EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000014694 (Gene tree)
Gene ID: 102299761
Gene Symbol: upf1 (1 of many)
Alias: rent1|wu:fi40f07|wu:fj48a01|zgc:55472
Full Name: regulator of nonsense transcripts 1-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 9204 bases
Position: chrJH425358.1:2551986-2561189
Accession: 102299761
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000012883	UPF1_Zn_bind	PF09416.10	1.3e-55	1	1
ENSHBUP00000012883	ResIII	PF04851.15	1.9e-05	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000020432	-	2712	XM_014333087	ENSHBUP00000012883	903 (aa)	XP_014188573	-

Gene Model

Click here to download ENSHBUG00000014694's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000014694's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000014694	upf1	100	77.602	ENSHBUG00000008939	upf1	100	77.602

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000014694	upf1	100	86.207	ENSG00000005007	UPF1	90	86.207	Homo_sapiens
ENSHBUG00000014694	upf1	100	97.436	ENSAPOG00000023773	upf1	90	97.436	Acanthochromis_polyacanthus
ENSHBUG00000014694	upf1	100	86.207	ENSAPOG00000010916	-	90	86.207	Acanthochromis_polyacanthus
ENSHBUG00000014694	upf1	100	86.207	ENSAMEG00000011474	UPF1	90	86.207	Ailuropoda_melanoleuca
ENSHBUG00000014694	upf1	90	85.057	ENSACIG00000010985	-	87	85.057	Amphilophus_citrinellus
ENSHBUG00000014694	upf1	100	98.701	ENSACIG00000019949	upf1	89	98.701	Amphilophus_citrinellus
ENSHBUG00000014694	upf1	100	86.207	ENSAOCG00000006352	-	90	86.207	Amphiprion_ocellaris
ENSHBUG00000014694	upf1	100	97.436	ENSAOCG00000018519	upf1	90	97.436	Amphiprion_ocellaris
ENSHBUG00000014694	upf1	100	97.436	ENSAPEG00000016344	upf1	90	97.436	Amphiprion_percula
ENSHBUG00000014694	upf1	100	86.207	ENSAPEG00000006292	-	90	86.207	Amphiprion_percula
ENSHBUG00000014694	upf1	100	96.154	ENSATEG00000017867	upf1	88	96.154	Anabas_testudineus
ENSHBUG00000014694	upf1	100	86.207	ENSATEG00000016606	-	90	86.207	Anabas_testudineus
ENSHBUG00000014694	upf1	90	87.356	ENSAPLG00000009175	UPF1	86	87.356	Anas_platyrhynchos
ENSHBUG00000014694	upf1	90	86.207	ENSANAG00000024107	UPF1	82	86.207	Aotus_nancymaae
ENSHBUG00000014694	upf1	100	100.000	ENSACLG00000007181	upf1	89	100.000	Astatotilapia_calliptera
ENSHBUG00000014694	upf1	100	86.207	ENSACLG00000022630	-	90	86.207	Astatotilapia_calliptera
ENSHBUG00000014694	upf1	100	93.590	ENSAMXG00000042187	upf1	89	93.590	Astyanax_mexicanus
ENSHBUG00000014694	upf1	100	86.207	ENSBTAG00000020922	UPF1	90	86.207	Bos_taurus
ENSHBUG00000014694	upf1	89	50.057	WBGene00004880	smg-2	81	49.943	Caenorhabditis_elegans
ENSHBUG00000014694	upf1	100	86.207	ENSCJAG00000019627	UPF1	90	86.207	Callithrix_jacchus
ENSHBUG00000014694	upf1	100	86.207	ENSCAFG00000014578	UPF1	90	86.207	Canis_familiaris
ENSHBUG00000014694	upf1	100	86.207	ENSCAFG00020012347	UPF1	90	86.207	Canis_lupus_dingo
ENSHBUG00000014694	upf1	100	86.207	ENSCHIG00000011018	UPF1	90	86.207	Capra_hircus
ENSHBUG00000014694	upf1	90	85.057	ENSTSYG00000008877	UPF1	84	85.057	Carlito_syrichta
ENSHBUG00000014694	upf1	90	86.207	ENSCAPG00000005758	UPF1	82	86.207	Cavia_aperea
ENSHBUG00000014694	upf1	100	86.207	ENSCPOG00000025463	UPF1	90	86.207	Cavia_porcellus
ENSHBUG00000014694	upf1	100	86.207	ENSCCAG00000032175	UPF1	90	86.207	Cebus_capucinus
ENSHBUG00000014694	upf1	90	86.207	ENSCATG00000040306	UPF1	84	86.207	Cercocebus_atys
ENSHBUG00000014694	upf1	90	86.207	ENSCLAG00000004037	UPF1	86	86.207	Chinchilla_lanigera
ENSHBUG00000014694	upf1	100	86.207	ENSCSAG00000005276	UPF1	90	86.207	Chlorocebus_sabaeus
ENSHBUG00000014694	upf1	100	90.361	ENSCPBG00000012513	UPF1	90	90.361	Chrysemys_picta_bellii
ENSHBUG00000014694	upf1	86	68.949	ENSCING00000021399	-	99	69.303	Ciona_intestinalis
ENSHBUG00000014694	upf1	99	68.293	ENSCSAVG00000006533	-	89	68.293	Ciona_savignyi
ENSHBUG00000014694	upf1	90	86.207	ENSCANG00000029819	UPF1	84	86.207	Colobus_angolensis_palliatus
ENSHBUG00000014694	upf1	100	85.057	ENSCGRG00001021067	Upf1	92	85.057	Cricetulus_griseus_chok1gshd
ENSHBUG00000014694	upf1	90	85.057	ENSCGRG00000013480	Upf1	84	85.057	Cricetulus_griseus_crigri
ENSHBUG00000014694	upf1	100	96.154	ENSCSEG00000017239	upf1	90	96.154	Cynoglossus_semilaevis
ENSHBUG00000014694	upf1	100	86.207	ENSCSEG00000016159	-	90	86.207	Cynoglossus_semilaevis
ENSHBUG00000014694	upf1	100	86.207	ENSCVAG00000010561	upf1	90	86.207	Cyprinodon_variegatus
ENSHBUG00000014694	upf1	100	86.207	ENSDARG00000016302	upf1	90	86.207	Danio_rerio
ENSHBUG00000014694	upf1	90	86.207	ENSDORG00000009984	Upf1	82	86.207	Dipodomys_ordii
ENSHBUG00000014694	upf1	92	63.227	FBgn0030354	Upf1	76	63.008	Drosophila_melanogaster
ENSHBUG00000014694	upf1	58	64.532	ENSEBUG00000010069	upf1	96	65.677	Eptatretus_burgeri
ENSHBUG00000014694	upf1	100	86.207	ENSEASG00005006549	UPF1	90	86.207	Equus_asinus_asinus
ENSHBUG00000014694	upf1	100	86.207	ENSECAG00000010639	UPF1	90	86.207	Equus_caballus
ENSHBUG00000014694	upf1	100	94.805	ENSELUG00000020917	upf1	89	94.805	Esox_lucius
ENSHBUG00000014694	upf1	99	98.592	ENSELUG00000012916	-	90	87.356	Esox_lucius
ENSHBUG00000014694	upf1	100	86.207	ENSFCAG00000009757	UPF1	90	86.207	Felis_catus
ENSHBUG00000014694	upf1	90	87.356	ENSFALG00000009312	UPF1	82	87.356	Ficedula_albicollis
ENSHBUG00000014694	upf1	90	86.207	ENSFDAG00000014816	UPF1	86	86.207	Fukomys_damarensis
ENSHBUG00000014694	upf1	80	97.727	ENSFHEG00000016276	-	81	97.727	Fundulus_heteroclitus
ENSHBUG00000014694	upf1	100	88.608	ENSFHEG00000006428	upf1	93	88.608	Fundulus_heteroclitus
ENSHBUG00000014694	upf1	100	93.671	ENSGMOG00000007541	upf1	90	93.671	Gadus_morhua
ENSHBUG00000014694	upf1	100	87.356	ENSGALG00000003220	UPF1	90	87.356	Gallus_gallus
ENSHBUG00000014694	upf1	100	89.157	ENSGAFG00000004831	upf1	91	81.768	Gambusia_affinis
ENSHBUG00000014694	upf1	63	97.359	ENSGAFG00000015443	-	70	97.359	Gambusia_affinis
ENSHBUG00000014694	upf1	100	87.356	ENSGAGG00000022217	UPF1	90	87.356	Gopherus_agassizii
ENSHBUG00000014694	upf1	90	86.207	ENSGGOG00000002608	UPF1	85	86.207	Gorilla_gorilla
ENSHBUG00000014694	upf1	100	89.157	ENSHGLG00000010900	UPF1	90	89.157	Heterocephalus_glaber_female
ENSHBUG00000014694	upf1	90	89.157	ENSHGLG00100005904	UPF1	82	89.157	Heterocephalus_glaber_male
ENSHBUG00000014694	upf1	100	90.361	ENSHCOG00000008918	upf1	90	90.361	Hippocampus_comes
ENSHBUG00000014694	upf1	100	93.590	ENSIPUG00000005108	UPF1	89	93.590	Ictalurus_punctatus
ENSHBUG00000014694	upf1	100	86.207	ENSSTOG00000009196	UPF1	90	86.207	Ictidomys_tridecemlineatus
ENSHBUG00000014694	upf1	100	85.057	ENSJJAG00000023151	Upf1	90	85.057	Jaculus_jaculus
ENSHBUG00000014694	upf1	100	86.207	ENSKMAG00000004962	upf1	90	86.207	Kryptolebias_marmoratus
ENSHBUG00000014694	upf1	100	96.154	ENSLBEG00000014862	upf1	88	96.154	Labrus_bergylta
ENSHBUG00000014694	upf1	100	89.157	ENSLBEG00000027848	-	89	89.157	Labrus_bergylta
ENSHBUG00000014694	upf1	64	98.397	ENSLACG00000008482	UPF1	84	98.397	Latimeria_chalumnae
ENSHBUG00000014694	upf1	100	86.207	ENSLOCG00000002072	upf1	90	86.207	Lepisosteus_oculatus
ENSHBUG00000014694	upf1	100	83.908	ENSLAFG00000014963	UPF1	90	83.908	Loxodonta_africana
ENSHBUG00000014694	upf1	100	86.207	ENSMFAG00000037748	UPF1	90	86.207	Macaca_fascicularis
ENSHBUG00000014694	upf1	100	86.207	ENSMMUG00000023286	UPF1	90	86.207	Macaca_mulatta
ENSHBUG00000014694	upf1	100	86.207	ENSMNEG00000000046	UPF1	90	86.207	Macaca_nemestrina
ENSHBUG00000014694	upf1	90	86.207	ENSMLEG00000028404	UPF1	86	86.207	Mandrillus_leucophaeus
ENSHBUG00000014694	upf1	100	96.154	ENSMAMG00000006229	upf1	88	96.154	Mastacembelus_armatus
ENSHBUG00000014694	upf1	100	87.952	ENSMAMG00000006231	-	90	85.057	Mastacembelus_armatus
ENSHBUG00000014694	upf1	100	100.000	ENSMZEG00005003489	upf1	88	100.000	Maylandia_zebra
ENSHBUG00000014694	upf1	100	86.207	ENSMZEG00005016386	-	90	86.207	Maylandia_zebra
ENSHBUG00000014694	upf1	90	87.356	ENSMGAG00000004745	UPF1	86	87.356	Meleagris_gallopavo
ENSHBUG00000014694	upf1	90	85.057	ENSMAUG00000011398	Upf1	82	85.057	Mesocricetus_auratus
ENSHBUG00000014694	upf1	100	86.207	ENSMICG00000001659	UPF1	91	86.207	Microcebus_murinus
ENSHBUG00000014694	upf1	100	85.057	ENSMOCG00000005699	Upf1	90	85.057	Microtus_ochrogaster
ENSHBUG00000014694	upf1	90	85.057	ENSMMOG00000007537	-	85	85.057	Mola_mola
ENSHBUG00000014694	upf1	100	94.872	ENSMMOG00000007881	upf1	90	94.872	Mola_mola
ENSHBUG00000014694	upf1	100	87.356	ENSMODG00000003689	UPF1	90	87.356	Monodelphis_domestica
ENSHBUG00000014694	upf1	100	86.207	ENSMALG00000018100	-	90	86.207	Monopterus_albus
ENSHBUG00000014694	upf1	100	97.436	ENSMALG00000000144	upf1	90	97.436	Monopterus_albus
ENSHBUG00000014694	upf1	100	85.057	MGP_CAROLIEiJ_G0031142	Upf1	90	85.057	Mus_caroli
ENSHBUG00000014694	upf1	100	85.057	ENSMUSG00000058301	Upf1	90	85.057	Mus_musculus
ENSHBUG00000014694	upf1	100	85.057	MGP_PahariEiJ_G0021607	Upf1	90	85.057	Mus_pahari
ENSHBUG00000014694	upf1	100	85.057	MGP_SPRETEiJ_G0032260	Upf1	90	85.057	Mus_spretus
ENSHBUG00000014694	upf1	100	86.207	ENSMPUG00000015516	UPF1	90	86.207	Mustela_putorius_furo
ENSHBUG00000014694	upf1	99	86.207	ENSMLUG00000012122	UPF1	90	86.207	Myotis_lucifugus
ENSHBUG00000014694	upf1	100	85.057	ENSNGAG00000024107	Upf1	90	85.057	Nannospalax_galili
ENSHBUG00000014694	upf1	100	100.000	ENSNBRG00000000670	upf1	90	100.000	Neolamprologus_brichardi
ENSHBUG00000014694	upf1	100	96.485	ENSNBRG00000022069	-	83	96.485	Neolamprologus_brichardi
ENSHBUG00000014694	upf1	90	86.207	ENSNLEG00000006062	UPF1	85	86.207	Nomascus_leucogenys
ENSHBUG00000014694	upf1	90	89.157	ENSOPRG00000014018	UPF1	86	89.157	Ochotona_princeps
ENSHBUG00000014694	upf1	100	86.207	ENSODEG00000012426	UPF1	90	86.207	Octodon_degus
ENSHBUG00000014694	upf1	100	86.207	ENSONIG00000012729	-	90	86.207	Oreochromis_niloticus
ENSHBUG00000014694	upf1	100	98.718	ENSONIG00000010452	upf1	88	98.718	Oreochromis_niloticus
ENSHBUG00000014694	upf1	100	78.266	ENSOANG00000004568	UPF1	91	77.837	Ornithorhynchus_anatinus
ENSHBUG00000014694	upf1	100	85.057	ENSORLG00000008453	upf1	90	85.057	Oryzias_latipes
ENSHBUG00000014694	upf1	100	85.057	ENSORLG00020014758	upf1	90	85.057	Oryzias_latipes_hni
ENSHBUG00000014694	upf1	100	85.057	ENSORLG00015010165	upf1	90	85.057	Oryzias_latipes_hsok
ENSHBUG00000014694	upf1	100	86.207	ENSOMEG00000003665	upf1	90	86.207	Oryzias_melastigma
ENSHBUG00000014694	upf1	100	86.207	ENSOGAG00000012866	UPF1	90	86.207	Otolemur_garnettii
ENSHBUG00000014694	upf1	95	77.610	ENSOARG00000010739	UPF1	90	77.395	Ovis_aries
ENSHBUG00000014694	upf1	90	86.207	ENSPPAG00000043884	UPF1	82	86.207	Pan_paniscus
ENSHBUG00000014694	upf1	100	86.207	ENSPPRG00000023470	UPF1	90	86.207	Panthera_pardus
ENSHBUG00000014694	upf1	90	86.207	ENSPTIG00000010159	UPF1	85	86.207	Panthera_tigris_altaica
ENSHBUG00000014694	upf1	100	86.207	ENSPTRG00000010721	UPF1	90	86.207	Pan_troglodytes
ENSHBUG00000014694	upf1	100	86.207	ENSPANG00000008847	UPF1	90	86.207	Papio_anubis
ENSHBUG00000014694	upf1	92	82.249	ENSPKIG00000006069	upf1	87	82.249	Paramormyrops_kingsleyae
ENSHBUG00000014694	upf1	71	96.655	ENSPSIG00000009491	UPF1	85	96.655	Pelodiscus_sinensis
ENSHBUG00000014694	upf1	100	83.296	ENSPMGG00000017327	upf1	89	83.296	Periophthalmus_magnuspinnatus
ENSHBUG00000014694	upf1	100	85.057	ENSPEMG00000001085	Upf1	90	85.057	Peromyscus_maniculatus_bairdii
ENSHBUG00000014694	upf1	100	87.342	ENSPMAG00000001206	upf1	89	87.342	Petromyzon_marinus
ENSHBUG00000014694	upf1	100	87.356	ENSPCIG00000006156	UPF1	90	87.356	Phascolarctos_cinereus
ENSHBUG00000014694	upf1	100	93.506	ENSPLAG00000018155	-	88	93.506	Poecilia_latipinna
ENSHBUG00000014694	upf1	100	84.444	ENSPLAG00000016232	-	91	81.768	Poecilia_latipinna
ENSHBUG00000014694	upf1	100	84.444	ENSPMEG00000016319	-	91	81.567	Poecilia_mexicana
ENSHBUG00000014694	upf1	100	94.805	ENSPMEG00000011443	-	89	94.805	Poecilia_mexicana
ENSHBUG00000014694	upf1	100	94.805	ENSPREG00000009940	upf1	88	94.805	Poecilia_reticulata
ENSHBUG00000014694	upf1	100	84.444	ENSPREG00000011247	-	91	83.696	Poecilia_reticulata
ENSHBUG00000014694	upf1	100	86.207	ENSPPYG00000009752	UPF1	90	86.207	Pongo_abelii
ENSHBUG00000014694	upf1	67	98.990	ENSPCAG00000012962	UPF1	59	98.990	Procavia_capensis
ENSHBUG00000014694	upf1	100	86.207	ENSPCOG00000023813	UPF1	90	86.207	Propithecus_coquereli
ENSHBUG00000014694	upf1	74	97.436	ENSPVAG00000003183	UPF1	69	97.436	Pteropus_vampyrus
ENSHBUG00000014694	upf1	100	86.207	ENSPNYG00000016731	-	90	86.207	Pundamilia_nyererei
ENSHBUG00000014694	upf1	100	100.000	ENSPNYG00000003694	upf1	88	100.000	Pundamilia_nyererei
ENSHBUG00000014694	upf1	100	93.590	ENSPNAG00000025614	upf1	89	93.590	Pygocentrus_nattereri
ENSHBUG00000014694	upf1	100	85.057	ENSRNOG00000020134	Upf1	90	85.057	Rattus_norvegicus
ENSHBUG00000014694	upf1	90	86.207	ENSRBIG00000013894	UPF1	86	87.430	Rhinopithecus_bieti
ENSHBUG00000014694	upf1	90	86.207	ENSRROG00000040935	UPF1	86	87.430	Rhinopithecus_roxellana
ENSHBUG00000014694	upf1	84	50.120	YMR080C	NAM7	85	50.120	Saccharomyces_cerevisiae
ENSHBUG00000014694	upf1	90	86.207	ENSSBOG00000023632	UPF1	83	86.207	Saimiri_boliviensis_boliviensis
ENSHBUG00000014694	upf1	90	87.356	ENSSHAG00000010499	UPF1	86	87.356	Sarcophilus_harrisii
ENSHBUG00000014694	upf1	100	86.207	ENSSFOG00015021095	upf1	90	86.207	Scleropages_formosus
ENSHBUG00000014694	upf1	100	86.207	ENSSMAG00000021018	-	90	86.207	Scophthalmus_maximus
ENSHBUG00000014694	upf1	100	94.872	ENSSMAG00000005055	upf1	88	94.872	Scophthalmus_maximus
ENSHBUG00000014694	upf1	100	97.436	ENSSDUG00000013320	upf1	88	97.436	Seriola_dumerili
ENSHBUG00000014694	upf1	100	86.207	ENSSDUG00000009629	-	90	86.207	Seriola_dumerili
ENSHBUG00000014694	upf1	100	86.207	ENSSLDG00000006878	-	90	86.207	Seriola_lalandi_dorsalis
ENSHBUG00000014694	upf1	100	97.436	ENSSLDG00000020868	upf1	89	97.436	Seriola_lalandi_dorsalis
ENSHBUG00000014694	upf1	100	86.047	ENSSPUG00000010538	UPF1	90	86.047	Sphenodon_punctatus
ENSHBUG00000014694	upf1	100	86.207	ENSSPAG00000011521	-	90	86.207	Stegastes_partitus
ENSHBUG00000014694	upf1	100	98.718	ENSSPAG00000000003	upf1	89	98.718	Stegastes_partitus
ENSHBUG00000014694	upf1	100	86.207	ENSSSCG00000039301	UPF1	90	86.207	Sus_scrofa
ENSHBUG00000014694	upf1	92	70.138	ENSTGUG00000001057	UPF1	100	70.103	Taeniopygia_guttata
ENSHBUG00000014694	upf1	100	98.701	ENSTRUG00000000150	upf1	90	98.701	Takifugu_rubripes
ENSHBUG00000014694	upf1	100	89.157	ENSTRUG00000005131	-	90	89.157	Takifugu_rubripes
ENSHBUG00000014694	upf1	100	86.207	ENSTTRG00000011544	UPF1	90	86.207	Tursiops_truncatus
ENSHBUG00000014694	upf1	100	86.207	ENSUAMG00000007093	UPF1	90	86.207	Ursus_americanus
ENSHBUG00000014694	upf1	90	86.207	ENSUMAG00000006652	UPF1	88	88.396	Ursus_maritimus
ENSHBUG00000014694	upf1	100	86.207	ENSVVUG00000007797	UPF1	90	86.207	Vulpes_vulpes
ENSHBUG00000014694	upf1	92	85.393	ENSXETG00000013602	upf1	85	85.393	Xenopus_tropicalis
ENSHBUG00000014694	upf1	96	95.122	ENSXCOG00000015275	-	87	95.122	Xiphophorus_couchianus
ENSHBUG00000014694	upf1	90	89.157	ENSXCOG00000005764	-	88	84.035	Xiphophorus_couchianus
ENSHBUG00000014694	upf1	100	92.308	ENSXMAG00000001703	-	90	92.308	Xiphophorus_maculatus
ENSHBUG00000014694	upf1	100	89.157	ENSXMAG00000002540	-	91	81.588	Xiphophorus_maculatus