EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000017393 (Gene tree)
Gene ID: 102292814
Gene Symbol: upf3b
Alias: zgc:174674|zgc:66390
Full Name: UPF3B%2C regulator of nonsense mediated mRNA decay
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 4316 bases
Position: chrJH425325.1:1311236-1315551
Accession: 102292814
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000015498	Smg4_UPF3	PF03467.15	9.6e-54	1	1
ENSHBUP00000015490	Smg4_UPF3	PF03467.15	1.1e-53	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000023776	-	2989	XM_005913144	ENSHBUP00000015498	459 (aa)	XP_005913206	UPI0003BD9463
ENSHBUT00000023761	-	2904	-	ENSHBUP00000015490	485 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000017393's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000017393's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000017393	upf3b	63	65.798	ENSG00000125351	UPF3B	96	66.507	Homo_sapiens
ENSHBUG00000017393	upf3b	100	84.967	ENSAPOG00000012775	upf3b	100	84.532	Acanthochromis_polyacanthus
ENSHBUG00000017393	upf3b	92	50.346	ENSAMEG00000004259	UPF3A	50	52.766	Ailuropoda_melanoleuca
ENSHBUG00000017393	upf3b	97	58.134	ENSAMEG00000000163	UPF3B	96	56.739	Ailuropoda_melanoleuca
ENSHBUG00000017393	upf3b	100	82.937	ENSACIG00000013582	upf3b	100	84.017	Amphilophus_citrinellus
ENSHBUG00000017393	upf3b	100	83.442	ENSAOCG00000000706	upf3b	100	83.007	Amphiprion_ocellaris
ENSHBUG00000017393	upf3b	100	84.532	ENSAPEG00000005545	upf3b	100	84.096	Amphiprion_percula
ENSHBUG00000017393	upf3b	100	82.796	ENSATEG00000018742	upf3b	100	83.226	Anabas_testudineus
ENSHBUG00000017393	upf3b	89	51.202	ENSACAG00000001540	UPF3A	96	42.553	Anolis_carolinensis
ENSHBUG00000017393	upf3b	99	58.650	ENSACAG00000003625	UPF3B	100	56.871	Anolis_carolinensis
ENSHBUG00000017393	upf3b	97	58.099	ENSANAG00000021894	-	97	66.507	Aotus_nancymaae
ENSHBUG00000017393	upf3b	97	54.644	ENSANAG00000025598	-	98	50.533	Aotus_nancymaae
ENSHBUG00000017393	upf3b	100	99.564	ENSACLG00000001649	upf3b	100	99.564	Astatotilapia_calliptera
ENSHBUG00000017393	upf3b	67	82.239	ENSAMXG00000000199	upf3b	98	82.239	Astyanax_mexicanus
ENSHBUG00000017393	upf3b	96	43.237	ENSAMXG00000002608	upf3a	83	44.581	Astyanax_mexicanus
ENSHBUG00000017393	upf3b	56	68.015	ENSBTAG00000035615	UPF3B	88	67.279	Bos_taurus
ENSHBUG00000017393	upf3b	97	57.484	ENSCJAG00000004975	UPF3B	97	66.029	Callithrix_jacchus
ENSHBUG00000017393	upf3b	97	55.531	ENSCAFG00000018426	UPF3B	98	56.957	Canis_familiaris
ENSHBUG00000017393	upf3b	97	53.362	ENSCAFG00020004074	UPF3B	96	54.783	Canis_lupus_dingo
ENSHBUG00000017393	upf3b	97	56.303	ENSCHIG00000018011	-	88	66.912	Capra_hircus
ENSHBUG00000017393	upf3b	92	40.995	ENSCHIG00000011454	-	50	48.069	Capra_hircus
ENSHBUG00000017393	upf3b	97	56.513	ENSCHIG00000000247	-	96	55.391	Capra_hircus
ENSHBUG00000017393	upf3b	97	55.076	ENSTSYG00000014690	UPF3B	96	61.395	Carlito_syrichta
ENSHBUG00000017393	upf3b	56	50.391	ENSCCAG00000021964	-	82	50.391	Cebus_capucinus
ENSHBUG00000017393	upf3b	93	39.503	ENSCCAG00000029813	-	69	53.695	Cebus_capucinus
ENSHBUG00000017393	upf3b	63	65.798	ENSCATG00000017506	UPF3B	97	66.507	Cercocebus_atys
ENSHBUG00000017393	upf3b	63	66.450	ENSCLAG00000003260	UPF3B	96	58.785	Chinchilla_lanigera
ENSHBUG00000017393	upf3b	63	63.125	ENSCSAG00000018348	UPF3B	96	55.696	Chlorocebus_sabaeus
ENSHBUG00000017393	upf3b	94	59.685	ENSCPBG00000020685	UPF3B	94	59.234	Chrysemys_picta_bellii
ENSHBUG00000017393	upf3b	56	67.647	ENSCANG00000029220	UPF3B	85	67.279	Colobus_angolensis_palliatus
ENSHBUG00000017393	upf3b	68	56.325	ENSCGRG00001013643	-	90	54.030	Cricetulus_griseus_chok1gshd
ENSHBUG00000017393	upf3b	94	54.185	ENSCGRG00001006858	-	94	55.385	Cricetulus_griseus_chok1gshd
ENSHBUG00000017393	upf3b	86	57.357	ENSCGRG00000007627	Upf3b	93	58.706	Cricetulus_griseus_crigri
ENSHBUG00000017393	upf3b	99	74.530	ENSCSEG00000002046	upf3b	99	75.210	Cynoglossus_semilaevis
ENSHBUG00000017393	upf3b	100	80.217	ENSCVAG00000005030	upf3b	100	79.783	Cyprinodon_variegatus
ENSHBUG00000017393	upf3b	94	73.624	ENSDARG00000000489	upf3b	99	69.677	Danio_rerio
ENSHBUG00000017393	upf3b	97	56.329	ENSDNOG00000008665	UPF3B	96	56.118	Dasypus_novemcinctus
ENSHBUG00000017393	upf3b	77	51.532	ENSDNOG00000034391	UPF3A	51	53.648	Dasypus_novemcinctus
ENSHBUG00000017393	upf3b	97	57.267	ENSDORG00000006077	Upf3b	94	57.333	Dipodomys_ordii
ENSHBUG00000017393	upf3b	97	56.833	ENSEASG00005012919	UPF3B	96	56.399	Equus_asinus_asinus
ENSHBUG00000017393	upf3b	97	56.833	ENSECAG00000016947	UPF3B	96	56.399	Equus_caballus
ENSHBUG00000017393	upf3b	99	68.182	ENSELUG00000020389	upf3b	100	70.722	Esox_lucius
ENSHBUG00000017393	upf3b	97	55.388	ENSFCAG00000004388	UPF3B	94	58.000	Felis_catus
ENSHBUG00000017393	upf3b	97	56.795	ENSFALG00000001569	UPF3B	94	55.765	Ficedula_albicollis
ENSHBUG00000017393	upf3b	97	57.918	ENSFDAG00000018869	UPF3B	96	57.484	Fukomys_damarensis
ENSHBUG00000017393	upf3b	100	80.519	ENSFHEG00000017895	upf3b	100	80.519	Fundulus_heteroclitus
ENSHBUG00000017393	upf3b	100	67.653	ENSGMOG00000001621	upf3b	100	67.516	Gadus_morhua
ENSHBUG00000017393	upf3b	99	56.818	ENSGALG00000008618	UPF3B	100	56.818	Gallus_gallus
ENSHBUG00000017393	upf3b	100	78.043	ENSGAFG00000000829	upf3b	100	78.696	Gambusia_affinis
ENSHBUG00000017393	upf3b	100	77.634	ENSGACG00000017435	upf3b	94	89.062	Gasterosteus_aculeatus
ENSHBUG00000017393	upf3b	94	64.045	ENSGAGG00000001219	UPF3B	94	62.838	Gopherus_agassizii
ENSHBUG00000017393	upf3b	63	65.798	ENSGGOG00000023995	UPF3B	96	57.267	Gorilla_gorilla
ENSHBUG00000017393	upf3b	97	57.701	ENSHGLG00000019582	-	96	57.050	Heterocephalus_glaber_female
ENSHBUG00000017393	upf3b	72	54.885	ENSHGLG00000011189	-	54	67.532	Heterocephalus_glaber_female
ENSHBUG00000017393	upf3b	69	57.485	ENSHGLG00100001889	-	55	67.532	Heterocephalus_glaber_male
ENSHBUG00000017393	upf3b	97	54.881	ENSHGLG00100002042	-	96	54.013	Heterocephalus_glaber_male
ENSHBUG00000017393	upf3b	100	72.708	ENSHCOG00000017004	upf3b	100	72.979	Hippocampus_comes
ENSHBUG00000017393	upf3b	99	70.474	ENSIPUG00000019249	upf3b	99	70.690	Ictalurus_punctatus
ENSHBUG00000017393	upf3b	95	43.441	ENSIPUG00000023450	upf3a	83	44.471	Ictalurus_punctatus
ENSHBUG00000017393	upf3b	97	58.568	ENSSTOG00000001101	UPF3B	96	56.739	Ictidomys_tridecemlineatus
ENSHBUG00000017393	upf3b	68	61.145	ENSJJAG00000000053	Upf3b	94	56.637	Jaculus_jaculus
ENSHBUG00000017393	upf3b	100	83.007	ENSKMAG00000020300	upf3b	100	83.442	Kryptolebias_marmoratus
ENSHBUG00000017393	upf3b	60	87.004	ENSLBEG00000028689	upf3b	59	87.313	Labrus_bergylta
ENSHBUG00000017393	upf3b	97	62.801	ENSLACG00000008691	UPF3B	98	61.171	Latimeria_chalumnae
ENSHBUG00000017393	upf3b	68	73.567	ENSLOCG00000015238	upf3b	99	66.594	Lepisosteus_oculatus
ENSHBUG00000017393	upf3b	92	53.721	ENSLOCG00000002665	upf3a	90	44.342	Lepisosteus_oculatus
ENSHBUG00000017393	upf3b	97	55.508	ENSLAFG00000001267	UPF3B	96	56.223	Loxodonta_africana
ENSHBUG00000017393	upf3b	63	65.472	ENSMFAG00000045414	UPF3B	97	66.507	Macaca_fascicularis
ENSHBUG00000017393	upf3b	63	65.472	ENSMMUG00000020222	UPF3B	97	66.507	Macaca_mulatta
ENSHBUG00000017393	upf3b	87	46.040	ENSMMUG00000007449	UPF3A	50	54.585	Macaca_mulatta
ENSHBUG00000017393	upf3b	63	65.472	ENSMNEG00000039794	UPF3B	97	66.507	Macaca_nemestrina
ENSHBUG00000017393	upf3b	87	46.782	ENSMLEG00000014726	UPF3A	53	54.348	Mandrillus_leucophaeus
ENSHBUG00000017393	upf3b	63	65.798	ENSMLEG00000010999	UPF3B	97	66.507	Mandrillus_leucophaeus
ENSHBUG00000017393	upf3b	100	99.346	ENSMZEG00005007871	upf3b	100	99.346	Maylandia_zebra
ENSHBUG00000017393	upf3b	84	58.015	ENSMGAG00000007728	UPF3B	99	58.015	Meleagris_gallopavo
ENSHBUG00000017393	upf3b	85	50.495	ENSMGAG00000014837	UPF3A	51	53.302	Meleagris_gallopavo
ENSHBUG00000017393	upf3b	94	53.437	ENSMAUG00000008705	Upf3b	94	55.088	Mesocricetus_auratus
ENSHBUG00000017393	upf3b	56	67.883	ENSMICG00000001743	UPF3B	85	67.279	Microcebus_murinus
ENSHBUG00000017393	upf3b	94	54.526	ENSMOCG00000017893	Upf3b	94	55.269	Microtus_ochrogaster
ENSHBUG00000017393	upf3b	100	78.959	ENSMMOG00000004183	upf3b	100	78.959	Mola_mola
ENSHBUG00000017393	upf3b	92	50.575	ENSMODG00000003159	UPF3A	53	55.603	Monodelphis_domestica
ENSHBUG00000017393	upf3b	87	62.189	ENSMODG00000010232	UPF3B	93	60.553	Monodelphis_domestica
ENSHBUG00000017393	upf3b	100	82.581	ENSMALG00000008042	upf3b	100	82.366	Monopterus_albus
ENSHBUG00000017393	upf3b	94	53.201	MGP_CAROLIEiJ_G0032999	Upf3b	94	55.973	Mus_caroli
ENSHBUG00000017393	upf3b	94	53.422	ENSMUSG00000036572	Upf3b	94	56.195	Mus_musculus
ENSHBUG00000017393	upf3b	94	54.305	MGP_PahariEiJ_G0031543	Upf3b	94	56.416	Mus_pahari
ENSHBUG00000017393	upf3b	94	53.422	MGP_SPRETEiJ_G0034152	Upf3b	94	56.195	Mus_spretus
ENSHBUG00000017393	upf3b	97	55.508	ENSMPUG00000001531	UPF3B	98	56.739	Mustela_putorius_furo
ENSHBUG00000017393	upf3b	87	46.683	ENSMLUG00000015905	UPF3A	54	53.617	Myotis_lucifugus
ENSHBUG00000017393	upf3b	97	58.099	ENSMLUG00000010821	UPF3B	94	58.315	Myotis_lucifugus
ENSHBUG00000017393	upf3b	94	54.324	ENSNGAG00000008231	Upf3b	94	55.088	Nannospalax_galili
ENSHBUG00000017393	upf3b	92	55.765	ENSNLEG00000014897	UPF3B	86	59.709	Nomascus_leucogenys
ENSHBUG00000017393	upf3b	97	56.277	ENSODEG00000002186	-	96	55.435	Octodon_degus
ENSHBUG00000017393	upf3b	100	95.259	ENSONIG00000002536	upf3b	100	95.259	Oreochromis_niloticus
ENSHBUG00000017393	upf3b	82	44.588	ENSOANG00000006985	-	55	44.348	Ornithorhynchus_anatinus
ENSHBUG00000017393	upf3b	97	55.858	ENSOCUG00000010213	UPF3B	96	54.968	Oryctolagus_cuniculus
ENSHBUG00000017393	upf3b	100	77.996	ENSORLG00000001026	upf3b	100	78.214	Oryzias_latipes
ENSHBUG00000017393	upf3b	100	77.560	ENSORLG00020003758	upf3b	100	77.778	Oryzias_latipes_hni
ENSHBUG00000017393	upf3b	92	49.213	ENSORLG00020014317	upf3a	91	46.993	Oryzias_latipes_hni
ENSHBUG00000017393	upf3b	100	77.560	ENSORLG00015012954	upf3b	100	77.778	Oryzias_latipes_hsok
ENSHBUG00000017393	upf3b	97	46.970	ENSOMEG00000014425	upf3a	84	42.584	Oryzias_melastigma
ENSHBUG00000017393	upf3b	100	78.431	ENSOMEG00000014736	upf3b	100	78.649	Oryzias_melastigma
ENSHBUG00000017393	upf3b	63	65.798	ENSOGAG00000004643	-	96	56.957	Otolemur_garnettii
ENSHBUG00000017393	upf3b	97	56.061	ENSOGAG00000033003	-	98	54.545	Otolemur_garnettii
ENSHBUG00000017393	upf3b	90	45.411	ENSOARG00000007869	-	55	51.282	Ovis_aries
ENSHBUG00000017393	upf3b	97	56.159	ENSOARG00000016051	-	96	55.042	Ovis_aries
ENSHBUG00000017393	upf3b	63	65.798	ENSPPAG00000040390	UPF3B	96	57.267	Pan_paniscus
ENSHBUG00000017393	upf3b	97	58.531	ENSPPRG00000023536	UPF3B	94	57.778	Panthera_pardus
ENSHBUG00000017393	upf3b	97	53.236	ENSPTIG00000015264	UPF3B	85	66.912	Panthera_tigris_altaica
ENSHBUG00000017393	upf3b	63	65.798	ENSPTRG00000022228	UPF3B	96	57.267	Pan_troglodytes
ENSHBUG00000017393	upf3b	63	65.798	ENSPANG00000000900	UPF3B	97	66.507	Papio_anubis
ENSHBUG00000017393	upf3b	99	66.017	ENSPKIG00000019226	upf3b	92	83.803	Paramormyrops_kingsleyae
ENSHBUG00000017393	upf3b	90	48.018	ENSPKIG00000004422	upf3a	50	57.205	Paramormyrops_kingsleyae
ENSHBUG00000017393	upf3b	92	51.044	ENSPSIG00000007468	UPF3A	55	55.459	Pelodiscus_sinensis
ENSHBUG00000017393	upf3b	57	65.283	ENSPSIG00000005833	UPF3B	86	66.393	Pelodiscus_sinensis
ENSHBUG00000017393	upf3b	56	88.281	ENSPMGG00000016067	upf3b	95	86.973	Periophthalmus_magnuspinnatus
ENSHBUG00000017393	upf3b	94	54.185	ENSPEMG00000012352	Upf3b	94	56.071	Peromyscus_maniculatus_bairdii
ENSHBUG00000017393	upf3b	75	55.349	ENSPCIG00000019590	-	64	67.808	Phascolarctos_cinereus
ENSHBUG00000017393	upf3b	89	59.466	ENSPCIG00000028914	UPF3B	83	57.538	Phascolarctos_cinereus
ENSHBUG00000017393	upf3b	93	49.206	ENSPLAG00000011960	upf3a	62	71.963	Poecilia_latipinna
ENSHBUG00000017393	upf3b	100	78.913	ENSPLAG00000019922	upf3b	100	79.565	Poecilia_latipinna
ENSHBUG00000017393	upf3b	100	78.913	ENSPLAG00000005105	upf3b	100	79.565	Poecilia_latipinna
ENSHBUG00000017393	upf3b	58	71.053	ENSPMEG00000000836	upf3a	83	42.326	Poecilia_mexicana
ENSHBUG00000017393	upf3b	100	78.913	ENSPMEG00000023532	upf3b	100	79.565	Poecilia_mexicana
ENSHBUG00000017393	upf3b	56	67.399	ENSPPYG00000020675	-	82	67.033	Pongo_abelii
ENSHBUG00000017393	upf3b	97	53.165	ENSPCAG00000009464	UPF3B	96	54.968	Procavia_capensis
ENSHBUG00000017393	upf3b	97	58.315	ENSPCOG00000021960	UPF3B	85	66.912	Propithecus_coquereli
ENSHBUG00000017393	upf3b	97	47.689	ENSPVAG00000014075	UPF3B	61	55.932	Pteropus_vampyrus
ENSHBUG00000017393	upf3b	100	98.911	ENSPNYG00000009846	upf3b	100	98.911	Pundamilia_nyererei
ENSHBUG00000017393	upf3b	96	43.011	ENSPNAG00000019532	upf3a	87	43.765	Pygocentrus_nattereri
ENSHBUG00000017393	upf3b	99	74.138	ENSPNAG00000021528	upf3b	99	86.047	Pygocentrus_nattereri
ENSHBUG00000017393	upf3b	94	54.084	ENSRNOG00000039994	Upf3b	94	56.195	Rattus_norvegicus
ENSHBUG00000017393	upf3b	88	45.742	ENSRBIG00000034007	UPF3A	52	54.585	Rhinopithecus_bieti
ENSHBUG00000017393	upf3b	63	65.798	ENSRROG00000041031	UPF3B	97	66.507	Rhinopithecus_roxellana
ENSHBUG00000017393	upf3b	97	55.292	ENSSBOG00000019740	UPF3B	99	66.029	Saimiri_boliviensis_boliviensis
ENSHBUG00000017393	upf3b	93	50.229	ENSSHAG00000009895	UPF3A	54	54.936	Sarcophilus_harrisii
ENSHBUG00000017393	upf3b	98	56.757	ENSSHAG00000008634	UPF3B	99	55.115	Sarcophilus_harrisii
ENSHBUG00000017393	upf3b	99	70.065	ENSSFOG00015005614	upf3b	99	69.499	Scleropages_formosus
ENSHBUG00000017393	upf3b	100	80.472	ENSSMAG00000012913	upf3b	100	90.234	Scophthalmus_maximus
ENSHBUG00000017393	upf3b	92	42.993	ENSSDUG00000009680	upf3a	55	75.281	Seriola_dumerili
ENSHBUG00000017393	upf3b	100	85.900	ENSSDUG00000005682	upf3b	100	86.768	Seriola_dumerili
ENSHBUG00000017393	upf3b	100	86.985	ENSSLDG00000003130	upf3b	100	86.551	Seriola_lalandi_dorsalis
ENSHBUG00000017393	upf3b	86	55.637	ENSSARG00000004147	UPF3B	93	58.981	Sorex_araneus
ENSHBUG00000017393	upf3b	99	56.646	ENSSPUG00000013082	UPF3B	100	55.533	Sphenodon_punctatus
ENSHBUG00000017393	upf3b	100	85.621	ENSSPAG00000009989	upf3b	100	86.057	Stegastes_partitus
ENSHBUG00000017393	upf3b	88	45.388	ENSSSCG00000024679	UPF3A	55	53.648	Sus_scrofa
ENSHBUG00000017393	upf3b	97	55.011	ENSSSCG00000012617	UPF3B	96	55.870	Sus_scrofa
ENSHBUG00000017393	upf3b	87	53.883	ENSTGUG00000009493	UPF3A	98	46.250	Taeniopygia_guttata
ENSHBUG00000017393	upf3b	90	62.110	ENSTGUG00000003413	UPF3B	96	60.911	Taeniopygia_guttata
ENSHBUG00000017393	upf3b	90	50.236	ENSTRUG00000012730	upf3a	83	49.052	Takifugu_rubripes
ENSHBUG00000017393	upf3b	100	78.525	ENSTRUG00000010645	upf3b	100	77.874	Takifugu_rubripes
ENSHBUG00000017393	upf3b	100	67.888	ENSTNIG00000015763	upf3b	100	64.009	Tetraodon_nigroviridis
ENSHBUG00000017393	upf3b	94	48.596	ENSTBEG00000003229	UPF3B	74	57.509	Tupaia_belangeri
ENSHBUG00000017393	upf3b	74	41.329	ENSTBEG00000017186	-	59	43.523	Tupaia_belangeri
ENSHBUG00000017393	upf3b	97	56.182	ENSUAMG00000024565	UPF3B	96	54.565	Ursus_americanus
ENSHBUG00000017393	upf3b	89	55.097	ENSUMAG00000002150	UPF3B	87	54.258	Ursus_maritimus
ENSHBUG00000017393	upf3b	87	43.932	ENSVPAG00000003525	UPF3A	56	54.585	Vicugna_pacos
ENSHBUG00000017393	upf3b	84	57.750	ENSVPAG00000009971	UPF3B	95	56.391	Vicugna_pacos
ENSHBUG00000017393	upf3b	97	53.145	ENSVVUG00000011594	UPF3B	97	66.507	Vulpes_vulpes
ENSHBUG00000017393	upf3b	87	46.489	ENSXETG00000002572	upf3a	89	44.527	Xenopus_tropicalis
ENSHBUG00000017393	upf3b	94	55.204	ENSXETG00000007440	upf3b	84	74.742	Xenopus_tropicalis
ENSHBUG00000017393	upf3b	100	71.522	ENSXCOG00000016586	upf3b	97	89.744	Xiphophorus_couchianus
ENSHBUG00000017393	upf3b	100	78.043	ENSXMAG00000013680	upf3b	100	78.696	Xiphophorus_maculatus