EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000017906 (Gene tree)
Gene ID: 102295128
Gene Symbol: parn
Alias: zgc:56067
Full Name: poly(A)-specific ribonuclease
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 10290 bases
Position: chrJH425840.1:106826-117115
Accession: 102295128
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000015870	RNA_bind	PF08675.11	1e-33	1	1
ENSHBUP00000015901	RNA_bind	PF08675.11	1.2e-33	1	1
ENSHBUP00000015870	CAF1	PF04857.20	6e-91	1	1
ENSHBUP00000015901	CAF1	PF04857.20	3.8e-90	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000024285	-	2653	XM_005946983	ENSHBUP00000015901	679 (aa)	XP_005947045	UPI0003BCC067
ENSHBUT00000024248	-	1791	-	ENSHBUP00000015870	596 (aa)	-	-

Gene Model

Click here to download ENSHBUG00000017906's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000017906's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000017906	parn	90	77.654	ENSG00000140694	PARN	99	70.383	Homo_sapiens
ENSHBUG00000017906	parn	90	76.766	ENSAMEG00000011208	PARN	83	78.879	Ailuropoda_melanoleuca
ENSHBUG00000017906	parn	93	90.698	ENSACIG00000000619	parn	99	85.446	Amphilophus_citrinellus
ENSHBUG00000017906	parn	100	89.213	ENSAOCG00000003465	parn	100	89.359	Amphiprion_ocellaris
ENSHBUG00000017906	parn	90	86.567	ENSAPEG00000010661	parn	94	94.479	Amphiprion_percula
ENSHBUG00000017906	parn	100	89.927	ENSATEG00000004661	parn	100	90.219	Anabas_testudineus
ENSHBUG00000017906	parn	93	73.882	ENSAPLG00000013914	PARN	91	74.483	Anas_platyrhynchos
ENSHBUG00000017906	parn	90	77.509	ENSACAG00000004973	PARN	90	73.898	Anolis_carolinensis
ENSHBUG00000017906	parn	90	77.095	ENSANAG00000031516	PARN	94	77.966	Aotus_nancymaae
ENSHBUG00000017906	parn	100	99.558	ENSACLG00000004742	parn	100	99.558	Astatotilapia_calliptera
ENSHBUG00000017906	parn	91	81.101	ENSAMXG00000012390	parn	96	76.382	Astyanax_mexicanus
ENSHBUG00000017906	parn	90	73.743	ENSBTAG00000018097	PARN	90	73.805	Bos_taurus
ENSHBUG00000017906	parn	90	77.654	ENSCJAG00000015866	PARN	94	77.966	Callithrix_jacchus
ENSHBUG00000017906	parn	90	76.536	ENSCAFG00000018795	PARN	90	74.266	Canis_familiaris
ENSHBUG00000017906	parn	90	76.909	ENSCAFG00020024126	PARN	90	74.611	Canis_lupus_dingo
ENSHBUG00000017906	parn	92	75.226	ENSCHIG00000018143	PARN	91	74.227	Capra_hircus
ENSHBUG00000017906	parn	79	49.587	ENSCAPG00000007984	PARN	78	51.351	Cavia_aperea
ENSHBUG00000017906	parn	90	76.164	ENSCPOG00000002263	PARN	91	73.801	Cavia_porcellus
ENSHBUG00000017906	parn	90	77.654	ENSCCAG00000030367	PARN	94	77.966	Cebus_capucinus
ENSHBUG00000017906	parn	57	33.333	ENSCATG00000033196	PNLDC1	72	33.333	Cercocebus_atys
ENSHBUG00000017906	parn	100	68.386	ENSCATG00000041368	PARN	100	77.966	Cercocebus_atys
ENSHBUG00000017906	parn	90	76.723	ENSCLAG00000015406	PARN	99	67.030	Chinchilla_lanigera
ENSHBUG00000017906	parn	90	77.654	ENSCSAG00000008142	PARN	92	74.199	Chlorocebus_sabaeus
ENSHBUG00000017906	parn	89	59.057	ENSCHOG00000007014	PARN	91	58.031	Choloepus_hoffmanni
ENSHBUG00000017906	parn	84	74.603	ENSCPBG00000006609	PARN	90	75.191	Chrysemys_picta_bellii
ENSHBUG00000017906	parn	86	42.056	ENSCING00000010142	-	99	42.322	Ciona_intestinalis
ENSHBUG00000017906	parn	94	63.495	ENSCANG00000028849	-	89	77.966	Colobus_angolensis_palliatus
ENSHBUG00000017906	parn	90	75.791	ENSCGRG00001012096	Parn	100	66.876	Cricetulus_griseus_chok1gshd
ENSHBUG00000017906	parn	90	75.791	ENSCGRG00000004939	Parn	100	66.876	Cricetulus_griseus_crigri
ENSHBUG00000017906	parn	100	82.849	ENSCSEG00000002064	parn	100	82.849	Cynoglossus_semilaevis
ENSHBUG00000017906	parn	100	85.673	ENSCVAG00000014848	parn	100	85.380	Cyprinodon_variegatus
ENSHBUG00000017906	parn	100	67.199	ENSDARG00000102634	parn	100	67.054	Danio_rerio
ENSHBUG00000017906	parn	90	77.095	ENSDNOG00000000833	PARN	94	79.213	Dasypus_novemcinctus
ENSHBUG00000017906	parn	71	71.161	ENSETEG00000014828	-	69	75.758	Echinops_telfairi
ENSHBUG00000017906	parn	90	76.164	ENSEASG00005011400	PARN	92	72.148	Equus_asinus_asinus
ENSHBUG00000017906	parn	90	75.978	ENSECAG00000017792	PARN	92	71.980	Equus_caballus
ENSHBUG00000017906	parn	77	61.905	ENSEEUG00000010370	PARN	78	63.964	Erinaceus_europaeus
ENSHBUG00000017906	parn	100	75.507	ENSELUG00000013139	parn	90	75.797	Esox_lucius
ENSHBUG00000017906	parn	90	77.281	ENSFCAG00000044961	PARN	83	79.401	Felis_catus
ENSHBUG00000017906	parn	93	74.014	ENSFALG00000003911	PARN	90	74.271	Ficedula_albicollis
ENSHBUG00000017906	parn	92	75.045	ENSFDAG00000009234	PARN	90	74.739	Fukomys_damarensis
ENSHBUG00000017906	parn	93	81.802	ENSFHEG00000013738	parn	92	91.525	Fundulus_heteroclitus
ENSHBUG00000017906	parn	92	83.363	ENSGMOG00000003231	parn	99	85.273	Gadus_morhua
ENSHBUG00000017906	parn	100	67.863	ENSGALG00000003091	PARN	100	68.019	Gallus_gallus
ENSHBUG00000017906	parn	100	84.716	ENSGAFG00000011061	parn	100	83.988	Gambusia_affinis
ENSHBUG00000017906	parn	100	79.266	ENSGACG00000019501	parn	100	79.585	Gasterosteus_aculeatus
ENSHBUG00000017906	parn	90	77.654	ENSGGOG00000025224	PARN	94	75.000	Gorilla_gorilla
ENSHBUG00000017906	parn	90	76.164	ENSHGLG00000010886	PARN	91	73.459	Heterocephalus_glaber_female
ENSHBUG00000017906	parn	90	76.164	ENSHGLG00100014659	PARN	91	73.459	Heterocephalus_glaber_male
ENSHBUG00000017906	parn	99	77.909	ENSHCOG00000008683	parn	94	84.249	Hippocampus_comes
ENSHBUG00000017906	parn	91	71.296	ENSIPUG00000012401	parn	100	61.662	Ictalurus_punctatus
ENSHBUG00000017906	parn	92	74.094	ENSSTOG00000007519	PARN	91	73.702	Ictidomys_tridecemlineatus
ENSHBUG00000017906	parn	100	67.563	ENSJJAG00000023049	Parn	100	67.563	Jaculus_jaculus
ENSHBUG00000017906	parn	100	87.135	ENSKMAG00000009462	parn	100	87.135	Kryptolebias_marmoratus
ENSHBUG00000017906	parn	93	90.450	ENSLBEG00000009167	parn	100	88.715	Labrus_bergylta
ENSHBUG00000017906	parn	85	74.162	ENSLACG00000004207	PARN	100	75.708	Latimeria_chalumnae
ENSHBUG00000017906	parn	93	80.000	ENSLOCG00000000715	parn	100	72.635	Lepisosteus_oculatus
ENSHBUG00000017906	parn	90	77.281	ENSLAFG00000015036	PARN	92	74.530	Loxodonta_africana
ENSHBUG00000017906	parn	90	75.746	ENSMFAG00000044852	PARN	89	77.966	Macaca_fascicularis
ENSHBUG00000017906	parn	90	77.654	ENSMMUG00000018849	PARN	89	77.966	Macaca_mulatta
ENSHBUG00000017906	parn	90	77.654	ENSMNEG00000045108	PARN	89	77.966	Macaca_nemestrina
ENSHBUG00000017906	parn	90	77.467	ENSMLEG00000031743	PARN	89	77.966	Mandrillus_leucophaeus
ENSHBUG00000017906	parn	100	90.102	ENSMAMG00000006939	parn	100	90.102	Mastacembelus_armatus
ENSHBUG00000017906	parn	100	99.705	ENSMZEG00005013590	parn	100	99.705	Maylandia_zebra
ENSHBUG00000017906	parn	92	72.531	ENSMGAG00000001004	PARN	90	72.396	Meleagris_gallopavo
ENSHBUG00000017906	parn	100	63.003	ENSMAUG00000008025	Parn	100	62.384	Mesocricetus_auratus
ENSHBUG00000017906	parn	56	30.822	ENSMAUG00000012298	Pnldc1	68	30.822	Mesocricetus_auratus
ENSHBUG00000017906	parn	92	75.407	ENSMICG00000016053	PARN	91	76.271	Microcebus_murinus
ENSHBUG00000017906	parn	83	76.908	ENSMOCG00000022211	Parn	100	79.192	Microtus_ochrogaster
ENSHBUG00000017906	parn	100	81.729	ENSMMOG00000011333	parn	100	81.729	Mola_mola
ENSHBUG00000017906	parn	83	78.800	ENSMODG00000004915	PARN	99	81.087	Monodelphis_domestica
ENSHBUG00000017906	parn	100	87.542	ENSMALG00000019426	parn	94	94.043	Monopterus_albus
ENSHBUG00000017906	parn	90	74.674	MGP_CAROLIEiJ_G0020466	Parn	91	72.241	Mus_caroli
ENSHBUG00000017906	parn	90	74.115	ENSMUSG00000022685	Parn	100	75.610	Mus_musculus
ENSHBUG00000017906	parn	92	73.070	MGP_PahariEiJ_G0016172	Parn	91	73.010	Mus_pahari
ENSHBUG00000017906	parn	90	74.674	MGP_SPRETEiJ_G0021361	Parn	100	65.620	Mus_spretus
ENSHBUG00000017906	parn	90	77.281	ENSMPUG00000014464	PARN	90	74.740	Mustela_putorius_furo
ENSHBUG00000017906	parn	83	76.104	ENSMLUG00000005414	PARN	100	78.586	Myotis_lucifugus
ENSHBUG00000017906	parn	100	94.295	ENSNBRG00000006805	parn	100	94.295	Neolamprologus_brichardi
ENSHBUG00000017906	parn	90	77.467	ENSNLEG00000010241	PARN	91	77.966	Nomascus_leucogenys
ENSHBUG00000017906	parn	82	65.000	ENSMEUG00000008178	-	77	65.000	Notamacropus_eugenii
ENSHBUG00000017906	parn	89	73.724	ENSOPRG00000012187	PARN	92	69.191	Ochotona_princeps
ENSHBUG00000017906	parn	90	71.614	ENSODEG00000001617	PARN	92	68.284	Octodon_degus
ENSHBUG00000017906	parn	100	98.969	ENSONIG00000000151	parn	100	98.969	Oreochromis_niloticus
ENSHBUG00000017906	parn	50	79.070	ENSOANG00000020155	-	96	66.406	Ornithorhynchus_anatinus
ENSHBUG00000017906	parn	93	74.910	ENSOCUG00000000322	PARN	91	75.087	Oryctolagus_cuniculus
ENSHBUG00000017906	parn	100	82.111	ENSORLG00020010313	parn	100	82.111	Oryzias_latipes_hni
ENSHBUG00000017906	parn	100	81.818	ENSORLG00015000300	parn	100	81.818	Oryzias_latipes_hsok
ENSHBUG00000017906	parn	100	80.730	ENSOMEG00000019555	parn	100	80.584	Oryzias_melastigma
ENSHBUG00000017906	parn	83	76.754	ENSOGAG00000014626	PARN	100	79.032	Otolemur_garnettii
ENSHBUG00000017906	parn	83	77.711	ENSOARG00000007574	PARN	100	80.000	Ovis_aries
ENSHBUG00000017906	parn	90	77.467	ENSPPAG00000031438	PARN	91	77.966	Pan_paniscus
ENSHBUG00000017906	parn	90	77.281	ENSPPRG00000018583	PARN	83	79.401	Panthera_pardus
ENSHBUG00000017906	parn	90	77.281	ENSPTIG00000012135	PARN	83	79.401	Panthera_tigris_altaica
ENSHBUG00000017906	parn	90	77.467	ENSPTRG00000007792	PARN	91	77.966	Pan_troglodytes
ENSHBUG00000017906	parn	90	75.233	ENSPANG00000020099	PARN	89	77.966	Papio_anubis
ENSHBUG00000017906	parn	94	79.181	ENSPKIG00000022807	parn	90	76.256	Paramormyrops_kingsleyae
ENSHBUG00000017906	parn	94	74.690	ENSPSIG00000014804	PARN	91	74.872	Pelodiscus_sinensis
ENSHBUG00000017906	parn	93	82.321	ENSPMGG00000014431	parn	85	80.065	Periophthalmus_magnuspinnatus
ENSHBUG00000017906	parn	90	73.507	ENSPEMG00000018439	Parn	91	71.626	Peromyscus_maniculatus_bairdii
ENSHBUG00000017906	parn	87	66.987	ENSPMAG00000003956	parn	98	69.171	Petromyzon_marinus
ENSHBUG00000017906	parn	71	72.600	ENSPCIG00000001259	PARN	91	77.966	Phascolarctos_cinereus
ENSHBUG00000017906	parn	100	85.255	ENSPFOG00000012823	parn	100	85.255	Poecilia_formosa
ENSHBUG00000017906	parn	100	85.401	ENSPLAG00000006395	parn	100	85.401	Poecilia_latipinna
ENSHBUG00000017906	parn	100	85.401	ENSPMEG00000007711	parn	100	85.401	Poecilia_mexicana
ENSHBUG00000017906	parn	100	85.401	ENSPREG00000000147	parn	100	85.401	Poecilia_reticulata
ENSHBUG00000017906	parn	90	76.994	ENSPPYG00000007123	PARN	91	74.276	Pongo_abelii
ENSHBUG00000017906	parn	84	67.262	ENSPCAG00000001741	PARN	92	64.158	Procavia_capensis
ENSHBUG00000017906	parn	92	72.514	ENSPCOG00000019292	PARN	98	76.271	Propithecus_coquereli
ENSHBUG00000017906	parn	89	73.774	ENSPVAG00000002547	PARN	91	71.304	Pteropus_vampyrus
ENSHBUG00000017906	parn	100	99.558	ENSPNYG00000006835	parn	100	99.558	Pundamilia_nyererei
ENSHBUG00000017906	parn	93	72.144	ENSPNAG00000018905	parn	100	72.144	Pygocentrus_nattereri
ENSHBUG00000017906	parn	92	73.609	ENSRNOG00000002912	Parn	96	79.592	Rattus_norvegicus
ENSHBUG00000017906	parn	90	77.612	ENSSBOG00000034726	PARN	94	77.966	Saimiri_boliviensis_boliviensis
ENSHBUG00000017906	parn	70	76.960	ENSSHAG00000008493	PARN	93	79.665	Sarcophilus_harrisii
ENSHBUG00000017906	parn	93	79.422	ENSSFOG00015014165	parn	98	75.966	Scleropages_formosus
ENSHBUG00000017906	parn	100	84.406	ENSSMAG00000000685	parn	100	84.835	Scophthalmus_maximus
ENSHBUG00000017906	parn	100	90.975	ENSSDUG00000014555	parn	100	90.684	Seriola_dumerili
ENSHBUG00000017906	parn	73	78.539	ENSSARG00000014339	PARN	75	81.149	Sorex_araneus
ENSHBUG00000017906	parn	94	74.336	ENSSPUG00000007719	PARN	91	75.000	Sphenodon_punctatus
ENSHBUG00000017906	parn	100	90.323	ENSSPAG00000007095	parn	100	90.323	Stegastes_partitus
ENSHBUG00000017906	parn	90	76.536	ENSSSCG00000007878	PARN	80	74.394	Sus_scrofa
ENSHBUG00000017906	parn	93	74.061	ENSTGUG00000004971	PARN	91	74.144	Taeniopygia_guttata
ENSHBUG00000017906	parn	100	79.779	ENSTNIG00000008252	parn	99	83.736	Tetraodon_nigroviridis
ENSHBUG00000017906	parn	57	31.000	ENSTBEG00000009131	PNLDC1	68	32.000	Tupaia_belangeri
ENSHBUG00000017906	parn	80	64.854	ENSTBEG00000010407	PARN	90	62.928	Tupaia_belangeri
ENSHBUG00000017906	parn	82	77.347	ENSTTRG00000002843	PARN	91	69.655	Tursiops_truncatus
ENSHBUG00000017906	parn	73	72.603	ENSUAMG00000008283	PARN	90	72.603	Ursus_americanus
ENSHBUG00000017906	parn	90	77.095	ENSUMAG00000004527	PARN	83	79.213	Ursus_maritimus
ENSHBUG00000017906	parn	89	73.585	ENSVPAG00000008968	PARN	93	71.034	Vicugna_pacos
ENSHBUG00000017906	parn	90	76.909	ENSVVUG00000019509	PARN	90	74.611	Vulpes_vulpes
ENSHBUG00000017906	parn	90	73.978	ENSXETG00000010994	parn	100	76.894	Xenopus_tropicalis
ENSHBUG00000017906	parn	93	83.094	ENSXCOG00000015990	parn	99	83.838	Xiphophorus_couchianus
ENSHBUG00000017906	parn	100	83.796	ENSXMAG00000014783	parn	100	83.504	Xiphophorus_maculatus