EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000016787 (Gene tree)
Gene ID: 102307110
Gene Symbol: trub1
Alias: zgc:195155
Full Name: TruB pseudouridine synthase family member 1
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Plus strand
Length: 5383 bases
Position: chrJH426046.1:151352-156734
Accession: 102307110
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000014918	TruB_N	PF01509.18	3e-46	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000023080	-	837	XM_005949634	ENSHBUP00000014918	278 (aa)	XP_005949696	UPI0003BD92A5

Gene Model

Click here to download ENSHBUG00000016787's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000016787's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000016787	trub1	71	32.000	ENSHBUG00000022384	trub2	60	32.000

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000016787	trub1	91	67.063	ENSG00000165832	TRUB1	72	67.063	Homo_sapiens
ENSHBUG00000016787	trub1	94	90.458	ENSAPOG00000020565	trub1	99	88.971	Acanthochromis_polyacanthus
ENSHBUG00000016787	trub1	91	66.929	ENSAMEG00000014931	TRUB1	72	66.929	Ailuropoda_melanoleuca
ENSHBUG00000016787	trub1	99	83.755	ENSACIG00000003060	trub1	93	83.755	Amphilophus_citrinellus
ENSHBUG00000016787	trub1	94	89.313	ENSAOCG00000017188	trub1	99	87.500	Amphiprion_ocellaris
ENSHBUG00000016787	trub1	94	89.695	ENSAPEG00000015209	trub1	99	87.868	Amphiprion_percula
ENSHBUG00000016787	trub1	88	88.571	ENSATEG00000023291	trub1	88	88.571	Anabas_testudineus
ENSHBUG00000016787	trub1	94	67.433	ENSAPLG00000006808	TRUB1	93	67.433	Anas_platyrhynchos
ENSHBUG00000016787	trub1	88	66.939	ENSACAG00000009282	TRUB1	88	66.939	Anolis_carolinensis
ENSHBUG00000016787	trub1	91	67.063	ENSANAG00000022870	TRUB1	72	67.063	Aotus_nancymaae
ENSHBUG00000016787	trub1	100	98.561	ENSACLG00000000823	trub1	100	98.561	Astatotilapia_calliptera
ENSHBUG00000016787	trub1	94	73.946	ENSAMXG00000015845	trub1	87	73.946	Astyanax_mexicanus
ENSHBUG00000016787	trub1	91	67.857	ENSBTAG00000012955	TRUB1	72	67.857	Bos_taurus
ENSHBUG00000016787	trub1	91	67.063	ENSCJAG00000047815	TRUB1	72	67.063	Callithrix_jacchus
ENSHBUG00000016787	trub1	91	67.460	ENSCAFG00000011688	TRUB1	72	67.460	Canis_familiaris
ENSHBUG00000016787	trub1	91	67.460	ENSCAFG00020013237	TRUB1	72	67.460	Canis_lupus_dingo
ENSHBUG00000016787	trub1	91	67.460	ENSCHIG00000020884	TRUB1	75	67.460	Capra_hircus
ENSHBUG00000016787	trub1	91	66.270	ENSTSYG00000000446	TRUB1	72	66.270	Carlito_syrichta
ENSHBUG00000016787	trub1	78	60.550	ENSCAPG00000017088	TRUB1	85	60.550	Cavia_aperea
ENSHBUG00000016787	trub1	71	61.000	ENSCPOG00000030129	-	78	61.000	Cavia_porcellus
ENSHBUG00000016787	trub1	66	65.027	ENSCPOG00000040236	-	75	65.027	Cavia_porcellus
ENSHBUG00000016787	trub1	91	67.063	ENSCCAG00000028842	TRUB1	72	67.063	Cebus_capucinus
ENSHBUG00000016787	trub1	91	67.063	ENSCATG00000033431	TRUB1	72	67.063	Cercocebus_atys
ENSHBUG00000016787	trub1	71	61.735	ENSCLAG00000008664	TRUB1	81	61.616	Chinchilla_lanigera
ENSHBUG00000016787	trub1	91	67.063	ENSCSAG00000004891	TRUB1	72	67.063	Chlorocebus_sabaeus
ENSHBUG00000016787	trub1	87	60.331	ENSCHOG00000011931	TRUB1	70	60.331	Choloepus_hoffmanni
ENSHBUG00000016787	trub1	88	71.020	ENSCPBG00000003051	TRUB1	84	71.020	Chrysemys_picta_bellii
ENSHBUG00000016787	trub1	91	67.063	ENSCANG00000029445	TRUB1	72	67.063	Colobus_angolensis_palliatus
ENSHBUG00000016787	trub1	90	58.730	ENSCGRG00001010322	-	69	57.915	Cricetulus_griseus_chok1gshd
ENSHBUG00000016787	trub1	81	66.814	ENSCGRG00001016772	-	90	59.273	Cricetulus_griseus_chok1gshd
ENSHBUG00000016787	trub1	88	66.939	ENSCGRG00000010806	Trub1	77	65.873	Cricetulus_griseus_crigri
ENSHBUG00000016787	trub1	95	77.186	ENSCSEG00000011261	trub1	87	76.208	Cynoglossus_semilaevis
ENSHBUG00000016787	trub1	91	81.102	ENSCVAG00000008791	trub1	78	81.102	Cyprinodon_variegatus
ENSHBUG00000016787	trub1	97	69.853	ENSDARG00000053805	trub1	99	82.353	Danio_rerio
ENSHBUG00000016787	trub1	91	65.079	ENSDNOG00000001069	TRUB1	72	65.079	Dasypus_novemcinctus
ENSHBUG00000016787	trub1	88	66.939	ENSDORG00000010431	Trub1	73	65.873	Dipodomys_ordii
ENSHBUG00000016787	trub1	69	64.234	ENSETEG00000009183	TRUB1	59	60.526	Echinops_telfairi
ENSHBUG00000016787	trub1	91	66.667	ENSEASG00005014739	TRUB1	72	66.667	Equus_asinus_asinus
ENSHBUG00000016787	trub1	91	66.667	ENSECAG00000007177	TRUB1	72	66.667	Equus_caballus
ENSHBUG00000016787	trub1	93	58.015	ENSEEUG00000013993	TRUB1	77	56.679	Erinaceus_europaeus
ENSHBUG00000016787	trub1	92	78.824	ENSELUG00000000502	trub1	89	78.824	Esox_lucius
ENSHBUG00000016787	trub1	95	64.906	ENSFCAG00000031927	TRUB1	77	64.794	Felis_catus
ENSHBUG00000016787	trub1	83	65.272	ENSFALG00000002232	TRUB1	92	65.272	Ficedula_albicollis
ENSHBUG00000016787	trub1	71	62.755	ENSFDAG00000008140	TRUB1	80	62.755	Fukomys_damarensis
ENSHBUG00000016787	trub1	98	82.353	ENSFHEG00000004016	trub1	93	82.353	Fundulus_heteroclitus
ENSHBUG00000016787	trub1	94	65.900	ENSGALG00000009091	TRUB1	92	65.900	Gallus_gallus
ENSHBUG00000016787	trub1	92	82.812	ENSGAFG00000009193	trub1	89	81.641	Gambusia_affinis
ENSHBUG00000016787	trub1	72	88.945	ENSGACG00000015387	trub1	98	88.945	Gasterosteus_aculeatus
ENSHBUG00000016787	trub1	93	68.217	ENSGAGG00000009758	TRUB1	74	68.217	Gopherus_agassizii
ENSHBUG00000016787	trub1	91	67.063	ENSGGOG00000004583	TRUB1	72	67.063	Gorilla_gorilla
ENSHBUG00000016787	trub1	95	63.636	ENSHGLG00000015314	TRUB1	77	63.296	Heterocephalus_glaber_female
ENSHBUG00000016787	trub1	70	62.564	ENSHGLG00100009183	TRUB1	84	62.121	Heterocephalus_glaber_male
ENSHBUG00000016787	trub1	96	83.835	ENSHCOG00000017877	trub1	96	83.835	Hippocampus_comes
ENSHBUG00000016787	trub1	94	73.563	ENSIPUG00000017559	trub1	91	73.563	Ictalurus_punctatus
ENSHBUG00000016787	trub1	91	67.063	ENSSTOG00000003641	TRUB1	75	67.063	Ictidomys_tridecemlineatus
ENSHBUG00000016787	trub1	91	65.079	ENSJJAG00000011800	Trub1	74	65.079	Jaculus_jaculus
ENSHBUG00000016787	trub1	98	84.926	ENSKMAG00000006232	trub1	98	84.926	Kryptolebias_marmoratus
ENSHBUG00000016787	trub1	98	84.249	ENSLBEG00000026722	trub1	95	84.249	Labrus_bergylta
ENSHBUG00000016787	trub1	96	69.776	ENSLACG00000014885	TRUB1	89	69.776	Latimeria_chalumnae
ENSHBUG00000016787	trub1	94	75.954	ENSLOCG00000012979	trub1	88	75.954	Lepisosteus_oculatus
ENSHBUG00000016787	trub1	91	67.063	ENSLAFG00000015452	TRUB1	75	65.649	Loxodonta_africana
ENSHBUG00000016787	trub1	91	67.063	ENSMFAG00000031767	TRUB1	72	67.063	Macaca_fascicularis
ENSHBUG00000016787	trub1	91	67.063	ENSMMUG00000001902	TRUB1	72	67.063	Macaca_mulatta
ENSHBUG00000016787	trub1	91	61.905	ENSMNEG00000044646	TRUB1	71	62.302	Macaca_nemestrina
ENSHBUG00000016787	trub1	91	67.063	ENSMLEG00000042655	TRUB1	72	67.063	Mandrillus_leucophaeus
ENSHBUG00000016787	trub1	100	98.201	ENSMZEG00005024095	trub1	100	98.201	Maylandia_zebra
ENSHBUG00000016787	trub1	94	66.667	ENSMGAG00000011135	TRUB1	90	66.667	Meleagris_gallopavo
ENSHBUG00000016787	trub1	91	63.492	ENSMAUG00000011101	Trub1	76	62.548	Mesocricetus_auratus
ENSHBUG00000016787	trub1	91	66.667	ENSMICG00000016324	TRUB1	72	66.667	Microcebus_murinus
ENSHBUG00000016787	trub1	90	65.873	ENSMOCG00000017759	Trub1	85	61.837	Microtus_ochrogaster
ENSHBUG00000016787	trub1	88	68.852	ENSMODG00000009676	TRUB1	71	65.900	Monodelphis_domestica
ENSHBUG00000016787	trub1	89	66.532	MGP_CAROLIEiJ_G0023100	Trub1	80	64.141	Mus_caroli
ENSHBUG00000016787	trub1	89	65.726	ENSMUSG00000025086	Trub1	82	62.069	Mus_musculus
ENSHBUG00000016787	trub1	91	65.079	MGP_PahariEiJ_G0014588	Trub1	75	65.079	Mus_pahari
ENSHBUG00000016787	trub1	89	65.726	MGP_SPRETEiJ_G0024021	Trub1	82	62.069	Mus_spretus
ENSHBUG00000016787	trub1	91	67.460	ENSMPUG00000003556	TRUB1	72	67.460	Mustela_putorius_furo
ENSHBUG00000016787	trub1	93	65.134	ENSMLUG00000017686	TRUB1	77	65.134	Myotis_lucifugus
ENSHBUG00000016787	trub1	91	66.270	ENSNGAG00000018682	Trub1	72	66.270	Nannospalax_galili
ENSHBUG00000016787	trub1	94	95.817	ENSNBRG00000023393	trub1	94	95.817	Neolamprologus_brichardi
ENSHBUG00000016787	trub1	91	67.063	ENSNLEG00000016345	TRUB1	72	67.063	Nomascus_leucogenys
ENSHBUG00000016787	trub1	72	69.652	ENSMEUG00000006603	TRUB1	77	67.788	Notamacropus_eugenii
ENSHBUG00000016787	trub1	93	64.885	ENSOPRG00000009371	TRUB1	76	64.885	Ochotona_princeps
ENSHBUG00000016787	trub1	96	62.030	ENSODEG00000010854	TRUB1	77	62.172	Octodon_degus
ENSHBUG00000016787	trub1	99	95.273	ENSONIG00000007249	trub1	100	95.273	Oreochromis_niloticus
ENSHBUG00000016787	trub1	92	66.406	ENSOANG00000001556	TRUB1	88	64.794	Ornithorhynchus_anatinus
ENSHBUG00000016787	trub1	91	66.270	ENSOCUG00000009456	TRUB1	77	63.296	Oryctolagus_cuniculus
ENSHBUG00000016787	trub1	99	81.455	ENSORLG00000029719	trub1	98	81.455	Oryzias_latipes
ENSHBUG00000016787	trub1	99	81.091	ENSORLG00020016767	trub1	97	81.091	Oryzias_latipes_hni
ENSHBUG00000016787	trub1	99	81.091	ENSORLG00015014728	trub1	98	81.091	Oryzias_latipes_hsok
ENSHBUG00000016787	trub1	93	83.398	ENSOMEG00000014556	trub1	91	83.398	Oryzias_melastigma
ENSHBUG00000016787	trub1	91	67.063	ENSOGAG00000015895	TRUB1	72	67.063	Otolemur_garnettii
ENSHBUG00000016787	trub1	91	66.023	ENSOARG00000015591	TRUB1	78	63.504	Ovis_aries
ENSHBUG00000016787	trub1	91	67.063	ENSPPAG00000043645	TRUB1	72	67.063	Pan_paniscus
ENSHBUG00000016787	trub1	95	64.528	ENSPPRG00000007096	TRUB1	77	64.419	Panthera_pardus
ENSHBUG00000016787	trub1	95	64.528	ENSPTIG00000006378	TRUB1	77	64.419	Panthera_tigris_altaica
ENSHBUG00000016787	trub1	91	67.063	ENSPTRG00000002964	TRUB1	72	67.063	Pan_troglodytes
ENSHBUG00000016787	trub1	91	67.063	ENSPANG00000020712	TRUB1	72	67.063	Papio_anubis
ENSHBUG00000016787	trub1	60	79.762	ENSPKIG00000003852	trub1	72	79.762	Paramormyrops_kingsleyae
ENSHBUG00000016787	trub1	90	70.400	ENSPSIG00000012877	TRUB1	86	70.400	Pelodiscus_sinensis
ENSHBUG00000016787	trub1	95	78.113	ENSPMGG00000000075	trub1	93	78.113	Periophthalmus_magnuspinnatus
ENSHBUG00000016787	trub1	91	67.063	ENSPEMG00000011156	Trub1	74	67.063	Peromyscus_maniculatus_bairdii
ENSHBUG00000016787	trub1	88	68.852	ENSPCIG00000009729	TRUB1	68	67.470	Phascolarctos_cinereus
ENSHBUG00000016787	trub1	93	83.398	ENSPFOG00000009950	trub1	95	83.398	Poecilia_formosa
ENSHBUG00000016787	trub1	98	80.882	ENSPLAG00000013855	trub1	95	80.882	Poecilia_latipinna
ENSHBUG00000016787	trub1	100	80.216	ENSPMEG00000009064	trub1	100	80.216	Poecilia_mexicana
ENSHBUG00000016787	trub1	98	80.882	ENSPREG00000003343	trub1	98	80.882	Poecilia_reticulata
ENSHBUG00000016787	trub1	91	66.667	ENSPPYG00000002676	TRUB1	72	66.667	Pongo_abelii
ENSHBUG00000016787	trub1	91	61.111	ENSPCAG00000008427	TRUB1	72	61.111	Procavia_capensis
ENSHBUG00000016787	trub1	91	61.508	ENSPCOG00000024360	TRUB1	71	60.714	Propithecus_coquereli
ENSHBUG00000016787	trub1	73	68.317	ENSPVAG00000007575	TRUB1	77	68.317	Pteropus_vampyrus
ENSHBUG00000016787	trub1	100	98.921	ENSPNYG00000018614	trub1	100	98.921	Pundamilia_nyererei
ENSHBUG00000016787	trub1	94	63.985	ENSPNAG00000006881	trub1	85	63.218	Pygocentrus_nattereri
ENSHBUG00000016787	trub1	91	64.683	ENSRNOG00000017321	Trub1	74	64.683	Rattus_norvegicus
ENSHBUG00000016787	trub1	91	58.661	ENSRBIG00000033423	TRUB1	70	58.661	Rhinopithecus_bieti
ENSHBUG00000016787	trub1	91	67.063	ENSRROG00000033902	TRUB1	72	67.063	Rhinopithecus_roxellana
ENSHBUG00000016787	trub1	91	67.063	ENSSBOG00000024237	TRUB1	72	67.063	Saimiri_boliviensis_boliviensis
ENSHBUG00000016787	trub1	77	69.767	ENSSHAG00000009346	TRUB1	72	69.767	Sarcophilus_harrisii
ENSHBUG00000016787	trub1	93	77.606	ENSSFOG00015022124	trub1	88	77.606	Scleropages_formosus
ENSHBUG00000016787	trub1	97	85.766	ENSSMAG00000001020	trub1	98	85.766	Scophthalmus_maximus
ENSHBUG00000016787	trub1	97	84.758	ENSSDUG00000016414	trub1	97	84.758	Seriola_dumerili
ENSHBUG00000016787	trub1	98	84.249	ENSSLDG00000015486	trub1	98	84.249	Seriola_lalandi_dorsalis
ENSHBUG00000016787	trub1	100	65.357	ENSSPUG00000001642	TRUB1	96	65.357	Sphenodon_punctatus
ENSHBUG00000016787	trub1	100	85.252	ENSSPAG00000001217	trub1	98	86.447	Stegastes_partitus
ENSHBUG00000016787	trub1	95	64.528	ENSSSCG00000010653	TRUB1	78	64.179	Sus_scrofa
ENSHBUG00000016787	trub1	94	65.299	ENSTGUG00000010971	TRUB1	98	64.000	Taeniopygia_guttata
ENSHBUG00000016787	trub1	78	56.881	ENSTBEG00000002880	TRUB1	86	56.881	Tupaia_belangeri
ENSHBUG00000016787	trub1	73	67.822	ENSTTRG00000005767	TRUB1	77	67.822	Tursiops_truncatus
ENSHBUG00000016787	trub1	91	67.460	ENSUAMG00000024876	TRUB1	72	67.460	Ursus_americanus
ENSHBUG00000016787	trub1	91	67.460	ENSUMAG00000002411	TRUB1	80	64.815	Ursus_maritimus
ENSHBUG00000016787	trub1	91	67.460	ENSVPAG00000005507	TRUB1	72	67.460	Vicugna_pacos
ENSHBUG00000016787	trub1	91	67.460	ENSVVUG00000010085	TRUB1	61	67.460	Vulpes_vulpes
ENSHBUG00000016787	trub1	88	67.755	ENSXETG00000023828	trub1	88	67.755	Xenopus_tropicalis
ENSHBUG00000016787	trub1	87	85.950	ENSXCOG00000017847	trub1	86	85.950	Xiphophorus_couchianus
ENSHBUG00000016787	trub1	100	79.856	ENSXMAG00000014701	trub1	100	79.856	Xiphophorus_maculatus