes_vulpes
ENSHBUG00000013987	smn1	98	55.160	ENSXETG00000018189	smn2	94	52.313	Xenopus_tropicalis
ENSHBUG00000013987	smn1	87	34.483	ENSXETG00000004912	-	82	57.627	Xenopus_tropicalis
ENSHBUG00000013987	smn1	100	79.859	ENSXMAG00000001521	smn1	100	79.505	Xiphophorus_maculatus