EuRBPDB

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  • Description
  • RBDs
  • Transcripts
  • Gene Model
  • PPI
  • Paralogs
  • Orthologs
Description
Ensembl ID
ENSHBUG00000014332 (Gene tree)
Gene ID
-
Gene Symbol
CPSF3 (1 of many)
Alias
CPSF-73|CPSF73|YSH1
Full Name
cleavage and polyadenylation specific factor 3
Gene Type
protein_coding
Species
Haplochromis_burtoni
Status
putative
Strand
Plus strand
Length
6561 bases
Position
chrJH426174.1:28505-35065
Accession
102298959
RBP type
canonical RBP
Summary
-
RNA binding domains(RBDs)
Protein IDDomain Pfam IDE-value Domain number Total number
ENSHBUP00000012593CPSF73-100_CPF11718.81.6e-4811
ENSHBUP00000012593Beta-CaspPF10996.83.3e-1911
ENSHBUP00000012593RMMBLPF07521.122.7e-2111
Transcripts
Transcript IDNameLengthRefSeq ID Protein IDLengthRefSeq IDUniportKB ID
ENSHBUT00000020083CPSF3 (1 of many)-2011209XM_014330415ENSHBUP00000012593402 (aa)XP_014185901-
Gene Model
Click here to download ENSHBUG00000014332's gene model file
Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000014332's network
Paralogs
Ensembl IDGene SymbolCoverageIdentiy ParalogGene SymbolCoverageIdentiy
ENSHBUG00000014332CPSF310080.000ENSHBUG00000001188cpsf36379.602
Orthologs
Ensembl IDGene SymbolCoverageIdentiy OrthologGene SymbolCoverageIdentiy Species
ENSHBUG00000014332CPSF39981.481ENSG00000119203CPSF36381.481Homo_sapiens
ENSHBUG00000014332CPSF310080.000ENSAPOG00000022087cpsf35981.030Acanthochromis_polyacanthus
ENSHBUG00000014332CPSF39981.728ENSAMEG00000008493CPSF35981.728Ailuropoda_melanoleuca
ENSHBUG00000014332CPSF310079.319ENSACIG00000009846cpsf36379.319Amphilophus_citrinellus
ENSHBUG00000014332CPSF310094.335ENSACIG00000023663CPSF36494.335Amphilophus_citrinellus
ENSHBUG00000014332CPSF310092.346ENSAOCG00000010077CPSF36391.791Amphiprion_ocellaris
ENSHBUG00000014332CPSF310079.753ENSAOCG00000022056cpsf35879.753Amphiprion_ocellaris
ENSHBUG00000014332CPSF310080.348ENSAPEG00000019526cpsf36380.348Amphiprion_percula
ENSHBUG00000014332CPSF310093.035ENSAPEG00000021167CPSF36393.035Amphiprion_percula
ENSHBUG00000014332CPSF310085.075ENSATEG00000014525CPSF35785.075Anabas_testudineus
ENSHBUG00000014332CPSF39981.750ENSATEG00000003959cpsf36381.750Anabas_testudineus
ENSHBUG00000014332CPSF39980.494ENSAPLG00000006941CPSF35980.494Anas_platyrhynchos
ENSHBUG00000014332CPSF39978.378ENSACAG00000001759CPSF36478.378Anolis_carolinensis
ENSHBUG00000014332CPSF39972.840ENSANAG00000031254CPSF35972.840Aotus_nancymaae
ENSHBUG00000014332CPSF310094.828ENSACLG00000018846CPSF36494.828Astatotilapia_calliptera
ENSHBUG00000014332CPSF310080.000ENSACLG00000014484cpsf36379.602Astatotilapia_calliptera
ENSHBUG00000014332CPSF310082.090ENSAMXG00000004786cpsf36382.090Astyanax_mexicanus
ENSHBUG00000014332CPSF39981.975ENSBTAG00000019735CPSF35981.975Bos_taurus
ENSHBUG00000014332CPSF39980.988ENSCJAG00000006276CPSF36080.988Callithrix_jacchus
ENSHBUG00000014332CPSF39981.728ENSCAFG00000003375CPSF35681.728Canis_familiaris
ENSHBUG00000014332CPSF38287.613ENSCAFG00020026799CPSF35387.613Canis_lupus_dingo
ENSHBUG00000014332CPSF39981.975ENSCHIG00000013973CPSF35981.975Capra_hircus
ENSHBUG00000014332CPSF39981.481ENSTSYG00000002967CPSF35981.481Carlito_syrichta
ENSHBUG00000014332CPSF39981.975ENSCAPG00000013851CPSF36181.975Cavia_aperea
ENSHBUG00000014332CPSF39981.975ENSCPOG00000011299CPSF35981.975Cavia_porcellus
ENSHBUG00000014332CPSF39981.235ENSCCAG00000036730CPSF36081.235Cebus_capucinus
ENSHBUG00000014332CPSF39977.833ENSCATG00000014770CPSF35290.099Cercocebus_atys
ENSHBUG00000014332CPSF39981.235ENSCLAG00000002727CPSF35981.235Chinchilla_lanigera
ENSHBUG00000014332CPSF39968.148ENSCSAG00000007125CPSF35668.148Chlorocebus_sabaeus
ENSHBUG00000014332CPSF39948.775ENSCHOG00000000180CPSF36148.775Choloepus_hoffmanni
ENSHBUG00000014332CPSF39979.753ENSCPBG00000014074CPSF35979.753Chrysemys_picta_bellii
ENSHBUG00000014332CPSF39959.413ENSCING00000007214-5859.413Ciona_intestinalis
ENSHBUG00000014332CPSF39976.238ENSCANG00000034435CPSF36176.238Colobus_angolensis_palliatus
ENSHBUG00000014332CPSF39980.988ENSCGRG00001013134Cpsf35980.988Cricetulus_griseus_chok1gshd
ENSHBUG00000014332CPSF39980.988ENSCGRG00000018319Cpsf35980.988Cricetulus_griseus_crigri
ENSHBUG00000014332CPSF310086.453ENSCSEG00000002021CPSF36386.453Cynoglossus_semilaevis
ENSHBUG00000014332CPSF310089.630ENSCVAG00000015067CPSF35989.630Cyprinodon_variegatus
ENSHBUG00000014332CPSF37873.567ENSCVAG00000022039-9473.567Cyprinodon_variegatus
ENSHBUG00000014332CPSF310082.108ENSDARG00000027649cpsf35982.108Danio_rerio
ENSHBUG00000014332CPSF39980.788ENSDNOG00000008940CPSF35780.788Dasypus_novemcinctus
ENSHBUG00000014332CPSF39282.574ENSDORG00000014263Cpsf35782.574Dipodomys_ordii
ENSHBUG00000014332CPSF39957.320FBgn0261065Cpsf735857.320Drosophila_melanogaster
ENSHBUG00000014332CPSF39282.574ENSETEG00000003893CPSF35782.574Echinops_telfairi
ENSHBUG00000014332CPSF39967.681ENSEBUG00000009018cpsf36068.384Eptatretus_burgeri
ENSHBUG00000014332CPSF39981.728ENSEASG00005003970CPSF35981.728Equus_asinus_asinus
ENSHBUG00000014332CPSF39981.728ENSECAG00000019911CPSF35388.272Equus_caballus
ENSHBUG00000014332CPSF39968.395ENSEEUG00000015422CPSF35968.395Erinaceus_europaeus
ENSHBUG00000014332CPSF39985.500ENSELUG00000013775cpsf36385.500Esox_lucius
ENSHBUG00000014332CPSF39981.975ENSFCAG00000007852CPSF36381.975Felis_catus
ENSHBUG00000014332CPSF39980.000ENSFALG00000006572CPSF36380.000Ficedula_albicollis
ENSHBUG00000014332CPSF39980.941ENSFDAG00000006317CPSF35980.941Fukomys_damarensis
ENSHBUG00000014332CPSF310076.341ENSFHEG00000012186CPSF310076.341Fundulus_heteroclitus
ENSHBUG00000014332CPSF310077.531ENSFHEG00000014774cpsf35877.531Fundulus_heteroclitus
ENSHBUG00000014332CPSF310081.235ENSGMOG00000003157cpsf35981.235Gadus_morhua
ENSHBUG00000014332CPSF39979.506ENSGALG00000016424CPSF36479.506Gallus_gallus
ENSHBUG00000014332CPSF310089.136ENSGAFG00000008016CPSF35989.136Gambusia_affinis
ENSHBUG00000014332CPSF310079.104ENSGAFG00000019449cpsf36379.104Gambusia_affinis
ENSHBUG00000014332CPSF39979.950ENSGAGG00000025583CPSF38079.950Gopherus_agassizii
ENSHBUG00000014332CPSF39981.481ENSGGOG00000001757CPSF36481.481Gorilla_gorilla
ENSHBUG00000014332CPSF39980.446ENSHGLG00000000666CPSF35980.446Heterocephalus_glaber_female
ENSHBUG00000014332CPSF39980.446ENSHGLG00100007765CPSF35980.446Heterocephalus_glaber_male
ENSHBUG00000014332CPSF39986.881ENSHCOG00000015957CPSF35886.881Hippocampus_comes
ENSHBUG00000014332CPSF39977.723ENSHCOG00000007251cpsf35877.723Hippocampus_comes
ENSHBUG00000014332CPSF310082.222ENSIPUG00000023488cpsf36381.095Ictalurus_punctatus
ENSHBUG00000014332CPSF39981.728ENSSTOG00000004476CPSF35981.728Ictidomys_tridecemlineatus
ENSHBUG00000014332CPSF39980.000ENSJJAG00000023415Cpsf35980.000Jaculus_jaculus
ENSHBUG00000014332CPSF310090.864ENSKMAG00000007317CPSF35990.864Kryptolebias_marmoratus
ENSHBUG00000014332CPSF310078.272ENSKMAG00000002806cpsf35878.272Kryptolebias_marmoratus
ENSHBUG00000014332CPSF39282.385ENSLBEG00000015018-9982.385Labrus_bergylta
ENSHBUG00000014332CPSF39291.667ENSLBEG00000013492CPSF35691.667Labrus_bergylta
ENSHBUG00000014332CPSF39972.070ENSLBEG00000020569cpsf35272.070Labrus_bergylta
ENSHBUG00000014332CPSF310068.719ENSLACG00000008308CPSF35968.719Latimeria_chalumnae
ENSHBUG00000014332CPSF310081.863ENSLOCG00000016823cpsf35981.863Lepisosteus_oculatus
ENSHBUG00000014332CPSF39981.728ENSLAFG00000009467CPSF36081.728Loxodonta_africana
ENSHBUG00000014332CPSF39981.235ENSMFAG00000001339CPSF36381.235Macaca_fascicularis
ENSHBUG00000014332CPSF39981.235ENSMMUG00000018038CPSF36381.235Macaca_mulatta
ENSHBUG00000014332CPSF39179.784ENSMNEG00000039447CPSF35979.784Macaca_nemestrina
ENSHBUG00000014332CPSF39981.481ENSMLEG00000026825CPSF35981.481Mandrillus_leucophaeus
ENSHBUG00000014332CPSF310092.786ENSMAMG00000008835CPSF36392.786Mastacembelus_armatus
ENSHBUG00000014332CPSF39980.149ENSMAMG00000003076cpsf35880.149Mastacembelus_armatus
ENSHBUG00000014332CPSF310080.000ENSMZEG00005014358cpsf36379.602Maylandia_zebra
ENSHBUG00000014332CPSF310094.828ENSMZEG00005006258CPSF36494.828Maylandia_zebra
ENSHBUG00000014332CPSF39979.506ENSMGAG00000013995CPSF36179.506Meleagris_gallopavo
ENSHBUG00000014332CPSF39278.667ENSMAUG00000000166Cpsf39978.667Mesocricetus_auratus
ENSHBUG00000014332CPSF39977.037ENSMICG00000002363CPSF36377.037Microcebus_murinus
ENSHBUG00000014332CPSF39976.658ENSMOCG00000020067Cpsf35776.658Microtus_ochrogaster
ENSHBUG00000014332CPSF39975.500ENSMMOG00000018212CPSF36075.500Mola_mola
ENSHBUG00000014332CPSF39980.340ENSMODG00000014703CPSF36080.340Monodelphis_domestica
ENSHBUG00000014332CPSF310081.592ENSMALG00000016416cpsf36381.592Monopterus_albus
ENSHBUG00000014332CPSF310086.486ENSMALG00000011474CPSF36286.486Monopterus_albus
ENSHBUG00000014332CPSF39980.494MGP_CAROLIEiJ_G0017640Cpsf35980.494Mus_caroli
ENSHBUG00000014332CPSF39980.494ENSMUSG00000054309Cpsf35980.494Mus_musculus
ENSHBUG00000014332CPSF39980.247MGP_PahariEiJ_G0029397Cpsf35980.247Mus_pahari
ENSHBUG00000014332CPSF39980.494MGP_SPRETEiJ_G0018481Cpsf35980.494Mus_spretus
ENSHBUG00000014332CPSF39981.436ENSMPUG00000013213CPSF35981.436Mustela_putorius_furo
ENSHBUG00000014332CPSF39981.034ENSMLUG00000010636CPSF35981.034Myotis_lucifugus
ENSHBUG00000014332CPSF39980.988ENSNGAG00000019836Cpsf35980.988Nannospalax_galili
ENSHBUG00000014332CPSF310079.259ENSNBRG00000004770cpsf36378.856Neolamprologus_brichardi
ENSHBUG00000014332CPSF310094.828ENSNBRG00000010525CPSF36494.828Neolamprologus_brichardi
ENSHBUG00000014332CPSF39981.235ENSNLEG00000013359CPSF36381.235Nomascus_leucogenys
ENSHBUG00000014332CPSF39160.647ENSMEUG00000013117-5460.647Notamacropus_eugenii
ENSHBUG00000014332CPSF39180.270ENSOPRG00000008902CPSF35480.270Ochotona_princeps
ENSHBUG00000014332CPSF39981.481ENSODEG00000003129CPSF35981.481Octodon_degus
ENSHBUG00000014332CPSF310080.741ENSONIG00000018812cpsf35880.741Oreochromis_niloticus
ENSHBUG00000014332CPSF39980.988ENSOANG00000008577CPSF37280.988Ornithorhynchus_anatinus
ENSHBUG00000014332CPSF39981.235ENSOCUG00000003728CPSF35981.235Oryctolagus_cuniculus
ENSHBUG00000014332CPSF310078.272ENSORLG00000018854cpsf35878.272Oryzias_latipes
ENSHBUG00000014332CPSF310078.109ENSORLG00020013331cpsf36378.109Oryzias_latipes_hni
ENSHBUG00000014332CPSF310078.856ENSORLG00015011017cpsf36378.856Oryzias_latipes_hsok
ENSHBUG00000014332CPSF310079.012ENSOMEG00000010647cpsf35679.012Oryzias_melastigma
ENSHBUG00000014332CPSF39971.358ENSOGAG00000001680CPSF35971.358Otolemur_garnettii
ENSHBUG00000014332CPSF39981.975ENSOARG00000015073CPSF35981.975Ovis_aries
ENSHBUG00000014332CPSF39981.481ENSPPAG00000042457CPSF35981.481Pan_paniscus
ENSHBUG00000014332CPSF39981.975ENSPPRG00000016790CPSF36381.975Panthera_pardus
ENSHBUG00000014332CPSF39981.975ENSPTIG00000003920CPSF36481.975Panthera_tigris_altaica
ENSHBUG00000014332CPSF39981.481ENSPTRG00000011638CPSF35981.481Pan_troglodytes
ENSHBUG00000014332CPSF39981.481ENSPANG00000016798CPSF35981.481Papio_anubis
ENSHBUG00000014332CPSF310084.864ENSPKIG00000023646cpsf36484.864Paramormyrops_kingsleyae
ENSHBUG00000014332CPSF39979.506ENSPSIG00000016144CPSF35979.506Pelodiscus_sinensis
ENSHBUG00000014332CPSF310087.841ENSPMGG00000015311CPSF310087.841Periophthalmus_magnuspinnatus
ENSHBUG00000014332CPSF310075.622ENSPMGG00000006141-6075.622Periophthalmus_magnuspinnatus
ENSHBUG00000014332CPSF39981.481ENSPEMG00000017668Cpsf35981.481Peromyscus_maniculatus_bairdii
ENSHBUG00000014332CPSF39981.235ENSPCIG00000009823CPSF36081.235Phascolarctos_cinereus
ENSHBUG00000014332CPSF310088.395ENSPFOG00000010418-5988.395Poecilia_formosa
ENSHBUG00000014332CPSF310078.025ENSPFOG00000015922cpsf35878.025Poecilia_formosa
ENSHBUG00000014332CPSF310088.395ENSPLAG00000021300-10088.395Poecilia_latipinna
ENSHBUG00000014332CPSF310078.025ENSPLAG00000000882cpsf35878.025Poecilia_latipinna
ENSHBUG00000014332CPSF35697.768ENSPMEG00000021555CPSF38897.768Poecilia_mexicana
ENSHBUG00000014332CPSF310078.272ENSPMEG00000018309cpsf35878.272Poecilia_mexicana
ENSHBUG00000014332CPSF310078.856ENSPREG00000014875cpsf36378.856Poecilia_reticulata
ENSHBUG00000014332CPSF310077.114ENSPREG00000004482CPSF35677.114Poecilia_reticulata
ENSHBUG00000014332CPSF39981.235ENSPPYG00000012666CPSF36281.235Pongo_abelii
ENSHBUG00000014332CPSF39981.436ENSPVAG00000005324CPSF35981.436Pteropus_vampyrus
ENSHBUG00000014332CPSF310080.000ENSPNYG00000004405cpsf36379.602Pundamilia_nyererei
ENSHBUG00000014332CPSF380100.000ENSPNYG00000021047CPSF353100.000Pundamilia_nyererei
ENSHBUG00000014332CPSF310081.127ENSPNAG00000023060cpsf36481.127Pygocentrus_nattereri
ENSHBUG00000014332CPSF310080.049ENSRNOG00000052418Cpsf35980.049Rattus_norvegicus
ENSHBUG00000014332CPSF39976.049ENSRBIG00000041615CPSF36176.049Rhinopithecus_bieti
ENSHBUG00000014332CPSF39981.481ENSRROG00000033792CPSF36081.481Rhinopithecus_roxellana
ENSHBUG00000014332CPSF37935.309YLR277CYSH15035.309Saccharomyces_cerevisiae
ENSHBUG00000014332CPSF39975.795ENSSBOG00000027263CPSF35975.795Saimiri_boliviensis_boliviensis
ENSHBUG00000014332CPSF39980.988ENSSHAG00000007024CPSF35980.988Sarcophilus_harrisii
ENSHBUG00000014332CPSF310084.406ENSSFOG00015002108cpsf36484.406Scleropages_formosus
ENSHBUG00000014332CPSF39292.162ENSSMAG00000020534CPSF35492.162Scophthalmus_maximus
ENSHBUG00000014332CPSF310093.812ENSSDUG00000018498CPSF36493.812Seriola_dumerili
ENSHBUG00000014332CPSF310080.741ENSSDUG00000002828cpsf35780.741Seriola_dumerili
ENSHBUG00000014332CPSF310080.988ENSSLDG00000008469cpsf35780.988Seriola_lalandi_dorsalis
ENSHBUG00000014332CPSF310092.804ENSSLDG00000005234CPSF36392.804Seriola_lalandi_dorsalis
ENSHBUG00000014332CPSF39978.765ENSSPUG00000015525CPSF35978.765Sphenodon_punctatus
ENSHBUG00000014332CPSF310092.099ENSSPAG00000002906CPSF36392.040Stegastes_partitus
ENSHBUG00000014332CPSF310080.741ENSSPAG00000018579cpsf35880.741Stegastes_partitus
ENSHBUG00000014332CPSF39981.728ENSSSCG00000020799CPSF36481.728Sus_scrofa
ENSHBUG00000014332CPSF39979.753ENSTGUG00000013016CPSF35979.753Taeniopygia_guttata
ENSHBUG00000014332CPSF310079.653ENSTRUG00000013905CPSF310079.653Takifugu_rubripes
ENSHBUG00000014332CPSF39981.000ENSTRUG00000007030cpsf39781.000Takifugu_rubripes
ENSHBUG00000014332CPSF39482.415ENSUAMG00000007535CPSF35582.415Ursus_americanus
ENSHBUG00000014332CPSF39981.728ENSUMAG00000003676CPSF36381.728Ursus_maritimus
ENSHBUG00000014332CPSF39281.769ENSVPAG00000008041CPSF35981.769Vicugna_pacos
ENSHBUG00000014332CPSF39981.728ENSVVUG00000002194CPSF35981.728Vulpes_vulpes
ENSHBUG00000014332CPSF39976.980ENSXETG00000008263cpsf35876.980Xenopus_tropicalis
ENSHBUG00000014332CPSF310078.607ENSXCOG00000019695cpsf35878.607Xiphophorus_couchianus
ENSHBUG00000014332CPSF39286.828ENSXCOG00000000957-8786.828Xiphophorus_couchianus
ENSHBUG00000014332CPSF310088.395ENSXMAG00000027291CPSF35988.395Xiphophorus_maculatus
ENSHBUG00000014332CPSF310078.025ENSXMAG00000009784cpsf36278.025Xiphophorus_maculatus

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