EuRBPDB

Description

RBDs

Transcripts

Gene Model

PPI

Paralogs

Orthologs

Description

Ensembl ID: ENSHBUG00000018310 (Gene tree)
Gene ID: 102290340
Gene Symbol: tnrc6c2
Alias: si:dkey-10p5.9
Full Name: trinucleotide repeat-containing gene 6C protein-like
Gene Type: protein_coding
Species: Haplochromis_burtoni
Status: putative
Strand: Minus strand
Length: 24632 bases
Position: chrJH425525.1:754664-779295
Accession: 102290340
RBP type: canonical RBP
Summary: -

RNA binding domains(RBDs)

Protein ID	Domain	Pfam ID	E-value	Domain number	Total number
ENSHBUP00000032177	RRM_1	PF00076.22	0.00021	1	1

Transcripts

Transcript ID	Name	Length	RefSeq ID	Protein ID	Length	RefSeq ID	UniportKB ID
ENSHBUT00000024884	-	5580	XM_005936453	ENSHBUP00000032177	1859 (aa)	XP_005936515	-

Gene Model

Click here to download ENSHBUG00000018310's gene model file

Protein-Protein Interaction (PPI)

Clik here to download ENSHBUG00000018310's network

Paralogs

Ensembl ID	Gene Symbol	Coverage	Identiy	Paralog	Gene Symbol	Coverage	Identiy
ENSHBUG00000018310	tnrc6c2	98	54.494	ENSHBUG00000010846	tnrc6c1	100	54.305

Orthologs

Ensembl ID	Gene Symbol	Coverage	Identiy	Ortholog	Gene Symbol	Coverage	Identiy	Species
ENSHBUG00000018310	tnrc6c2	99	88.390	ENSAOCG00000017648	tnrc6c2	99	87.854	Amphiprion_ocellaris
ENSHBUG00000018310	tnrc6c2	83	89.956	ENSATEG00000003656	tnrc6c2	100	89.956	Anabas_testudineus
ENSHBUG00000018310	tnrc6c2	100	99.785	ENSACLG00000006469	tnrc6c2	100	99.785	Astatotilapia_calliptera
ENSHBUG00000018310	tnrc6c2	88	58.795	ENSAMXG00000009579	tnrc6c2	100	56.837	Astyanax_mexicanus
ENSHBUG00000018310	tnrc6c2	93	57.231	ENSDARG00000103851	tnrc6c2	100	55.602	Danio_rerio
ENSHBUG00000018310	tnrc6c2	88	60.988	ENSELUG00000007206	tnrc6c2	97	74.227	Esox_lucius
ENSHBUG00000018310	tnrc6c2	84	56.516	ENSELUG00000008149	-	98	80.758	Esox_lucius
ENSHBUG00000018310	tnrc6c2	93	81.462	ENSFHEG00000003901	tnrc6c2	100	83.161	Fundulus_heteroclitus
ENSHBUG00000018310	tnrc6c2	99	67.667	ENSGACG00000019401	tnrc6c2	100	74.267	Gasterosteus_aculeatus
ENSHBUG00000018310	tnrc6c2	99	78.209	ENSHCOG00000017802	tnrc6c2	99	77.540	Hippocampus_comes
ENSHBUG00000018310	tnrc6c2	88	54.399	ENSIPUG00000022767	tnrc6c2	100	52.330	Ictalurus_punctatus
ENSHBUG00000018310	tnrc6c2	88	88.679	ENSMAMG00000001718	tnrc6c2	100	88.314	Mastacembelus_armatus
ENSHBUG00000018310	tnrc6c2	100	99.839	ENSMZEG00005023905	tnrc6c2	100	99.839	Maylandia_zebra
ENSHBUG00000018310	tnrc6c2	88	86.292	ENSMALG00000020932	tnrc6c2	100	86.473	Monopterus_albus
ENSHBUG00000018310	tnrc6c2	83	99.230	ENSNBRG00000000452	tnrc6c2	57	95.022	Neolamprologus_brichardi
ENSHBUG00000018310	tnrc6c2	86	92.773	ENSONIG00000018123	tnrc6c2	100	92.893	Oreochromis_niloticus
ENSHBUG00000018310	tnrc6c2	99	81.213	ENSORLG00000003327	tnrc6c2	99	81.103	Oryzias_latipes
ENSHBUG00000018310	tnrc6c2	99	81.594	ENSORLG00020010730	tnrc6c2	99	81.166	Oryzias_latipes_hni
ENSHBUG00000018310	tnrc6c2	99	81.594	ENSORLG00015009232	tnrc6c2	98	81.327	Oryzias_latipes_hsok
ENSHBUG00000018310	tnrc6c2	99	82.523	ENSOMEG00000017952	tnrc6c2	99	82.362	Oryzias_melastigma
ENSHBUG00000018310	tnrc6c2	92	77.436	ENSPFOG00000011590	tnrc6c2	99	77.119	Poecilia_formosa
ENSHBUG00000018310	tnrc6c2	99	82.105	ENSPMEG00000012946	tnrc6c2	98	83.324	Poecilia_mexicana
ENSHBUG00000018310	tnrc6c2	88	79.300	ENSPREG00000015823	tnrc6c2	61	87.987	Poecilia_reticulata
ENSHBUG00000018310	tnrc6c2	88	99.450	ENSPNYG00000002582	tnrc6c2	100	99.450	Pundamilia_nyererei
ENSHBUG00000018310	tnrc6c2	88	57.788	ENSPNAG00000026838	tnrc6c2	100	57.594	Pygocentrus_nattereri
ENSHBUG00000018310	tnrc6c2	88	85.515	ENSSMAG00000015145	tnrc6c2	100	85.818	Scophthalmus_maximus
ENSHBUG00000018310	tnrc6c2	88	90.262	ENSSDUG00000020741	tnrc6c2	100	90.566	Seriola_dumerili
ENSHBUG00000018310	tnrc6c2	88	89.957	ENSSLDG00000002077	tnrc6c2	100	90.262	Seriola_lalandi_dorsalis
ENSHBUG00000018310	tnrc6c2	99	89.733	ENSSPAG00000013052	tnrc6c2	99	89.305	Stegastes_partitus
ENSHBUG00000018310	tnrc6c2	85	85.011	ENSTNIG00000004178	tnrc6c2	94	84.573	Tetraodon_nigroviridis
ENSHBUG00000018310	tnrc6c2	88	83.900	ENSXMAG00000006739	tnrc6c2	100	84.326	Xiphophorus_maculatus