EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000015576 (Gene tree)
Gene ID: 102299456
Gene Symbol: -
Alias: -
Full Name: serine/arginine-rich splicing factor 1B
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 9517 bases
Position: chrJH425773.1:241197-250713
Accession: 102299456
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000013781	RRM_1	PF00076.22	1.7e-33	1	2
ENSHBUP00000013781	RRM_1	PF00076.22	1.7e-33	2	2
ENSHBUP00000030500	RRM_1	PF00076.22	6.6e-33	1	2
ENSHBUP00000030500	RRM_1	PF00076.22	6.6e-33	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000021623	-	783	XM_005945366	ENSHBUP00000013781	260 (aa)	XP_005945428	UPI0003BDB931
ENSHBUT00000021618	-	1226	-	ENSHBUP00000030500	250 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000015576's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000015576's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000015576	-	81	45.794	ENSHBUG00000014048	srsf5a	74	46.983
ENSHBUG00000015576	-	77	66.667	ENSHBUG00000019320	srsf9	72	68.817
ENSHBUG00000015576	-	80	83.000	ENSHBUG00000016788	srsf1a	83	82.039
ENSHBUG00000015576	-	68	45.977	ENSHBUG00000011326	-	51	43.750
ENSHBUG00000015576	-	52	61.832	ENSHBUG00000015600	-	92	57.037
ENSHBUG00000015576	-	91	42.917	ENSHBUG00000006386	-	57	41.361
ENSHBUG00000015576	-	67	50.867	ENSHBUG00000012462	srsf5b	91	49.231

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000015576	-	76	94.211	ENSACIG00000002623	-	96	95.263	Amphilophus_citrinellus
ENSHBUG00000015576	-	80	83.000	ENSACLG00000005676	-	80	82.039	Astatotilapia_calliptera
ENSHBUG00000015576	-	100	99.617	ENSACLG00000021693	-	100	99.617	Astatotilapia_calliptera
ENSHBUG00000015576	-	77	58.974	WBGene00004700	rsp-3	75	64.103	Caenorhabditis_elegans
ENSHBUG00000015576	-	73	53.968	ENSCING00000000257	-	79	59.028	Ciona_intestinalis
ENSHBUG00000015576	-	76	68.783	ENSCING00000007375	-	76	68.783	Ciona_intestinalis
ENSHBUG00000015576	-	69	55.000	ENSCSAVG00000003567	-	80	56.643	Ciona_savignyi
ENSHBUG00000015576	-	76	68.254	ENSCSAVG00000006093	-	91	68.254	Ciona_savignyi
ENSHBUG00000015576	-	76	66.138	FBgn0283477	SF2	73	67.196	Drosophila_melanogaster
ENSHBUG00000015576	-	99	69.758	ENSEBUG00000009582	-	96	69.874	Eptatretus_burgeri
ENSHBUG00000015576	-	78	93.564	ENSFHEG00000017425	-	98	92.632	Fundulus_heteroclitus
ENSHBUG00000015576	-	78	81.959	ENSGMOG00000010606	-	97	85.263	Gadus_morhua
ENSHBUG00000015576	-	80	84.000	ENSGAFG00000012721	-	80	83.010	Gambusia_affinis
ENSHBUG00000015576	-	82	90.777	ENSGAFG00000000609	-	93	93.617	Gambusia_affinis
ENSHBUG00000015576	-	75	83.422	ENSGACG00000011094	-	96	84.492	Gasterosteus_aculeatus
ENSHBUG00000015576	-	80	79.310	ENSHCOG00000008016	-	80	78.947	Hippocampus_comes
ENSHBUG00000015576	-	95	81.275	ENSMFAG00000034223	-	79	80.913	Macaca_fascicularis
ENSHBUG00000015576	-	100	99.615	ENSMZEG00005019071	-	100	99.615	Maylandia_zebra
ENSHBUG00000015576	-	80	83.000	ENSMZEG00005007947	-	80	82.039	Maylandia_zebra
ENSHBUG00000015576	-	81	85.714	ENSMMOG00000018849	-	93	84.937	Mola_mola
ENSHBUG00000015576	-	80	83.000	ENSNBRG00000019981	-	80	82.039	Neolamprologus_brichardi
ENSHBUG00000015576	-	100	99.617	ENSNBRG00000008134	-	100	99.617	Neolamprologus_brichardi
ENSHBUG00000015576	-	70	64.205	ENSOPRG00000004745	-	98	64.205	Ochotona_princeps
ENSHBUG00000015576	-	96	98.413	ENSONIG00000004857	-	99	98.413	Oreochromis_niloticus
ENSHBUG00000015576	-	52	86.957	ENSOANG00000007320	-	78	83.333	Ornithorhynchus_anatinus
ENSHBUG00000015576	-	72	52.514	ENSOCUG00000026856	-	96	54.190	Oryctolagus_cuniculus
ENSHBUG00000015576	-	100	94.231	ENSORLG00000005314	-	99	94.231	Oryzias_latipes
ENSHBUG00000015576	-	100	94.231	ENSORLG00015015497	-	99	94.231	Oryzias_latipes_hsok
ENSHBUG00000015576	-	100	96.154	ENSOMEG00000017711	-	98	96.154	Oryzias_melastigma
ENSHBUG00000015576	-	75	84.492	ENSPLAG00000019613	-	71	84.492	Poecilia_latipinna
ENSHBUG00000015576	-	80	82.266	ENSPLAG00000019553	-	92	82.723	Poecilia_latipinna
ENSHBUG00000015576	-	82	89.806	ENSPREG00000016792	-	93	92.766	Poecilia_reticulata
ENSHBUG00000015576	-	100	99.617	ENSPNYG00000020651	-	100	99.617	Pundamilia_nyererei
ENSHBUG00000015576	-	80	83.000	ENSPNYG00000017115	-	80	82.039	Pundamilia_nyererei
ENSHBUG00000015576	-	82	89.202	ENSSFOG00015004989	-	71	87.065	Scleropages_formosus
ENSHBUG00000015576	-	80	89.952	ENSSDUG00000003887	-	92	90.871	Seriola_dumerili
ENSHBUG00000015576	-	81	80.788	ENSTRUG00000017058	-	94	79.079	Takifugu_rubripes
ENSHBUG00000015576	-	81	77.941	ENSTNIG00000009993	-	94	76.667	Tetraodon_nigroviridis
ENSHBUG00000015576	-	82	90.291	ENSXCOG00000017888	-	93	93.191	Xiphophorus_couchianus
ENSHBUG00000015576	-	80	82.266	ENSXCOG00000009643	-	80	83.168	Xiphophorus_couchianus
ENSHBUG00000015576	-	82	90.291	ENSXMAG00000010797	-	93	93.191	Xiphophorus_maculatus