EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Orthologs

Description

Ensembl ID: ENSHBUG00000018275 (Gene tree)
Gene ID: 102298757
Gene Symbol: ptcd1
Alias: wu:fi36d06
Full Name: pentatricopeptide repeat-containing protein 1%2C mitochondrial-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 6424 bases
Position: chrJH425426.1:1697521-1703944
Accession: 102298757
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000016343	PPR	PF01535.20	8e-18	1	2
ENSHBUP00000016343	PPR	PF01535.20	8e-18	2	2

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000024842	-	3924	XM_005929326	ENSHBUP00000016343	708 (aa)	XP_005929388	UPI0003BCC213

Gene Model

Click here to download ENSHBUG00000018275's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000018275's network

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000018275	ptcd1	80	48.976	ENSG00000248919	ATP5MF-PTCD1	78	49.063	Homo_sapiens
ENSHBUG00000018275	ptcd1	80	48.976	ENSG00000106246	PTCD1	83	49.063	Homo_sapiens
ENSHBUG00000018275	ptcd1	88	68.239	ENSAPOG00000010679	ptcd1	96	68.239	Acanthochromis_polyacanthus
ENSHBUG00000018275	ptcd1	80	50.847	ENSAMEG00000006224	-	77	50.847	Ailuropoda_melanoleuca
ENSHBUG00000018275	ptcd1	92	83.788	ENSACIG00000017861	ptcd1	97	83.788	Amphilophus_citrinellus
ENSHBUG00000018275	ptcd1	88	69.025	ENSAOCG00000022617	ptcd1	94	69.025	Amphiprion_ocellaris
ENSHBUG00000018275	ptcd1	100	67.316	ENSAOCG00000020741	-	99	67.316	Amphiprion_ocellaris
ENSHBUG00000018275	ptcd1	100	67.455	ENSAPEG00000022632	ptcd1	99	67.455	Amphiprion_percula
ENSHBUG00000018275	ptcd1	100	71.189	ENSATEG00000007016	ptcd1	100	71.189	Anabas_testudineus
ENSHBUG00000018275	ptcd1	80	49.915	ENSAPLG00000006862	-	91	49.915	Anas_platyrhynchos
ENSHBUG00000018275	ptcd1	80	50.169	ENSACAG00000012871	-	77	50.169	Anolis_carolinensis
ENSHBUG00000018275	ptcd1	80	48.826	ENSANAG00000035790	-	86	48.911	Aotus_nancymaae
ENSHBUG00000018275	ptcd1	100	98.164	ENSACLG00000002824	ptcd1	100	98.164	Astatotilapia_calliptera
ENSHBUG00000018275	ptcd1	80	51.882	ENSAMXG00000037292	ptcd1	87	50.924	Astyanax_mexicanus
ENSHBUG00000018275	ptcd1	84	47.573	ENSBTAG00000020440	-	75	47.735	Bos_taurus
ENSHBUG00000018275	ptcd1	80	48.731	ENSCJAG00000015815	-	84	48.818	Callithrix_jacchus
ENSHBUG00000018275	ptcd1	83	49.508	ENSCAFG00000015055	-	80	49.508	Canis_familiaris
ENSHBUG00000018275	ptcd1	83	49.427	ENSCAFG00020014480	-	80	49.427	Canis_lupus_dingo
ENSHBUG00000018275	ptcd1	86	48.320	ENSCHIG00000027000	-	87	48.320	Capra_hircus
ENSHBUG00000018275	ptcd1	80	47.920	ENSTSYG00000029495	-	83	48.007	Carlito_syrichta
ENSHBUG00000018275	ptcd1	80	48.904	ENSCAPG00000014660	-	92	48.052	Cavia_aperea
ENSHBUG00000018275	ptcd1	80	49.578	ENSCPOG00000001780	-	86	48.701	Cavia_porcellus
ENSHBUG00000018275	ptcd1	80	49.073	ENSCCAG00000034025	-	84	49.158	Cebus_capucinus
ENSHBUG00000018275	ptcd1	80	48.142	ENSCATG00000040859	-	83	48.229	Cercocebus_atys
ENSHBUG00000018275	ptcd1	84	47.812	ENSCLAG00000006354	-	88	47.930	Chinchilla_lanigera
ENSHBUG00000018275	ptcd1	76	48.393	ENSCSAG00000017794	-	82	48.485	Chlorocebus_sabaeus
ENSHBUG00000018275	ptcd1	82	47.368	ENSCPBG00000020866	-	84	47.528	Chrysemys_picta_bellii
ENSHBUG00000018275	ptcd1	82	48.600	ENSCANG00000023441	-	86	49.588	Colobus_angolensis_palliatus
ENSHBUG00000018275	ptcd1	82	48.430	ENSCGRG00001023686	Ptcd1	85	48.926	Cricetulus_griseus_chok1gshd
ENSHBUG00000018275	ptcd1	82	48.430	ENSCGRG00000015031	Ptcd1	84	48.926	Cricetulus_griseus_crigri
ENSHBUG00000018275	ptcd1	98	58.240	ENSCSEG00000002378	ptcd1	99	58.554	Cynoglossus_semilaevis
ENSHBUG00000018275	ptcd1	93	68.788	ENSCVAG00000003621	ptcd1	98	68.788	Cyprinodon_variegatus
ENSHBUG00000018275	ptcd1	99	68.750	ENSCVAG00000015826	ptcd1	99	68.750	Cyprinodon_variegatus
ENSHBUG00000018275	ptcd1	84	52.195	ENSDARG00000076176	ptcd1	88	52.195	Danio_rerio
ENSHBUG00000018275	ptcd1	80	48.896	ENSDNOG00000009957	-	85	48.440	Dasypus_novemcinctus
ENSHBUG00000018275	ptcd1	80	49.167	ENSDORG00000000740	Ptcd1	86	48.933	Dipodomys_ordii
ENSHBUG00000018275	ptcd1	80	40.159	ENSEBUG00000014515	ptcd1	94	39.964	Eptatretus_burgeri
ENSHBUG00000018275	ptcd1	80	50.588	ENSEASG00005002480	-	83	51.007	Equus_asinus_asinus
ENSHBUG00000018275	ptcd1	80	50.588	ENSECAG00000016617	-	83	51.007	Equus_caballus
ENSHBUG00000018275	ptcd1	91	54.585	ENSELUG00000016517	ptcd1	94	54.585	Esox_lucius
ENSHBUG00000018275	ptcd1	80	49.915	ENSFCAG00000015069	-	83	49.915	Felis_catus
ENSHBUG00000018275	ptcd1	83	46.835	ENSFALG00000013803	-	87	47.152	Ficedula_albicollis
ENSHBUG00000018275	ptcd1	80	48.419	ENSFDAG00000006393	-	85	48.214	Fukomys_damarensis
ENSHBUG00000018275	ptcd1	77	74.457	ENSFHEG00000012491	ptcd1	96	74.457	Fundulus_heteroclitus
ENSHBUG00000018275	ptcd1	87	63.057	ENSGMOG00000007639	ptcd1	99	63.057	Gadus_morhua
ENSHBUG00000018275	ptcd1	83	46.361	ENSGALG00000004711	-	83	47.682	Gallus_gallus
ENSHBUG00000018275	ptcd1	88	69.414	ENSGAFG00000013175	ptcd1	90	70.080	Gambusia_affinis
ENSHBUG00000018275	ptcd1	89	70.423	ENSGACG00000016607	ptcd1	99	70.423	Gasterosteus_aculeatus
ENSHBUG00000018275	ptcd1	77	47.183	ENSGAGG00000021832	-	85	46.441	Gopherus_agassizii
ENSHBUG00000018275	ptcd1	80	48.142	ENSGGOG00000015123	-	83	48.229	Gorilla_gorilla
ENSHBUG00000018275	ptcd1	82	47.954	ENSHGLG00000017621	-	88	47.059	Heterocephalus_glaber_female
ENSHBUG00000018275	ptcd1	82	47.954	ENSHGLG00100007218	-	88	47.059	Heterocephalus_glaber_male
ENSHBUG00000018275	ptcd1	98	57.819	ENSHCOG00000010784	ptcd1	98	58.393	Hippocampus_comes
ENSHBUG00000018275	ptcd1	84	49.029	ENSSTOG00000001682	-	86	49.029	Ictidomys_tridecemlineatus
ENSHBUG00000018275	ptcd1	83	48.940	ENSJJAG00000000319	Ptcd1	87	49.672	Jaculus_jaculus
ENSHBUG00000018275	ptcd1	99	67.044	ENSKMAG00000008708	ptcd1	99	67.044	Kryptolebias_marmoratus
ENSHBUG00000018275	ptcd1	99	66.897	ENSLBEG00000008061	ptcd1	99	67.310	Labrus_bergylta
ENSHBUG00000018275	ptcd1	80	49.578	ENSLACG00000011172	ptcd1	82	49.578	Latimeria_chalumnae
ENSHBUG00000018275	ptcd1	83	51.752	ENSLOCG00000004833	ptcd1	94	51.410	Lepisosteus_oculatus
ENSHBUG00000018275	ptcd1	82	48.191	ENSLAFG00000002588	-	85	48.191	Loxodonta_africana
ENSHBUG00000018275	ptcd1	80	48.142	ENSMFAG00000041324	-	83	48.229	Macaca_fascicularis
ENSHBUG00000018275	ptcd1	80	48.142	ENSMMUG00000030408	-	83	48.229	Macaca_mulatta
ENSHBUG00000018275	ptcd1	80	48.311	ENSMNEG00000043786	-	83	48.398	Macaca_nemestrina
ENSHBUG00000018275	ptcd1	80	35.788	ENSMLEG00000031179	-	81	37.778	Mandrillus_leucophaeus
ENSHBUG00000018275	ptcd1	99	68.392	ENSMAMG00000007623	ptcd1	98	68.392	Mastacembelus_armatus
ENSHBUG00000018275	ptcd1	100	97.881	ENSMZEG00005012722	ptcd1	100	97.881	Maylandia_zebra
ENSHBUG00000018275	ptcd1	87	46.131	ENSMGAG00000004211	-	86	46.429	Meleagris_gallopavo
ENSHBUG00000018275	ptcd1	83	46.179	ENSMICG00000017428	-	87	46.515	Microcebus_murinus
ENSHBUG00000018275	ptcd1	99	69.456	ENSMMOG00000020243	ptcd1	99	69.456	Mola_mola
ENSHBUG00000018275	ptcd1	84	45.768	ENSMODG00000001350	-	85	45.768	Monodelphis_domestica
ENSHBUG00000018275	ptcd1	99	70.874	ENSMALG00000018442	ptcd1	99	70.874	Monopterus_albus
ENSHBUG00000018275	ptcd1	85	47.343	MGP_CAROLIEiJ_G0028011	Ptcd1	89	48.309	Mus_caroli
ENSHBUG00000018275	ptcd1	85	47.987	ENSMUSG00000029624	Ptcd1	89	48.470	Mus_musculus
ENSHBUG00000018275	ptcd1	84	47.658	MGP_PahariEiJ_G0024580	Ptcd1	88	47.981	Mus_pahari
ENSHBUG00000018275	ptcd1	85	46.860	MGP_SPRETEiJ_G0029012	Ptcd1	89	48.148	Mus_spretus
ENSHBUG00000018275	ptcd1	85	47.764	ENSMPUG00000016518	-	88	48.243	Mustela_putorius_furo
ENSHBUG00000018275	ptcd1	80	50.251	ENSMLUG00000010994	-	78	50.334	Myotis_lucifugus
ENSHBUG00000018275	ptcd1	98	93.381	ENSNBRG00000010079	ptcd1	96	96.067	Neolamprologus_brichardi
ENSHBUG00000018275	ptcd1	70	47.419	ENSNLEG00000011060	-	87	47.419	Nomascus_leucogenys
ENSHBUG00000018275	ptcd1	80	46.949	ENSMEUG00000006930	-	84	46.949	Notamacropus_eugenii
ENSHBUG00000018275	ptcd1	70	59.483	ENSOPRG00000013647	-	73	62.069	Ochotona_princeps
ENSHBUG00000018275	ptcd1	85	91.987	ENSONIG00000003168	ptcd1	100	91.987	Oreochromis_niloticus
ENSHBUG00000018275	ptcd1	76	47.627	ENSOANG00000007728	-	73	47.627	Ornithorhynchus_anatinus
ENSHBUG00000018275	ptcd1	85	47.778	ENSOCUG00000010584	-	86	47.785	Oryctolagus_cuniculus
ENSHBUG00000018275	ptcd1	96	67.153	ENSORLG00000009275	ptcd1	99	67.153	Oryzias_latipes
ENSHBUG00000018275	ptcd1	96	68.228	ENSORLG00020000988	ptcd1	99	68.228	Oryzias_latipes_hni
ENSHBUG00000018275	ptcd1	96	68.175	ENSORLG00015010557	ptcd1	99	68.175	Oryzias_latipes_hsok
ENSHBUG00000018275	ptcd1	96	68.576	ENSOMEG00000020627	ptcd1	99	68.576	Oryzias_melastigma
ENSHBUG00000018275	ptcd1	87	45.597	ENSOGAG00000010877	-	89	45.912	Otolemur_garnettii
ENSHBUG00000018275	ptcd1	86	45.073	ENSOARG00000018676	-	88	45.073	Ovis_aries
ENSHBUG00000018275	ptcd1	80	47.804	ENSPPAG00000036024	-	83	47.892	Pan_paniscus
ENSHBUG00000018275	ptcd1	80	50.423	ENSPPRG00000003478	-	84	50.423	Panthera_pardus
ENSHBUG00000018275	ptcd1	84	46.764	ENSPTRG00000019452	-	87	46.850	Pan_troglodytes
ENSHBUG00000018275	ptcd1	80	48.311	ENSPANG00000016730	-	83	48.398	Papio_anubis
ENSHBUG00000018275	ptcd1	80	52.389	ENSPKIG00000014215	ptcd1	84	52.840	Paramormyrops_kingsleyae
ENSHBUG00000018275	ptcd1	80	48.054	ENSPSIG00000011184	-	98	48.223	Pelodiscus_sinensis
ENSHBUG00000018275	ptcd1	70	42.967	ENSPMAG00000009667	ptcd1	100	42.967	Petromyzon_marinus
ENSHBUG00000018275	ptcd1	84	45.741	ENSPCIG00000024778	-	85	45.741	Phascolarctos_cinereus
ENSHBUG00000018275	ptcd1	91	68.293	ENSPFOG00000004458	ptcd1	92	68.293	Poecilia_formosa
ENSHBUG00000018275	ptcd1	91	68.453	ENSPLAG00000011051	ptcd1	99	65.077	Poecilia_latipinna
ENSHBUG00000018275	ptcd1	91	69.066	ENSPMEG00000020547	ptcd1	91	69.066	Poecilia_mexicana
ENSHBUG00000018275	ptcd1	89	68.927	ENSPREG00000000059	ptcd1	90	69.401	Poecilia_reticulata
ENSHBUG00000018275	ptcd1	80	47.731	ENSPPYG00000017377	-	88	47.731	Pongo_abelii
ENSHBUG00000018275	ptcd1	75	52.667	ENSPCAG00000001852	-	83	52.667	Procavia_capensis
ENSHBUG00000018275	ptcd1	82	47.927	ENSPCOG00000018596	-	90	46.977	Propithecus_coquereli
ENSHBUG00000018275	ptcd1	51	59.091	ENSPVAG00000007529	-	55	59.091	Pteropus_vampyrus
ENSHBUG00000018275	ptcd1	100	98.446	ENSPNYG00000019993	ptcd1	100	98.446	Pundamilia_nyererei
ENSHBUG00000018275	ptcd1	81	53.523	ENSPNAG00000014931	ptcd1	89	52.160	Pygocentrus_nattereri
ENSHBUG00000018275	ptcd1	87	46.594	ENSRNOG00000000987	Ptcd1	92	47.123	Rattus_norvegicus
ENSHBUG00000018275	ptcd1	80	48.398	ENSRBIG00000043393	-	83	49.241	Rhinopithecus_bieti
ENSHBUG00000018275	ptcd1	80	48.658	ENSRROG00000036420	-	83	49.497	Rhinopithecus_roxellana
ENSHBUG00000018275	ptcd1	80	48.311	ENSSBOG00000024114	-	84	48.398	Saimiri_boliviensis_boliviensis
ENSHBUG00000018275	ptcd1	84	45.899	ENSSHAG00000011376	-	88	47.088	Sarcophilus_harrisii
ENSHBUG00000018275	ptcd1	84	52.640	ENSSFOG00015007909	ptcd1	83	53.120	Scleropages_formosus
ENSHBUG00000018275	ptcd1	87	68.320	ENSSMAG00000000218	ptcd1	99	68.320	Scophthalmus_maximus
ENSHBUG00000018275	ptcd1	96	72.439	ENSSDUG00000015671	ptcd1	100	72.439	Seriola_dumerili
ENSHBUG00000018275	ptcd1	93	73.353	ENSSLDG00000014261	ptcd1	99	70.968	Seriola_lalandi_dorsalis
ENSHBUG00000018275	ptcd1	87	46.201	ENSSPUG00000003540	-	85	46.201	Sphenodon_punctatus
ENSHBUG00000018275	ptcd1	100	72.514	ENSSPAG00000011049	ptcd1	100	72.514	Stegastes_partitus
ENSHBUG00000018275	ptcd1	86	47.393	ENSSSCG00000007622	-	88	49.915	Sus_scrofa
ENSHBUG00000018275	ptcd1	80	48.199	ENSTGUG00000007563	-	95	48.718	Taeniopygia_guttata
ENSHBUG00000018275	ptcd1	99	64.641	ENSTRUG00000013471	ptcd1	99	64.779	Takifugu_rubripes
ENSHBUG00000018275	ptcd1	95	63.728	ENSTNIG00000008271	ptcd1	99	63.728	Tetraodon_nigroviridis
ENSHBUG00000018275	ptcd1	80	49.079	ENSTBEG00000011021	-	84	49.079	Tupaia_belangeri
ENSHBUG00000018275	ptcd1	80	48.480	ENSTTRG00000003006	-	83	48.480	Tursiops_truncatus
ENSHBUG00000018275	ptcd1	83	48.849	ENSUAMG00000008049	-	86	48.684	Ursus_americanus
ENSHBUG00000018275	ptcd1	83	49.836	ENSVVUG00000008836	-	86	49.836	Vulpes_vulpes
ENSHBUG00000018275	ptcd1	80	46.256	ENSXETG00000009891	ptcd1	84	46.256	Xenopus_tropicalis
ENSHBUG00000018275	ptcd1	89	69.640	ENSXMAG00000015540	ptcd1	90	69.797	Xiphophorus_maculatus