EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000014701 (Gene tree)
Gene ID: 102308233
Gene Symbol: chd6
Alias: si:dkey-6e2.3|zmp:0000000556
Full Name: chromodomain-helicase-DNA-binding protein 6-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 70075 bases
Position: chrJH425673.1:93467-163541
Accession: 102308233
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000029935	ResIII	PF04851.15	1.6e-06	1	1
ENSHBUP00000012951	ResIII	PF04851.15	1.7e-06	1	1
ENSHBUP00000029969	ResIII	PF04851.15	1.8e-06	1	1
ENSHBUP00000029935	BRK	PF07533.16	4.4e-18	1	1
ENSHBUP00000029969	BRK	PF07533.16	4.6e-18	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000032760	-	10859	XM_005942767	ENSHBUP00000029969	3612 (aa)	XP_005942829	UPI0006C95818
ENSHBUT00000020501	-	10220	-	ENSHBUP00000029935	3399 (aa)	-	UPI0003BD803E
ENSHBUT00000020528	-	10688	-	ENSHBUP00000012951	3555 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000014701's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000014701's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000014701	chd6	58	61.889	ENSHBUG00000019225	chd7	66	58.358
ENSHBUG00000014701	chd6	56	63.322	ENSHBUG00000023322	chd9	72	63.574

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000014701	chd6	65	73.482	ENSG00000124177	CHD6	99	80.695	Homo_sapiens
ENSHBUG00000014701	chd6	99	87.390	ENSAPOG00000013736	chd6	99	86.283	Acanthochromis_polyacanthus
ENSHBUG00000014701	chd6	66	71.988	ENSAMEG00000009496	CHD6	77	72.659	Ailuropoda_melanoleuca
ENSHBUG00000014701	chd6	99	84.662	ENSATEG00000005608	chd6	99	84.528	Anabas_testudineus
ENSHBUG00000014701	chd6	62	77.595	ENSAPLG00000015592	CHD6	77	73.784	Anas_platyrhynchos
ENSHBUG00000014701	chd6	62	70.159	ENSACAG00000006842	CHD6	77	68.214	Anolis_carolinensis
ENSHBUG00000014701	chd6	62	76.738	ENSANAG00000037548	CHD6	99	81.319	Aotus_nancymaae
ENSHBUG00000014701	chd6	76	71.368	ENSAMXG00000009576	chd6	84	71.991	Astyanax_mexicanus
ENSHBUG00000014701	chd6	64	75.100	ENSBTAG00000005733	CHD6	77	71.341	Bos_taurus
ENSHBUG00000014701	chd6	62	76.669	ENSCJAG00000017920	CHD6	99	81.136	Callithrix_jacchus
ENSHBUG00000014701	chd6	70	68.421	ENSCAFG00000009236	CHD6	78	72.153	Canis_familiaris
ENSHBUG00000014701	chd6	65	73.227	ENSCAFG00020012906	CHD6	95	83.815	Canis_lupus_dingo
ENSHBUG00000014701	chd6	64	75.033	ENSCHIG00000017606	CHD6	77	71.280	Capra_hircus
ENSHBUG00000014701	chd6	56	76.508	ENSTSYG00000014635	CHD6	77	76.348	Carlito_syrichta
ENSHBUG00000014701	chd6	64	74.074	ENSCPOG00000015641	CHD6	78	71.975	Cavia_porcellus
ENSHBUG00000014701	chd6	62	76.807	ENSCCAG00000036828	CHD6	99	81.319	Cebus_capucinus
ENSHBUG00000014701	chd6	63	75.100	ENSCATG00000039248	CHD6	99	81.319	Cercocebus_atys
ENSHBUG00000014701	chd6	65	73.295	ENSCLAG00000013743	CHD6	77	72.351	Chinchilla_lanigera
ENSHBUG00000014701	chd6	65	73.419	ENSCSAG00000013997	CHD6	78	72.153	Chlorocebus_sabaeus
ENSHBUG00000014701	chd6	55	73.705	ENSCHOG00000012647	CHD6	68	73.770	Choloepus_hoffmanni
ENSHBUG00000014701	chd6	64	76.225	ENSCPBG00000019382	CHD6	79	74.183	Chrysemys_picta_bellii
ENSHBUG00000014701	chd6	65	73.227	ENSCANG00000043435	CHD6	99	81.319	Colobus_angolensis_palliatus
ENSHBUG00000014701	chd6	63	75.200	ENSCGRG00001002694	Chd6	74	75.067	Cricetulus_griseus_chok1gshd
ENSHBUG00000014701	chd6	84	70.258	ENSDARG00000017244	chd6	90	70.895	Danio_rerio
ENSHBUG00000014701	chd6	63	75.685	ENSDNOG00000004176	CHD6	78	72.180	Dasypus_novemcinctus
ENSHBUG00000014701	chd6	60	80.857	ENSEASG00005023433	CHD6	95	85.356	Equus_asinus_asinus
ENSHBUG00000014701	chd6	70	68.665	ENSECAG00000011761	CHD6	77	72.567	Equus_caballus
ENSHBUG00000014701	chd6	64	77.918	ENSELUG00000012309	chd6	91	81.147	Esox_lucius
ENSHBUG00000014701	chd6	68	71.875	ENSFCAG00000003572	CHD6	80	72.278	Felis_catus
ENSHBUG00000014701	chd6	59	85.714	ENSFALG00000012563	CHD6	73	75.944	Ficedula_albicollis
ENSHBUG00000014701	chd6	64	73.961	ENSFDAG00000013791	CHD6	77	72.913	Fukomys_damarensis
ENSHBUG00000014701	chd6	63	83.492	ENSGMOG00000011715	chd6	89	83.492	Gadus_morhua
ENSHBUG00000014701	chd6	76	84.579	ENSGACG00000000037	chd6	99	79.890	Gasterosteus_aculeatus
ENSHBUG00000014701	chd6	65	73.482	ENSGGOG00000013123	CHD6	99	81.319	Gorilla_gorilla
ENSHBUG00000014701	chd6	66	71.517	ENSHGLG00000004548	CHD6	77	72.128	Heterocephalus_glaber_female
ENSHBUG00000014701	chd6	66	71.517	ENSHGLG00100006401	CHD6	77	72.128	Heterocephalus_glaber_male
ENSHBUG00000014701	chd6	75	79.851	ENSIPUG00000003692	chd6	83	79.851	Ictalurus_punctatus
ENSHBUG00000014701	chd6	64	74.012	ENSSTOG00000013382	CHD6	77	72.028	Ictidomys_tridecemlineatus
ENSHBUG00000014701	chd6	62	76.810	ENSLACG00000010881	CHD6	75	76.225	Latimeria_chalumnae
ENSHBUG00000014701	chd6	62	79.674	ENSLOCG00000007386	chd6	85	71.726	Lepisosteus_oculatus
ENSHBUG00000014701	chd6	62	77.013	ENSLAFG00000012144	CHD6	78	72.533	Loxodonta_africana
ENSHBUG00000014701	chd6	65	73.419	ENSMFAG00000032830	CHD6	99	81.319	Macaca_fascicularis
ENSHBUG00000014701	chd6	65	73.419	ENSMMUG00000020458	CHD6	99	81.319	Macaca_mulatta
ENSHBUG00000014701	chd6	65	73.419	ENSMNEG00000040847	CHD6	99	81.319	Macaca_nemestrina
ENSHBUG00000014701	chd6	65	73.419	ENSMLEG00000031965	CHD6	99	81.319	Mandrillus_leucophaeus
ENSHBUG00000014701	chd6	99	85.205	ENSMAMG00000013111	chd6	99	85.428	Mastacembelus_armatus
ENSHBUG00000014701	chd6	64	75.787	ENSMGAG00000001121	CHD6	78	72.212	Meleagris_gallopavo
ENSHBUG00000014701	chd6	62	76.944	ENSMICG00000016641	CHD6	99	81.136	Microcebus_murinus
ENSHBUG00000014701	chd6	61	77.386	ENSMODG00000000720	-	78	77.386	Monodelphis_domestica
ENSHBUG00000014701	chd6	65	72.797	MGP_CAROLIEiJ_G0024604	Chd6	92	78.403	Mus_caroli
ENSHBUG00000014701	chd6	65	72.861	ENSMUSG00000057133	Chd6	92	78.565	Mus_musculus
ENSHBUG00000014701	chd6	63	75.862	MGP_PahariEiJ_G0026048	Chd6	92	78.221	Mus_pahari
ENSHBUG00000014701	chd6	65	72.861	MGP_SPRETEiJ_G0025526	Chd6	92	78.565	Mus_spretus
ENSHBUG00000014701	chd6	65	73.057	ENSMPUG00000017695	CHD6	77	72.170	Mustela_putorius_furo
ENSHBUG00000014701	chd6	66	71.928	ENSMLUG00000016247	CHD6	75	71.875	Myotis_lucifugus
ENSHBUG00000014701	chd6	83	98.394	ENSNBRG00000013839	chd6	99	93.900	Neolamprologus_brichardi
ENSHBUG00000014701	chd6	65	72.204	ENSNLEG00000006496	CHD6	77	71.213	Nomascus_leucogenys
ENSHBUG00000014701	chd6	65	71.192	ENSOPRG00000013376	-	76	71.064	Ochotona_princeps
ENSHBUG00000014701	chd6	85	94.737	ENSONIG00000000393	chd6	99	88.330	Oreochromis_niloticus
ENSHBUG00000014701	chd6	56	74.106	ENSOANG00000014347	CHD6	68	71.124	Ornithorhynchus_anatinus
ENSHBUG00000014701	chd6	62	76.875	ENSOCUG00000012394	CHD6	77	72.090	Oryctolagus_cuniculus
ENSHBUG00000014701	chd6	99	73.594	ENSORLG00020021891	chd6	95	94.589	Oryzias_latipes_hni
ENSHBUG00000014701	chd6	60	80.357	ENSOGAG00000002427	CHD6	68	80.357	Otolemur_garnettii
ENSHBUG00000014701	chd6	64	74.032	ENSOARG00000002597	CHD6	77	70.110	Ovis_aries
ENSHBUG00000014701	chd6	68	71.875	ENSPPRG00000014756	CHD6	80	72.340	Panthera_pardus
ENSHBUG00000014701	chd6	68	71.875	ENSPTIG00000011094	CHD6	77	72.153	Panthera_tigris_altaica
ENSHBUG00000014701	chd6	65	73.482	ENSPTRG00000013504	CHD6	99	81.319	Pan_troglodytes
ENSHBUG00000014701	chd6	65	73.419	ENSPANG00000025554	CHD6	99	81.319	Papio_anubis
ENSHBUG00000014701	chd6	75	72.388	ENSPKIG00000005578	chd6	87	72.480	Paramormyrops_kingsleyae
ENSHBUG00000014701	chd6	77	79.916	ENSPMGG00000014877	chd6	96	78.709	Periophthalmus_magnuspinnatus
ENSHBUG00000014701	chd6	64	75.432	ENSPCIG00000028037	CHD6	77	72.418	Phascolarctos_cinereus
ENSHBUG00000014701	chd6	97	77.433	ENSPLAG00000003128	chd6	99	77.634	Poecilia_latipinna
ENSHBUG00000014701	chd6	97	77.023	ENSPREG00000022653	chd6	99	94.872	Poecilia_reticulata
ENSHBUG00000014701	chd6	65	73.419	ENSPPYG00000011016	CHD6	77	72.226	Pongo_abelii
ENSHBUG00000014701	chd6	62	76.944	ENSPCOG00000001089	CHD6	99	81.319	Propithecus_coquereli
ENSHBUG00000014701	chd6	84	98.793	ENSPNYG00000022516	chd6	99	94.233	Pundamilia_nyererei
ENSHBUG00000014701	chd6	77	72.609	ENSPNAG00000012825	chd6	85	74.110	Pygocentrus_nattereri
ENSHBUG00000014701	chd6	61	75.862	ENSRNOG00000016744	Chd6	77	71.572	Rattus_norvegicus
ENSHBUG00000014701	chd6	65	73.239	ENSSBOG00000022089	CHD6	99	81.319	Saimiri_boliviensis_boliviensis
ENSHBUG00000014701	chd6	66	75.050	ENSSHAG00000017072	CHD6	77	72.073	Sarcophilus_harrisii
ENSHBUG00000014701	chd6	76	70.122	ENSSFOG00015012920	chd6	88	87.339	Scleropages_formosus
ENSHBUG00000014701	chd6	65	73.610	ENSSSCG00000007360	CHD6	76	72.403	Sus_scrofa
ENSHBUG00000014701	chd6	67	72.558	ENSTGUG00000003179	CHD6	81	71.798	Taeniopygia_guttata
ENSHBUG00000014701	chd6	75	84.676	ENSTNIG00000017487	chd6	99	84.066	Tetraodon_nigroviridis
ENSHBUG00000014701	chd6	60	82.982	ENSTTRG00000013438	CHD6	75	76.604	Tursiops_truncatus
ENSHBUG00000014701	chd6	61	80.405	ENSUAMG00000024036	CHD6	95	83.815	Ursus_americanus
ENSHBUG00000014701	chd6	65	73.419	ENSUMAG00000002017	CHD6	95	83.815	Ursus_maritimus
ENSHBUG00000014701	chd6	58	70.007	ENSVPAG00000007941	CHD6	71	66.574	Vicugna_pacos
ENSHBUG00000014701	chd6	65	73.355	ENSVVUG00000029164	CHD6	78	72.153	Vulpes_vulpes
ENSHBUG00000014701	chd6	64	68.225	ENSXETG00000021445	chd6	78	64.059	Xenopus_tropicalis