EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000015737 (Gene tree)
Gene ID: -
Gene Symbol: R3HDM1
Alias: -
Full Name: R3H domain-containing protein 1-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 36694 bases
Position: chrJH425485.1:407646-444339
Accession: 102314604
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000030588	R3H	PF01424.22	1.1e-12	1	1
ENSHBUP00000030597	R3H	PF01424.22	1.1e-12	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000033148	R3HDM1-202	2090	-	ENSHBUP00000030588	558 (aa)	-	-
ENSHBUT00000021771	R3HDM1-201	2581	XM_014337322	ENSHBUP00000030597	558 (aa)	XP_014192808	-

Gene Model

Click here to download ENSHBUG00000015737's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000015737's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000015737	R3HDM1	66	50.000	ENSHBUG00000018525	-	53	50.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000015737	R3HDM1	90	58.206	ENSG00000048991	R3HDM1	99	61.667	Homo_sapiens
ENSHBUG00000015737	R3HDM1	96	91.264	ENSAPOG00000020850	r3hdm1	50	89.963	Acanthochromis_polyacanthus
ENSHBUG00000015737	R3HDM1	85	80.421	ENSACIG00000018791	-	94	80.421	Amphilophus_citrinellus
ENSHBUG00000015737	R3HDM1	96	91.264	ENSAOCG00000005192	r3hdm1	51	91.264	Amphiprion_ocellaris
ENSHBUG00000015737	R3HDM1	99	82.459	ENSAPEG00000016108	r3hdm1	53	82.310	Amphiprion_percula
ENSHBUG00000015737	R3HDM1	96	81.784	ENSATEG00000000232	r3hdm1	52	81.784	Anabas_testudineus
ENSHBUG00000015737	R3HDM1	96	93.284	ENSACLG00000027282	r3hdm1	52	93.284	Astatotilapia_calliptera
ENSHBUG00000015737	R3HDM1	88	38.171	ENSAMXG00000020587	arpp21	59	38.933	Astyanax_mexicanus
ENSHBUG00000015737	R3HDM1	90	58.654	ENSCAFG00020016119	R3HDM1	99	56.553	Canis_lupus_dingo
ENSHBUG00000015737	R3HDM1	52	51.974	ENSCAPG00000013043	-	100	51.974	Cavia_aperea
ENSHBUG00000015737	R3HDM1	90	56.333	ENSCPOG00000012784	R3HDM1	100	59.868	Cavia_porcellus
ENSHBUG00000015737	R3HDM1	90	57.170	ENSCLAG00000007962	R3HDM1	100	61.538	Chinchilla_lanigera
ENSHBUG00000015737	R3HDM1	90	58.015	ENSCGRG00000012080	R3hdm1	100	62.876	Cricetulus_griseus_crigri
ENSHBUG00000015737	R3HDM1	96	72.842	ENSCSEG00000008944	r3hdm1	55	71.678	Cynoglossus_semilaevis
ENSHBUG00000015737	R3HDM1	99	80.360	ENSCVAG00000007582	r3hdm1	55	80.396	Cyprinodon_variegatus
ENSHBUG00000015737	R3HDM1	52	62.542	ENSDORG00000027689	-	100	62.207	Dipodomys_ordii
ENSHBUG00000015737	R3HDM1	80	49.049	ENSEBUG00000014746	arpp21	66	49.465	Eptatretus_burgeri
ENSHBUG00000015737	R3HDM1	90	59.238	ENSFDAG00000016478	R3HDM1	100	62.876	Fukomys_damarensis
ENSHBUG00000015737	R3HDM1	96	82.375	ENSFHEG00000018713	r3hdm1	57	82.375	Fundulus_heteroclitus
ENSHBUG00000015737	R3HDM1	99	72.924	ENSGAFG00000006203	r3hdm1	53	72.924	Gambusia_affinis
ENSHBUG00000015737	R3HDM1	90	58.994	ENSGGOG00000008156	R3HDM1	53	59.195	Gorilla_gorilla
ENSHBUG00000015737	R3HDM1	90	58.700	ENSHGLG00000015718	R3HDM1	100	62.252	Heterocephalus_glaber_female
ENSHBUG00000015737	R3HDM1	90	59.203	ENSHGLG00100003184	-	100	62.914	Heterocephalus_glaber_male
ENSHBUG00000015737	R3HDM1	96	69.145	ENSHCOG00000013366	r3hdm1	88	75.430	Hippocampus_comes
ENSHBUG00000015737	R3HDM1	59	50.000	ENSIPUG00000020552	arpp21	50	41.297	Ictalurus_punctatus
ENSHBUG00000015737	R3HDM1	91	57.280	ENSIPUG00000001676	R3HDM1	52	56.705	Ictalurus_punctatus
ENSHBUG00000015737	R3HDM1	90	58.206	ENSSTOG00000007572	R3HDM1	100	62.876	Ictidomys_tridecemlineatus
ENSHBUG00000015737	R3HDM1	52	63.211	ENSJJAG00000018208	-	100	63.211	Jaculus_jaculus
ENSHBUG00000015737	R3HDM1	55	82.500	ENSKMAG00000013373	-	91	82.500	Kryptolebias_marmoratus
ENSHBUG00000015737	R3HDM1	87	81.930	ENSLBEG00000027981	-	99	81.930	Labrus_bergylta
ENSHBUG00000015737	R3HDM1	96	87.175	ENSMAMG00000004532	r3hdm1	55	85.199	Mastacembelus_armatus
ENSHBUG00000015737	R3HDM1	96	100.000	ENSMZEG00005003157	r3hdm1	54	100.000	Maylandia_zebra
ENSHBUG00000015737	R3HDM1	90	58.015	ENSMAUG00000010315	R3hdm1	100	62.876	Mesocricetus_auratus
ENSHBUG00000015737	R3HDM1	90	58.175	ENSMOCG00000019833	-	100	62.542	Microtus_ochrogaster
ENSHBUG00000015737	R3HDM1	90	58.015	MGP_CAROLIEiJ_G0014543	R3hdm1	100	62.876	Mus_caroli
ENSHBUG00000015737	R3HDM1	90	58.015	ENSMUSG00000056211	R3hdm1	100	62.876	Mus_musculus
ENSHBUG00000015737	R3HDM1	90	57.634	MGP_PahariEiJ_G0027779	R3hdm1	100	63.211	Mus_pahari
ENSHBUG00000015737	R3HDM1	90	58.015	MGP_SPRETEiJ_G0015350	R3hdm1	100	62.876	Mus_spretus
ENSHBUG00000015737	R3HDM1	52	62.171	ENSNGAG00000001313	-	100	62.171	Nannospalax_galili
ENSHBUG00000015737	R3HDM1	90	46.552	ENSMEUG00000011784	R3HDM1	52	46.743	Notamacropus_eugenii
ENSHBUG00000015737	R3HDM1	91	56.742	ENSODEG00000008607	R3HDM1	100	62.207	Octodon_degus
ENSHBUG00000015737	R3HDM1	90	57.634	ENSOCUG00000017366	R3HDM1	50	58.397	Oryctolagus_cuniculus
ENSHBUG00000015737	R3HDM1	92	82.046	ENSORLG00000004297	r3hdm1	51	81.871	Oryzias_latipes
ENSHBUG00000015737	R3HDM1	73	80.872	ENSORLG00020019252	-	93	82.872	Oryzias_latipes_hni
ENSHBUG00000015737	R3HDM1	92	82.046	ENSORLG00015017355	r3hdm1	56	78.919	Oryzias_latipes_hsok
ENSHBUG00000015737	R3HDM1	96	80.000	ENSOMEG00000003882	-	96	81.503	Oryzias_melastigma
ENSHBUG00000015737	R3HDM1	80	60.706	ENSPKIG00000011224	R3HDM1	90	60.396	Paramormyrops_kingsleyae
ENSHBUG00000015737	R3HDM1	90	57.495	ENSPSIG00000012915	R3HDM1	50	56.560	Pelodiscus_sinensis
ENSHBUG00000015737	R3HDM1	80	72.483	ENSPMGG00000011264	-	93	72.260	Periophthalmus_magnuspinnatus
ENSHBUG00000015737	R3HDM1	90	57.634	ENSPEMG00000015187	R3hdm1	100	63.211	Peromyscus_maniculatus_bairdii
ENSHBUG00000015737	R3HDM1	96	81.101	ENSPFOG00000015036	r3hdm1	52	81.101	Poecilia_formosa
ENSHBUG00000015737	R3HDM1	99	73.703	ENSPLAG00000018042	r3hdm1	53	73.393	Poecilia_latipinna
ENSHBUG00000015737	R3HDM1	99	73.524	ENSPMEG00000023947	r3hdm1	53	72.857	Poecilia_mexicana
ENSHBUG00000015737	R3HDM1	99	79.428	ENSPREG00000007902	r3hdm1	96	79.482	Poecilia_reticulata
ENSHBUG00000015737	R3HDM1	72	98.756	ENSPNYG00000008701	-	99	98.756	Pundamilia_nyererei
ENSHBUG00000015737	R3HDM1	71	45.266	ENSPNAG00000004162	arpp21	50	51.550	Pygocentrus_nattereri
ENSHBUG00000015737	R3HDM1	97	55.556	ENSSFOG00015019851	-	55	55.842	Scleropages_formosus
ENSHBUG00000015737	R3HDM1	99	87.906	ENSSDUG00000010749	r3hdm1	54	87.906	Seriola_dumerili
ENSHBUG00000015737	R3HDM1	99	89.531	ENSSPAG00000004648	r3hdm1	56	89.531	Stegastes_partitus
ENSHBUG00000015737	R3HDM1	96	75.000	ENSTRUG00000011654	r3hdm1	53	75.000	Takifugu_rubripes
ENSHBUG00000015737	R3HDM1	91	79.502	ENSTNIG00000010362	r3hdm1	55	79.502	Tetraodon_nigroviridis
ENSHBUG00000015737	R3HDM1	90	58.397	ENSUAMG00000024806	R3HDM1	99	56.631	Ursus_americanus
ENSHBUG00000015737	R3HDM1	83	79.362	ENSXCOG00000017448	r3hdm1	59	79.787	Xiphophorus_couchianus
ENSHBUG00000015737	R3HDM1	96	79.667	ENSXMAG00000007885	r3hdm1	52	80.037	Xiphophorus_maculatus